Sed0027548 (gene) Chayote v1

Overview


Name	Sed0027548
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG14: 23219434 .. 23220365 (-)
RNA-Seq Expression	Sed0027548
Synteny	Sed0027548

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAATCGTGCGATCCCTGAGTTATCTTCCAAAGTCGATAGCTTCGACGATCGCCTTGACGACTTTGTTCGACCTTCTCGTACAATTTGAATTTGAAGATGCTACTCGCATTGGAAGTGATCAGACTCTCATTGAAAATCTAATTCATGTCAACGATCAGGCTCCTTTCGACAATTGAACACTTCAAGACAATCTTCCTGATCTGGGCTATAATCAGAATCATCTACTTTCTGCAATGATTAGGCTTCTTTCAGGAATCGAACACTTCAAAACGATCTTCATGATCTGGGCAATAATCAAAATCATCCACTTCCTGTCAATGATCAGGCTCCTTTCGACAATCGAACACTTCAAGATAATCTTCTTGATCTGGGCAATAATCAAAATCATTCACTTCTTGCCAATGATCAGGCTCCTCTCGGTAATCGAACACTTCAAGACGATTTTCCTGATCTGGGCAATAATCAAAATCATCACTTCCTGTCAATGATTAAGCTCCTTTCGGCAATCAAACACTTCAAGAGGATCATCCTGATCTAGGCAATAATCAGAATCATCCACTTCCTGCCAATGATCAAGCTCTTTTCCAATCGAACACTTCAGGCGATCTTCCTGATCTGGGCAATAATCAAAATCATCCACTTACTGCCATTGATCTAGCTCCTTTCGACACTCGAACACTTCAAGACGATCTTCCTAATCTGGGCAATAATCATAATCATCCACTTCCTGCCAATGATCAGGCTCCTTTCGAAAATCGAACACTTCAAGACGATCTTCTTGATCTGGAAAATAATAAGAATCATCCACTTCCCGTTAATGATCCGGCTCCTTTCGGCAATCGAACACTTCAAGACGATCTTCTTGATCCAGGCAATAATCAAAATTATCCACTTTCTACCAATGATCAAACTCTTTTTGACAATTGA

mRNA sequence

ATGGATAATCGTGCGATCCCTGAGTTATCTTCCAAAGTCGATAGCTTCGACGATCGCCTTGACGACTTTGCTTCTTTCAGGAATCGAACACTTCAAAACGATCTTCATGATCTGGGCAATAATCAAAATCATCCACTTCCTGTCAATGATCAGGCTCCTTTCGACAATCGAACACTTCAAGATAATCTTCTTGATCTGGGCAATAATCAAAATCATTCACTTCTTGCCAATGATCAGGCTCCTCTCGCTCCTTTCGGCAATCAAACACTTCAAGAGGATCATCCTGATCTAGGCAATAATCAGAATCATCCACTTCCTGCCAATGATCAAGCTCTTTTCCAATCGAACACTTCAGGCGATCTTCCTGATCTGGGCAATAATCAAAATCATCCACTTACTGCCATTGATCTAGCTCCTTTCGACACTCGAACACTTCAAGACGATCTTCCTAATCTGGGCAATAATCATAATCATCCACTTCCTGCCAATGATCAGGCTCCTTTCGAAAATCGAACACTTCAAGACGATCTTCTTGATCTGGAAAATAATAAGAATCATCCACTTCCCGTTAATGATCCGGCTCCTTTCGGCAATCGAACACTTCAAGACGATCTTCTTGATCCAGGCAATAATCAAAATTATCCACTTTCTACCAATGATCAAACTCTTTTTGACAATTGA

Coding sequence (CDS)

ATGGATAATCGTGCGATCCCTGAGTTATCTTCCAAAGTCGATAGCTTCGACGATCGCCTTGACGACTTTGCTTCTTTCAGGAATCGAACACTTCAAAACGATCTTCATGATCTGGGCAATAATCAAAATCATCCACTTCCTGTCAATGATCAGGCTCCTTTCGACAATCGAACACTTCAAGATAATCTTCTTGATCTGGGCAATAATCAAAATCATTCACTTCTTGCCAATGATCAGGCTCCTCTCGCTCCTTTCGGCAATCAAACACTTCAAGAGGATCATCCTGATCTAGGCAATAATCAGAATCATCCACTTCCTGCCAATGATCAAGCTCTTTTCCAATCGAACACTTCAGGCGATCTTCCTGATCTGGGCAATAATCAAAATCATCCACTTACTGCCATTGATCTAGCTCCTTTCGACACTCGAACACTTCAAGACGATCTTCCTAATCTGGGCAATAATCATAATCATCCACTTCCTGCCAATGATCAGGCTCCTTTCGAAAATCGAACACTTCAAGACGATCTTCTTGATCTGGAAAATAATAAGAATCATCCACTTCCCGTTAATGATCCGGCTCCTTTCGGCAATCGAACACTTCAAGACGATCTTCTTGATCCAGGCAATAATCAAAATTATCCACTTTCTACCAATGATCAAACTCTTTTTGACAATTGA

Protein sequence

MDNRAIPELSSKVDSFDDRLDDFASFRNRTLQNDLHDLGNNQNHPLPVNDQAPFDNRTLQDNLLDLGNNQNHSLLANDQAPLAPFGNQTLQEDHPDLGNNQNHPLPANDQALFQSNTSGDLPDLGNNQNHPLTAIDLAPFDTRTLQDDLPNLGNNHNHPLPANDQAPFENRTLQDDLLDLENNKNHPLPVNDPAPFGNRTLQDDLLDPGNNQNYPLSTNDQTLFDN

Homology

[Close]

BLAST of Sed0027548 vs. NCBI nr
Match: XP_018359597.1 (PREDICTED: limulus clotting factor C-like isoform X1 [Trachymyrmex cornetzi])

HSP 1 Score: 58.9 bits (141), Expect = 6.4e-05
Identity = 48/188 (25.53%), Postives = 87/188 (46.28%), Query Frame = 0


Query: 34  DLHDLGNNQNHPLPVNDQAPFDNRTLQDNLLDLGNNQNHSLLANDQAPLAPFGNQTLQED 93
           D+ +    +N+P P ND+  + +    +N     NN+NH    N++    P       E+
Sbjct: 105 DIENSSEGENYPRPNNDE-NYSHPNSGENYPRPNNNKNHPRPNNNKNHSRPNNG----EN 164

Query: 94  HPDLGNNQNHPLPANDQALFQSNTSGDLPDLGNNQNHPLTAIDLAPFDTRTLQDDLPNLG 153
           +P   N++N+P P ND+   + N + + P   NN+N+P    +   +      ++     
Sbjct: 165 YPRPNNDENYPRPNNDENYSRPNNNVNHPRPNNNENYP-RPNNGDNYPRPNNDENYSRPS 224

Query: 154 NNHNHPLPANDQAPFENRTLQDDLLDLENNKNHPLPVNDPAPFGNRTLQDDLLDPGNNQN 213
           NN N+P P ND+  +   +  ++     NN+N+P P N          +++   P NN+N
Sbjct: 225 NNENYPRPNNDE-NYSRPSKNENPSRPNNNENYPRPNN----------EENYSRPSNNEN 275

Query: 214 YPLSTNDQ 222
           YP   ND+
Sbjct: 285 YPRPNNDE 275

[Close]

BLAST of Sed0027548 vs. ExPASy TrEMBL
Match: A0A674BIB2 (Uncharacterized protein OS=Salmo trutta OX=8032 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 9.1e-05
Identity = 68/194 (35.05%), Postives = 84/194 (43.30%), Query Frame = 0


Query: 40  NNQNHPLPVNDQAPFDNRTLQDNLLDL---GNNQNHSLLANDQAPLAPFGNQTL-----Q 99
           +N N PLP N+     N  L  N  +    GNN N  L  N+     P  N         
Sbjct: 26  HNHNTPLPGNNH----NTPLPGNNHNTPLPGNNHNTPLPGNNHNTPLPGNNHNTPLPGNN 85

Query: 100 EDHPDLGNNQNHPLPAND--QALFQSNTSGDLPDLGNNQNHPLTAID-LAPFDTRTLQDD 159
           ++ P  GNN N PLP N+  + L  +N    LP  GNN N PL   +  AP      +  
Sbjct: 86  QNTPLPGNNHNTPLPGNNHKEPLPGNNHKAPLP--GNNHNTPLPGNNHKAPLPGNNHRAP 145

Query: 160 LPNLGNNHNHPLPAND-QAPFENRTLQDDLLDLENNKNHPLPVND-PAPFGNRTLQDDLL 219
           LP  GNNH  PLP N+ +AP         L    NN N PLP N+  AP      +  L 
Sbjct: 146 LP--GNNHEAPLPGNNHKAPLPGNNHNTPLPG--NNHNAPLPGNNHKAPLPGNNHKAPL- 205

Query: 220 DPGNNQNYPLSTND 221
            PGNN   PL  N+
Sbjct: 206 -PGNNHKAPLPGNN 207

The following BLAST results are available for this feature:

BLAST of Sed0027548 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_018359597.1	6.4e-05	25.53	PREDICTED: limulus clotting factor C-like isoform X1 [Trachymyrmex cornetzi]	[more]

BLAST of Sed0027548 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0027548 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A674BIB2	9.1e-05	35.05	Uncharacterized protein OS=Salmo trutta OX=8032 PE=4 SV=1	[more]

BLAST of Sed0027548 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 146..167
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 204..226
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 147..161
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 181..226

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0027548.1	Sed0027548.1	mRNA