Sed0027529 (gene) Chayote v1

Overview
NameSed0027529
Typegene
OrganismSechium edule (Chayote v1)
DescriptionPoly(A)-specific ribonuclease
LocationLG11: 27771958 .. 27773061 (+)
RNA-Seq ExpressionSed0027529
SyntenySed0027529
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCGCACCTTCCATAAATCTCTCACTTTCTTCCCATTTGAATCTCTATAAAAATAAAAAAAACTCCCCCAAGATTAATCTTCCATCCTAAATCTCATTTCTAACTTCCTCATCAAATCCGGATCGGATCGCCATGGTTATCGAAGATCTGAAGAACAGCAACACCAAACCCATCAAGATCCGTGAGGTTTGGGCTCACAATCTCGAATCCGAGTTCCTCTTCATCCGCGCCGTCATCGATCGCTTCCCTTGCGTCTCCATGGACACCGAGTTCCCCGGAATCGTCTTCTCCGATCCCGCCCGCCCCCACCAATCCCGCCCCTCCGACCACTACCGCCTCCTCAAATCCAACGTCGACGCCCTCCATCTCATCCAGATCGGCCTCACCCTCTCCGACTCCGCCGGAAACCTCCCCGATCTCGGCTCCGACGACGCCCGCTTCATCTGGGAGTTCAACTTCATGGACTTCGACGTCGCGCGTGACTTCCACTCGCCGGACTCCATCGACCTCCTCCGCCGCCAGGGCATCGACTTCGACCGGAACCGGGCGGAGGGGGCCGACTCGCGCCGGTTCGCCGAGCTGATGATGTCCTCGGGCCTCGTCTGCAGCGACTCGGTGACCTGGGTGACGTTCCACAGCGCCTACGACTTCGGGTATCTGGTTAAGATCCTCACGCAGCGGAGCCTTCCGGATCGGCTCGACGAATTCCTCGCCGTTCTTAGGGTTTTCTTCGGCGATTACGTGTACGACGTGAAGCACATGATGCGGTTCTGCAGCAGCCTCTACGGCGGCCTGGACCGGATCGCCAAAACGCTCAATGTGAACCGGGCCGTGGGGAAGTGCCATCAGGCCGGGTCGGATAGTTTGCTGACGTGGCATGCGTTTCAGAAGATGAGGGATACCTTTTTTGTACAGCAGGATGTGGAGAAACATGCTGGGATATTGTATGGATTGGAGGTGTTCTAAAAAAAAATAGAAAATTTAATTAAATAAAAATGTTTATTTATTATTTATTTATTTAATTATTTGTCTTTTTTTAATCTTTTAAAAGCTATAATAATTCTATTGGGAATTGGCTAATATATATATATAATGTACAAACTTC

mRNA sequence

TCGCACCTTCCATAAATCTCTCACTTTCTTCCCATTTGAATCTCTATAAAAATAAAAAAAACTCCCCCAAGATTAATCTTCCATCCTAAATCTCATTTCTAACTTCCTCATCAAATCCGGATCGGATCGCCATGGTTATCGAAGATCTGAAGAACAGCAACACCAAACCCATCAAGATCCGTGAGGTTTGGGCTCACAATCTCGAATCCGAGTTCCTCTTCATCCGCGCCGTCATCGATCGCTTCCCTTGCGTCTCCATGGACACCGAGTTCCCCGGAATCGTCTTCTCCGATCCCGCCCGCCCCCACCAATCCCGCCCCTCCGACCACTACCGCCTCCTCAAATCCAACGTCGACGCCCTCCATCTCATCCAGATCGGCCTCACCCTCTCCGACTCCGCCGGAAACCTCCCCGATCTCGGCTCCGACGACGCCCGCTTCATCTGGGAGTTCAACTTCATGGACTTCGACGTCGCGCGTGACTTCCACTCGCCGGACTCCATCGACCTCCTCCGCCGCCAGGGCATCGACTTCGACCGGAACCGGGCGGAGGGGGCCGACTCGCGCCGGTTCGCCGAGCTGATGATGTCCTCGGGCCTCGTCTGCAGCGACTCGGTGACCTGGGTGACGTTCCACAGCGCCTACGACTTCGGGTATCTGGTTAAGATCCTCACGCAGCGGAGCCTTCCGGATCGGCTCGACGAATTCCTCGCCGTTCTTAGGGTTTTCTTCGGCGATTACGTGTACGACGTGAAGCACATGATGCGGTTCTGCAGCAGCCTCTACGGCGGCCTGGACCGGATCGCCAAAACGCTCAATGTGAACCGGGCCGTGGGGAAGTGCCATCAGGCCGGGTCGGATAGTTTGCTGACGTGGCATGCGTTTCAGAAGATGAGGGATACCTTTTTTGTACAGCAGGATGTGGAGAAACATGCTGGGATATTGTATGGATTGGAGGTGTTCTAAAAAAAAATAGAAAATTTAATTAAATAAAAATGTTTATTTATTATTTATTTATTTAATTATTTGTCTTTTTTTAATCTTTTAAAAGCTATAATAATTCTATTGGGAATTGGCTAATATATATATATAATGTACAAACTTC

Coding sequence (CDS)

ATGGTTATCGAAGATCTGAAGAACAGCAACACCAAACCCATCAAGATCCGTGAGGTTTGGGCTCACAATCTCGAATCCGAGTTCCTCTTCATCCGCGCCGTCATCGATCGCTTCCCTTGCGTCTCCATGGACACCGAGTTCCCCGGAATCGTCTTCTCCGATCCCGCCCGCCCCCACCAATCCCGCCCCTCCGACCACTACCGCCTCCTCAAATCCAACGTCGACGCCCTCCATCTCATCCAGATCGGCCTCACCCTCTCCGACTCCGCCGGAAACCTCCCCGATCTCGGCTCCGACGACGCCCGCTTCATCTGGGAGTTCAACTTCATGGACTTCGACGTCGCGCGTGACTTCCACTCGCCGGACTCCATCGACCTCCTCCGCCGCCAGGGCATCGACTTCGACCGGAACCGGGCGGAGGGGGCCGACTCGCGCCGGTTCGCCGAGCTGATGATGTCCTCGGGCCTCGTCTGCAGCGACTCGGTGACCTGGGTGACGTTCCACAGCGCCTACGACTTCGGGTATCTGGTTAAGATCCTCACGCAGCGGAGCCTTCCGGATCGGCTCGACGAATTCCTCGCCGTTCTTAGGGTTTTCTTCGGCGATTACGTGTACGACGTGAAGCACATGATGCGGTTCTGCAGCAGCCTCTACGGCGGCCTGGACCGGATCGCCAAAACGCTCAATGTGAACCGGGCCGTGGGGAAGTGCCATCAGGCCGGGTCGGATAGTTTGCTGACGTGGCATGCGTTTCAGAAGATGAGGGATACCTTTTTTGTACAGCAGGATGTGGAGAAACATGCTGGGATATTGTATGGATTGGAGGTGTTCTAA

Protein sequence

MVIEDLKNSNTKPIKIREVWAHNLESEFLFIRAVIDRFPCVSMDTEFPGIVFSDPARPHQSRPSDHYRLLKSNVDALHLIQIGLTLSDSAGNLPDLGSDDARFIWEFNFMDFDVARDFHSPDSIDLLRRQGIDFDRNRAEGADSRRFAELMMSSGLVCSDSVTWVTFHSAYDFGYLVKILTQRSLPDRLDEFLAVLRVFFGDYVYDVKHMMRFCSSLYGGLDRIAKTLNVNRAVGKCHQAGSDSLLTWHAFQKMRDTFFVQQDVEKHAGILYGLEVF
Homology
[Close]
BLAST of Sed0027529 vs. NCBI nr
Match: XP_038877224.1 (probable CCR4-associated factor 1 homolog 11 [Benincasa hispida])

HSP 1 Score: 484.6 bits (1246), Expect = 5.8e-133
Identity = 234/279 (83.87%), Postives = 255/279 (91.40%), Query Frame = 0 

Query: 1   MVIEDLKNSNTKPIKIREVWAHNLESEFLFIRAVIDRFPCVSMDTEFPGIVFSDPARP-- 60
           MVI DL N N K IKIREVWA NLESEF  IR +ID+FPCVSMDTEFPGIVF+DPARP  
Sbjct: 1   MVIHDL-NINNKSIKIREVWASNLESEFQLIRDLIDQFPCVSMDTEFPGIVFADPARPFN 60

Query: 61  HQSRPSDHYRLLKSNVDALHLIQIGLTLSDSAGNLPDLGSDDARFIWEFNFMDFDVARDF 120
            QS+PSDHYRLLKSNVDALHLIQIG+TLSDS GNLPDLG+DD RFIWEFNFMDFDVARD 
Sbjct: 61  FQSQPSDHYRLLKSNVDALHLIQIGITLSDSDGNLPDLGTDDTRFIWEFNFMDFDVARDL 120

Query: 121 HSPDSIDLLRRQGIDFDRNRAEGADSRRFAELMMSSGLVCSDSVTWVTFHSAYDFGYLVK 180
           H+PDSI+LLRRQGIDF+RNR EG DS RFAELMMSSGLVC++SV+WVTFHSAYDFGYLVK
Sbjct: 121 HAPDSIELLRRQGIDFNRNRVEGIDSSRFAELMMSSGLVCNNSVSWVTFHSAYDFGYLVK 180

Query: 181 ILTQRSLPDRLDEFLAVLRVFFGDYVYDVKHMMRFCSSLYGGLDRIAKTLNVNRAVGKCH 240
           ILTQR LPDR+DEFL VLRVFFGD VYD+K++MRFC SLYGGLDRIAK LNVNRAVGKCH
Sbjct: 181 ILTQRRLPDRVDEFLGVLRVFFGDNVYDMKYLMRFCESLYGGLDRIAKILNVNRAVGKCH 240

Query: 241 QAGSDSLLTWHAFQKMRDTFFVQQDVEKHAGILYGLEVF 278
           QAGSDSLLTWHAFQKMRDT+FVQ +++KHAG+LYGLEVF
Sbjct: 241 QAGSDSLLTWHAFQKMRDTYFVQNEMQKHAGVLYGLEVF 278

[Close]
BLAST of Sed0027529 vs. NCBI nr
Match: XP_022142408.1 (probable CCR4-associated factor 1 homolog 11 [Momordica charantia])

HSP 1 Score: 479.9 bits (1234), Expect = 1.4e-131
Identity = 230/278 (82.73%), Postives = 257/278 (92.45%), Query Frame = 0 

Query: 1   MVIEDLKNSNTKPIKIREVWAHNLESEFLFIRAVIDRFPCVSMDTEFPGIVFSDPARPH- 60
           MV++DLKN N+KPI+IREVWA NLESEF  IR +ID+FPCVSMDTEFPG+VF+DPA+P+ 
Sbjct: 1   MVVQDLKN-NSKPIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYH 60

Query: 61  -QSRPSDHYRLLKSNVDALHLIQIGLTLSDSAGNLPDLGSDDARFIWEFNFMDFDVARDF 120
            Q+RPSDHYRLLKSNVDAL+LIQIG+TLSDS GNLPDLG+  +RFIWEFNFMDFDVARD 
Sbjct: 61  RQNRPSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLGTGGSRFIWEFNFMDFDVARDV 120

Query: 121 HSPDSIDLLRRQGIDFDRNRAEGADSRRFAELMMSSGLVCSDSVTWVTFHSAYDFGYLVK 180
           H+PDSI+LLRRQGIDFDRNR EG DS RFAELMMSSGLVC+DSV+WVTFHSAYDFGYLVK
Sbjct: 121 HAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVK 180

Query: 181 ILTQRSLPDRLDEFLAVLRVFFGDYVYDVKHMMRFCSSLYGGLDRIAKTLNVNRAVGKCH 240
           +LT+RSLP RL+EFL VLRVFFGD VYDVK+MMRFC SLYGGLDRIAK LNV+RAVGKCH
Sbjct: 181 VLTRRSLPSRLEEFLGVLRVFFGDQVYDVKYMMRFCKSLYGGLDRIAKILNVSRAVGKCH 240

Query: 241 QAGSDSLLTWHAFQKMRDTFFVQQDVEKHAGILYGLEV 277
           QAGSDSLLTWHAFQKMRDT+FVQ  +EKHAG+LYGLEV
Sbjct: 241 QAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLEV 277

[Close]
BLAST of Sed0027529 vs. NCBI nr
Match: XP_023541056.1 (probable CCR4-associated factor 1 homolog 11 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 473.0 bits (1216), Expect = 1.8e-129
Identity = 228/281 (81.14%), Postives = 251/281 (89.32%), Query Frame = 0 

Query: 1   MVIEDLKNSNTKPIKIREVWAHNLESEFLFIRAVIDRFPCVSMDTEFPGIVFSDPARP-- 60
           MV  DL N++ K IKIREVWA NLESEF  IR +ID FPCVSMDTEFPGIVF+ P  P  
Sbjct: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN 60

Query: 61  --HQSRPSDHYRLLKSNVDALHLIQIGLTLSDSAGNLPDLGSDDARFIWEFNFMDFDVAR 120
             ++S  SDHY+LLKSNVDAL+LIQIG+TLSDS GNLPDLG+DD+RFIWEFNFMDFD+AR
Sbjct: 61  ALNRSSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLAR 120

Query: 121 DFHSPDSIDLLRRQGIDFDRNRAEGADSRRFAELMMSSGLVCSDSVTWVTFHSAYDFGYL 180
           D ++PDSIDLLRRQGIDFDRNR EG DSRRFAELMMSSGLVC+DSV+WVTFHSAYDF YL
Sbjct: 121 DIYAPDSIDLLRRQGIDFDRNRVEGIDSRRFAELMMSSGLVCNDSVSWVTFHSAYDFAYL 180

Query: 181 VKILTQRSLPDRLDEFLAVLRVFFGDYVYDVKHMMRFCSSLYGGLDRIAKTLNVNRAVGK 240
           +KILTQ+SLP+RLDEFL VLRV FGD VYDVK+MMRFC SLYGGLDRIAK+LNVNRAVGK
Sbjct: 181 IKILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGK 240

Query: 241 CHQAGSDSLLTWHAFQKMRDTFFVQQDVEKHAGILYGLEVF 278
           CHQAGSDSLLTWHAFQKMRDTFFVQ +VEKHAG+LYGLE F
Sbjct: 241 CHQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 281

[Close]
BLAST of Sed0027529 vs. NCBI nr
Match: XP_022945861.1 (probable CCR4-associated factor 1 homolog 11 [Cucurbita moschata] >KAG6573637.1 putative CCR4-associated factor 1-like 11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 468.0 bits (1203), Expect = 5.6e-128
Identity = 226/280 (80.71%), Postives = 248/280 (88.57%), Query Frame = 0 

Query: 1   MVIEDLKNSNTKPIKIREVWAHNLESEFLFIRAVIDRFPCVSMDTEFPGIVFSDPARPHQ 60
           MV  DL N++ K IKIREVWA NLESEF  IR +ID FPCVSMDTEFPGIVF+ P  P  
Sbjct: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN 60

Query: 61  S---RPSDHYRLLKSNVDALHLIQIGLTLSDSAGNLPDLGSDDARFIWEFNFMDFDVARD 120
           +     SDHY+LLKSNVDAL+LIQIG+TLSDS GNLPDLG+DD+RFIWEFNFMDFD+ARD
Sbjct: 61  ALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARD 120

Query: 121 FHSPDSIDLLRRQGIDFDRNRAEGADSRRFAELMMSSGLVCSDSVTWVTFHSAYDFGYLV 180
            ++PDSIDLLRRQGIDFDRNR EG DS RFAELMMSSGLVC+DSV+WVTFHSAYDF YL+
Sbjct: 121 IYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLI 180

Query: 181 KILTQRSLPDRLDEFLAVLRVFFGDYVYDVKHMMRFCSSLYGGLDRIAKTLNVNRAVGKC 240
           KILTQ+SLP+RLDEFL VLRV FGD VYDVK+MMRFC SLYGGLDRIAK+LNVNRAVGKC
Sbjct: 181 KILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKC 240

Query: 241 HQAGSDSLLTWHAFQKMRDTFFVQQDVEKHAGILYGLEVF 278
           HQAGSDSLLTWHAFQKMRDTFFVQ +VEKHAG+LYGLE F
Sbjct: 241 HQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 280

[Close]
BLAST of Sed0027529 vs. NCBI nr
Match: XP_022967098.1 (probable CCR4-associated factor 1 homolog 11 [Cucurbita maxima])

HSP 1 Score: 466.1 bits (1198), Expect = 2.1e-127
Identity = 225/280 (80.36%), Postives = 247/280 (88.21%), Query Frame = 0 

Query: 1   MVIEDLKNSNTKPIKIREVWAHNLESEFLFIRAVIDRFPCVSMDTEFPGIVFSDPARPHQ 60
           MV  DL N++ K IKIREVWA NLESEF  IR +ID FPCVSMDTEFPGIVF+ P  P  
Sbjct: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN 60

Query: 61  S---RPSDHYRLLKSNVDALHLIQIGLTLSDSAGNLPDLGSDDARFIWEFNFMDFDVARD 120
           S     SDHY+LLKSNVDAL+LIQIG+TLSDS GNLPDLG+DD+RFIWEFNFMDFD+ARD
Sbjct: 61  SLNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARD 120

Query: 121 FHSPDSIDLLRRQGIDFDRNRAEGADSRRFAELMMSSGLVCSDSVTWVTFHSAYDFGYLV 180
            ++PDSIDLLRRQGIDFDRNR EG DS RFAELMMSSGLVC+DSV+WVTFHSAYDF YL+
Sbjct: 121 IYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLI 180

Query: 181 KILTQRSLPDRLDEFLAVLRVFFGDYVYDVKHMMRFCSSLYGGLDRIAKTLNVNRAVGKC 240
           KILTQ+ LP+R+DEFL VLRV FGD VYDVK+MMRFC SLYGGLDRIAK+LNVNRAVGKC
Sbjct: 181 KILTQKRLPNRVDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKC 240

Query: 241 HQAGSDSLLTWHAFQKMRDTFFVQQDVEKHAGILYGLEVF 278
           HQAGSDSLLTWHAFQKMRDTFFVQ +VEKHAG+LYGLE F
Sbjct: 241 HQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 280

[Close]
BLAST of Sed0027529 vs. ExPASy Swiss-Prot
Match: Q9LXM2 (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana OX=3702 GN=CAF1-9 PE=2 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 2.2e-106
Identity = 191/276 (69.20%), Postives = 220/276 (79.71%), Query Frame = 0 

Query: 8   NSNTKP----IKIREVWAHNLESEFLFIRAVIDRFPCVSMDTEFPGIVFSDPARPHQSRP 67
           N + KP    +  REVWA NLESEF  I  +ID +P +SMDTEFPG++F    R   + P
Sbjct: 7   NRDLKPDGVTVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLR--FTNP 66

Query: 68  SDHYRLLKSNVDALHLIQIGLTLSDSAGNLPDLGSDDAR-FIWEFNFMDFDVARDFHSPD 127
            D Y LLK+NVDAL LIQ+GLTLSD  GNLPDLG D  R FIWEFNF DFDVARD H+PD
Sbjct: 67  DDLYTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPD 126

Query: 128 SIDLLRRQGIDFDRNRAEGADSRRFAELMMSSGLVCSDSVTWVTFHSAYDFGYLVKILTQ 187
           SI+LLRRQGIDF+RN  +G +S RFAELMMSSGLVC++ V+WVTFHSAYDFGYL+KILT+
Sbjct: 127 SIELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTR 186

Query: 188 RSLPDRLDEFLAVLRVFFGDYVYDVKHMMRFCS-SLYGGLDRIAKTLNVNRAVGKCHQAG 247
           R LP  L EF  V+RV FG+ VYDVKHMM+FC   L+GGLDR+A+TL VNRAVGKCHQAG
Sbjct: 187 RELPGALGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAG 246

Query: 248 SDSLLTWHAFQKMRDTFFVQQDVEKHAGILYGLEVF 278
           SDSLLTWHAFQ+MRD +FVQ   EKHAG+LYGLEVF
Sbjct: 247 SDSLLTWHAFQRMRDLYFVQDGPEKHAGVLYGLEVF 280

[Close]
BLAST of Sed0027529 vs. ExPASy Swiss-Prot
Match: Q9FMS6 (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana OX=3702 GN=CAF1-11 PE=2 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 4.8e-106
Identity = 186/267 (69.66%), Postives = 221/267 (82.77%), Query Frame = 0 

Query: 14  IKIREVWAHNLESEFLFIRAVIDRFPCVSMDTEFPGIVF-SDPARPHQSRPSDHYRLLKS 73
           I IR+VWA+NLESEF  IR +++ +P +SMDTEFPG+++ +D     +  P+  Y LLKS
Sbjct: 12  IVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYNLLKS 71

Query: 74  NVDALHLIQIGLTLSDSAGNLPDLGSD-DARFIWEFNFMDFDVARDFHSPDSIDLLRRQG 133
           NVDAL LIQ+GLTLSD+ GNLPDLG   + R+IWEFNF DFDV RD H+PDSI+LLRR G
Sbjct: 72  NVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHG 131

Query: 134 IDFDRNRAEGADSRRFAELMMSSGLVCSDSVTWVTFHSAYDFGYLVKILTQRSLPDRLDE 193
           IDF+RNR EG +S RFAELMMSSGL+C++SV+WVTFHSAYDFGYLVKILT+R LP  L E
Sbjct: 132 IDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVALRE 191

Query: 194 FLAVLRVFFGDYVYDVKHMMRFCSS-LYGGLDRIAKTLNVNRAVGKCHQAGSDSLLTWHA 253
           FL +LR FFGD VYDVKH+MRFC   LYGGLDR+A++L VNRAVGKCHQAGSDSLLTW A
Sbjct: 192 FLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLTWQA 251

Query: 254 FQKMRDTFFVQQDVEKHAGILYGLEVF 278
           FQ+MRD +FV+   EKHAG+LYGLEVF
Sbjct: 252 FQRMRDLYFVEDGAEKHAGVLYGLEVF 278

[Close]
BLAST of Sed0027529 vs. ExPASy Swiss-Prot
Match: Q9SKZ2 (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 289.7 bits (740), Expect = 3.6e-77
Identity = 143/263 (54.37%), Postives = 195/263 (74.14%), Query Frame = 0 

Query: 14  IKIREVWAHNLESEFLFIRAVIDRFPCVSMDTEFPGIVFSDPARPHQSRPSDHYRLLKSN 73
           I+IREVW  NLESE   IR V+D FP V+MDTEFPGIV   P    ++    HY  LK+N
Sbjct: 10  IQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIV-CRPVGTFKTNTEYHYETLKTN 69

Query: 74  VDALHLIQIGLTLSDSAGNLPDLGSDDARFIWEFNFMDFDVARDFHSPDSIDLLRRQGID 133
           V+ L +IQ+GLT SD  GNLP  G+D+   IW+FNF +FD+  D ++ DSI+LLR+ GID
Sbjct: 70  VNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGID 129

Query: 134 FDRNRAEGADSRRFAELMMSSGLVCSDSVTWVTFHSAYDFGYLVKILTQRSLPDRLDEFL 193
           F +N   G DS+RFAEL+MSSG+V +++V WVTFHS YDFGYL+K+LT ++LP+    F 
Sbjct: 130 FVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQTGFF 189

Query: 194 AVLRVFFGDYVYDVKHMMRFCSSLYGGLDRIAKTLNVNRAVGKCHQAGSDSLLTWHAFQK 253
            ++ V+F   VYD+KH+M+FC+SL+GGL+++A+ L+V R VG CHQAGSDSLLT   F+K
Sbjct: 190 EMISVYF-PRVYDIKHLMKFCNSLHGGLNKLAELLDVER-VGICHQAGSDSLLTSCTFRK 249

Query: 254 MRDTFFVQQDVEKHAGILYGLEV 277
           +++ FF+   +EK++G+LYGL V
Sbjct: 250 LQENFFI-GSMEKYSGVLYGLGV 268

[Close]
BLAST of Sed0027529 vs. ExPASy Swiss-Prot
Match: Q9SAI2 (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=CAF1-6 PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 1.1e-73
Identity = 140/263 (53.23%), Postives = 191/263 (72.62%), Query Frame = 0 

Query: 14  IKIREVWAHNLESEFLFIRAVIDRFPCVSMDTEFPGIVFSDPARPHQSRPSDHYRLLKSN 73
           I+IREVW  NL+ E   IR V+D FP V+MDTEFPGIV   P    +S    HY  LK+N
Sbjct: 10  IQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVR-PVGTFKSNADYHYETLKTN 69

Query: 74  VDALHLIQIGLTLSDSAGNLPDLGSDDARFIWEFNFMDFDVARDFHSPDSIDLLRRQGID 133
           V+ L +IQ+GLT S+  GNLP  G+ D   IW+FNF +FD+  D  + DSI+LL++ GID
Sbjct: 70  VNILKMIQLGLTFSNEQGNLPTCGT-DKYCIWQFNFREFDLDSDIFALDSIELLKQSGID 129

Query: 134 FDRNRAEGADSRRFAELMMSSGLVCSDSVTWVTFHSAYDFGYLVKILTQRSLPDRLDEFL 193
             +N  +G DS+RFAEL+MSSG+V +++V WVTFHS YDFGYL+K+LT ++LPD   +F 
Sbjct: 130 LAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFF 189

Query: 194 AVLRVFFGDYVYDVKHMMRFCSSLYGGLDRIAKTLNVNRAVGKCHQAGSDSLLTWHAFQK 253
            ++ V+F   VYD+KH+M+FC+SL+GGL+++A+ L V R VG CHQAGSDSLLT   F+K
Sbjct: 190 KLINVYF-PTVYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTSCTFRK 249

Query: 254 MRDTFFVQQDVEKHAGILYGLEV 277
           +++ FFV   + K++G+LYGL V
Sbjct: 250 LKENFFV-GPLHKYSGVLYGLGV 267

[Close]
BLAST of Sed0027529 vs. ExPASy Swiss-Prot
Match: Q9LEU4 (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana OX=3702 GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 4.6e-72
Identity = 136/263 (51.71%), Postives = 185/263 (70.34%), Query Frame = 0 

Query: 14  IKIREVWAHNLESEFLFIRAVIDRFPCVSMDTEFPGIVFSDPARPHQSRPSDHYRLLKSN 73
           I IREVW +NL  EF  IR ++D+F  ++MDTEFPG+V   P    +     +YR LK N
Sbjct: 10  IMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLK-PVATFKYNNDLNYRTLKEN 69

Query: 74  VDALHLIQIGLTLSDSAGNLPDLGSDDARFIWEFNFMDFDVARDFHSPDSIDLLRRQGID 133
           VD L LIQ+GLT SD  GNLP  G+D    IW+FNF +F++  D ++ +SI+LLR+ GID
Sbjct: 70  VDLLKLIQVGLTFSDENGNLPTCGTDKF-CIWQFNFREFNIGEDIYASESIELLRQCGID 129

Query: 134 FDRNRAEGADSRRFAELMMSSGLVCSDSVTWVTFHSAYDFGYLVKILTQRSLPDRLDEFL 193
           F +N  +G D  RF ELMMSSG+V +D+++WVTFH  YDFGYLVK+LT + LP +  +F 
Sbjct: 130 FKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQADFF 189

Query: 194 AVLRVFFGDYVYDVKHMMRFCSSLYGGLDRIAKTLNVNRAVGKCHQAGSDSLLTWHAFQK 253
            +L V+F   VYD+KH+M FC+ L+GGL+R+A+ + V R VG CHQAGSDSLLT  +F+K
Sbjct: 190 KLLYVYF-PTVYDIKHLMTFCNGLFGGLNRLAELMGVER-VGICHQAGSDSLLTLGSFRK 249

Query: 254 MRDTFFVQQDVEKHAGILYGLEV 277
           +++ +F     EK+ G+LYGL V
Sbjct: 250 LKERYF-PGSTEKYTGVLYGLGV 267

[Close]
BLAST of Sed0027529 vs. ExPASy TrEMBL
Match: A0A6J1CN71 (Poly(A)-specific ribonuclease OS=Momordica charantia OX=3673 GN=LOC111012547 PE=3 SV=1)

HSP 1 Score: 479.9 bits (1234), Expect = 6.9e-132
Identity = 230/278 (82.73%), Postives = 257/278 (92.45%), Query Frame = 0 

Query: 1   MVIEDLKNSNTKPIKIREVWAHNLESEFLFIRAVIDRFPCVSMDTEFPGIVFSDPARPH- 60
           MV++DLKN N+KPI+IREVWA NLESEF  IR +ID+FPCVSMDTEFPG+VF+DPA+P+ 
Sbjct: 1   MVVQDLKN-NSKPIQIREVWASNLESEFELIRDLIDQFPCVSMDTEFPGVVFTDPAKPYH 60

Query: 61  -QSRPSDHYRLLKSNVDALHLIQIGLTLSDSAGNLPDLGSDDARFIWEFNFMDFDVARDF 120
            Q+RPSDHYRLLKSNVDAL+LIQIG+TLSDS GNLPDLG+  +RFIWEFNFMDFDVARD 
Sbjct: 61  RQNRPSDHYRLLKSNVDALNLIQIGITLSDSDGNLPDLGTGGSRFIWEFNFMDFDVARDV 120

Query: 121 HSPDSIDLLRRQGIDFDRNRAEGADSRRFAELMMSSGLVCSDSVTWVTFHSAYDFGYLVK 180
           H+PDSI+LLRRQGIDFDRNR EG DS RFAELMMSSGLVC+DSV+WVTFHSAYDFGYLVK
Sbjct: 121 HAPDSIELLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVK 180

Query: 181 ILTQRSLPDRLDEFLAVLRVFFGDYVYDVKHMMRFCSSLYGGLDRIAKTLNVNRAVGKCH 240
           +LT+RSLP RL+EFL VLRVFFGD VYDVK+MMRFC SLYGGLDRIAK LNV+RAVGKCH
Sbjct: 181 VLTRRSLPSRLEEFLGVLRVFFGDQVYDVKYMMRFCKSLYGGLDRIAKILNVSRAVGKCH 240

Query: 241 QAGSDSLLTWHAFQKMRDTFFVQQDVEKHAGILYGLEV 277
           QAGSDSLLTWHAFQKMRDT+FVQ  +EKHAG+LYGLEV
Sbjct: 241 QAGSDSLLTWHAFQKMRDTYFVQNGLEKHAGVLYGLEV 277

[Close]
BLAST of Sed0027529 vs. ExPASy TrEMBL
Match: A0A6J1G223 (Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111449978 PE=3 SV=1)

HSP 1 Score: 468.0 bits (1203), Expect = 2.7e-128
Identity = 226/280 (80.71%), Postives = 248/280 (88.57%), Query Frame = 0 

Query: 1   MVIEDLKNSNTKPIKIREVWAHNLESEFLFIRAVIDRFPCVSMDTEFPGIVFSDPARPHQ 60
           MV  DL N++ K IKIREVWA NLESEF  IR +ID FPCVSMDTEFPGIVF+ P  P  
Sbjct: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN 60

Query: 61  S---RPSDHYRLLKSNVDALHLIQIGLTLSDSAGNLPDLGSDDARFIWEFNFMDFDVARD 120
           +     SDHY+LLKSNVDAL+LIQIG+TLSDS GNLPDLG+DD+RFIWEFNFMDFD+ARD
Sbjct: 61  ALNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARD 120

Query: 121 FHSPDSIDLLRRQGIDFDRNRAEGADSRRFAELMMSSGLVCSDSVTWVTFHSAYDFGYLV 180
            ++PDSIDLLRRQGIDFDRNR EG DS RFAELMMSSGLVC+DSV+WVTFHSAYDF YL+
Sbjct: 121 IYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLI 180

Query: 181 KILTQRSLPDRLDEFLAVLRVFFGDYVYDVKHMMRFCSSLYGGLDRIAKTLNVNRAVGKC 240
           KILTQ+SLP+RLDEFL VLRV FGD VYDVK+MMRFC SLYGGLDRIAK+LNVNRAVGKC
Sbjct: 181 KILTQKSLPNRLDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKC 240

Query: 241 HQAGSDSLLTWHAFQKMRDTFFVQQDVEKHAGILYGLEVF 278
           HQAGSDSLLTWHAFQKMRDTFFVQ +VEKHAG+LYGLE F
Sbjct: 241 HQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 280

[Close]
BLAST of Sed0027529 vs. ExPASy TrEMBL
Match: A0A6J1HU54 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111466603 PE=3 SV=1)

HSP 1 Score: 466.1 bits (1198), Expect = 1.0e-127
Identity = 225/280 (80.36%), Postives = 247/280 (88.21%), Query Frame = 0 

Query: 1   MVIEDLKNSNTKPIKIREVWAHNLESEFLFIRAVIDRFPCVSMDTEFPGIVFSDPARPHQ 60
           MV  DL N++ K IKIREVWA NLESEF  IR +ID FPCVSMDTEFPGIVF+ P  P  
Sbjct: 1   MVSHDLNNNHYKSIKIREVWASNLESEFQLIRDLIDHFPCVSMDTEFPGIVFTAPTAPFN 60

Query: 61  S---RPSDHYRLLKSNVDALHLIQIGLTLSDSAGNLPDLGSDDARFIWEFNFMDFDVARD 120
           S     SDHY+LLKSNVDAL+LIQIG+TLSDS GNLPDLG+DD+RFIWEFNFMDFD+ARD
Sbjct: 61  SLNRSSSDHYKLLKSNVDALNLIQIGITLSDSDGNLPDLGTDDSRFIWEFNFMDFDLARD 120

Query: 121 FHSPDSIDLLRRQGIDFDRNRAEGADSRRFAELMMSSGLVCSDSVTWVTFHSAYDFGYLV 180
            ++PDSIDLLRRQGIDFDRNR EG DS RFAELMMSSGLVC+DSV+WVTFHSAYDF YL+
Sbjct: 121 IYAPDSIDLLRRQGIDFDRNRVEGIDSCRFAELMMSSGLVCNDSVSWVTFHSAYDFAYLI 180

Query: 181 KILTQRSLPDRLDEFLAVLRVFFGDYVYDVKHMMRFCSSLYGGLDRIAKTLNVNRAVGKC 240
           KILTQ+ LP+R+DEFL VLRV FGD VYDVK+MMRFC SLYGGLDRIAK+LNVNRAVGKC
Sbjct: 181 KILTQKRLPNRVDEFLGVLRVLFGDNVYDVKYMMRFCKSLYGGLDRIAKSLNVNRAVGKC 240

Query: 241 HQAGSDSLLTWHAFQKMRDTFFVQQDVEKHAGILYGLEVF 278
           HQAGSDSLLTWHAFQKMRDTFFVQ +VEKHAG+LYGLE F
Sbjct: 241 HQAGSDSLLTWHAFQKMRDTFFVQNEVEKHAGVLYGLEAF 280

[Close]
BLAST of Sed0027529 vs. ExPASy TrEMBL
Match: A0A0A0LYC8 (Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_1G168920 PE=3 SV=1)

HSP 1 Score: 444.9 bits (1143), Expect = 2.5e-121
Identity = 213/278 (76.62%), Postives = 241/278 (86.69%), Query Frame = 0 

Query: 1   MVIEDLKNSNTKPIKIREVWAHNLESEFLFIRAVIDRFPCVSMDTEFPGIVFSDPARPHQ 60
           M+I DL N+N K I+IREVWA NLESEF  IR +ID+FPCVSMDTEFPG++F     P  
Sbjct: 1   MLIHDL-NTNHKSIQIREVWASNLESEFRLIRDLIDQFPCVSMDTEFPGVIFPQQDIPKS 60

Query: 61  -SRPSDHYRLLKSNVDALHLIQIGLTLSDSAGNLPDLGSDDARFIWEFNFMDFDVARDFH 120
            + PS HY+ LKSNVD LHLIQIG+TLSDS GNLPDLG+ D RFIWEFNF DFDVARD H
Sbjct: 61  PNHPSHHYQFLKSNVDLLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVARDLH 120

Query: 121 SPDSIDLLRRQGIDFDRNRAEGADSRRFAELMMSSGLVCSDSVTWVTFHSAYDFGYLVKI 180
           +P+SI+LLRRQGIDFDRNR EG DS RFAELMMSSGLVC+DSV+WVTFHSAYDFGYLVKI
Sbjct: 121 APNSIELLRRQGIDFDRNREEGIDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKI 180

Query: 181 LTQRSLPDRLDEFLAVLRVFFGDYVYDVKHMMRFCSSLYGGLDRIAKTLNVNRAVGKCHQ 240
           LT + LP  L++FL V+R+FFGD VYD+K++MRFC SLYGGLDRIAKT+NVNRAVGKCHQ
Sbjct: 181 LTHQKLPKDLEQFLGVVRLFFGDNVYDMKYLMRFCQSLYGGLDRIAKTMNVNRAVGKCHQ 240

Query: 241 AGSDSLLTWHAFQKMRDTFFVQQDVEKHAGILYGLEVF 278
           AGSDSLLTWHAFQKMRDTFFVQ ++ KHAG+LYGLEVF
Sbjct: 241 AGSDSLLTWHAFQKMRDTFFVQTEMHKHAGVLYGLEVF 277

[Close]
BLAST of Sed0027529 vs. ExPASy TrEMBL
Match: A0A5A7T1W0 (Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G001920 PE=3 SV=1)

HSP 1 Score: 444.1 bits (1141), Expect = 4.2e-121
Identity = 214/281 (76.16%), Postives = 241/281 (85.77%), Query Frame = 0 

Query: 1   MVIEDLK---NSNTKPIKIREVWAHNLESEFLFIRAVIDRFPCVSMDTEFPGIVFSDPAR 60
           M+I DL     S  KPI+IREVWA NL+SEF  I  +IDRFPCVSMDTEFPG++F    +
Sbjct: 1   MLIHDLNINHQSIHKPIQIREVWASNLDSEFRLISDLIDRFPCVSMDTEFPGVIFPQQTK 60

Query: 61  P-HQSRPSDHYRLLKSNVDALHLIQIGLTLSDSAGNLPDLGSDDARFIWEFNFMDFDVAR 120
           P   + PS HY+ LKSNVD LHLIQIG+TLSDS GNLPDLG+ D RFIWEFNF DFDVAR
Sbjct: 61  PKFPNHPSYHYQFLKSNVDVLHLIQIGITLSDSDGNLPDLGTGDTRFIWEFNFKDFDVAR 120

Query: 121 DFHSPDSIDLLRRQGIDFDRNRAEGADSRRFAELMMSSGLVCSDSVTWVTFHSAYDFGYL 180
           D H+PDSI+LLRRQGIDF+RNR EG DS RFAELMMSSGLVC++SV+WVTFHSAYDFGYL
Sbjct: 121 DPHAPDSIELLRRQGIDFERNREEGIDSSRFAELMMSSGLVCNESVSWVTFHSAYDFGYL 180

Query: 181 VKILTQRSLPDRLDEFLAVLRVFFGDYVYDVKHMMRFCSSLYGGLDRIAKTLNVNRAVGK 240
           VKILTQ+ LP  L+EFL V+RVFFGD VYD+K+MMRFC SLYGGLDRIAKT+NVNRAVGK
Sbjct: 181 VKILTQQKLPKGLEEFLGVVRVFFGDNVYDMKYMMRFCQSLYGGLDRIAKTMNVNRAVGK 240

Query: 241 CHQAGSDSLLTWHAFQKMRDTFFVQQDVEKHAGILYGLEVF 278
           CHQAGSDSLLTWHAFQKMRDTFFV+ ++ KHAG+LYGLEVF
Sbjct: 241 CHQAGSDSLLTWHAFQKMRDTFFVENEMHKHAGVLYGLEVF 281

[Close]
BLAST of Sed0027529 vs. TAIR 10
Match: AT3G44260.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 386.7 bits (992), Expect = 1.5e-107
Identity = 191/276 (69.20%), Postives = 220/276 (79.71%), Query Frame = 0 

Query: 8   NSNTKP----IKIREVWAHNLESEFLFIRAVIDRFPCVSMDTEFPGIVFSDPARPHQSRP 67
           N + KP    +  REVWA NLESEF  I  +ID +P +SMDTEFPG++F    R   + P
Sbjct: 7   NRDLKPDGVTVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLR--FTNP 66

Query: 68  SDHYRLLKSNVDALHLIQIGLTLSDSAGNLPDLGSDDAR-FIWEFNFMDFDVARDFHSPD 127
            D Y LLK+NVDAL LIQ+GLTLSD  GNLPDLG D  R FIWEFNF DFDVARD H+PD
Sbjct: 67  DDLYTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPD 126

Query: 128 SIDLLRRQGIDFDRNRAEGADSRRFAELMMSSGLVCSDSVTWVTFHSAYDFGYLVKILTQ 187
           SI+LLRRQGIDF+RN  +G +S RFAELMMSSGLVC++ V+WVTFHSAYDFGYL+KILT+
Sbjct: 127 SIELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTR 186

Query: 188 RSLPDRLDEFLAVLRVFFGDYVYDVKHMMRFCS-SLYGGLDRIAKTLNVNRAVGKCHQAG 247
           R LP  L EF  V+RV FG+ VYDVKHMM+FC   L+GGLDR+A+TL VNRAVGKCHQAG
Sbjct: 187 RELPGALGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAG 246

Query: 248 SDSLLTWHAFQKMRDTFFVQQDVEKHAGILYGLEVF 278
           SDSLLTWHAFQ+MRD +FVQ   EKHAG+LYGLEVF
Sbjct: 247 SDSLLTWHAFQRMRDLYFVQDGPEKHAGVLYGLEVF 280

[Close]
BLAST of Sed0027529 vs. TAIR 10
Match: AT5G22250.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 385.6 bits (989), Expect = 3.4e-107
Identity = 186/267 (69.66%), Postives = 221/267 (82.77%), Query Frame = 0 

Query: 14  IKIREVWAHNLESEFLFIRAVIDRFPCVSMDTEFPGIVF-SDPARPHQSRPSDHYRLLKS 73
           I IR+VWA+NLESEF  IR +++ +P +SMDTEFPG+++ +D     +  P+  Y LLKS
Sbjct: 12  IVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYNLLKS 71

Query: 74  NVDALHLIQIGLTLSDSAGNLPDLGSD-DARFIWEFNFMDFDVARDFHSPDSIDLLRRQG 133
           NVDAL LIQ+GLTLSD+ GNLPDLG   + R+IWEFNF DFDV RD H+PDSI+LLRR G
Sbjct: 72  NVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHG 131

Query: 134 IDFDRNRAEGADSRRFAELMMSSGLVCSDSVTWVTFHSAYDFGYLVKILTQRSLPDRLDE 193
           IDF+RNR EG +S RFAELMMSSGL+C++SV+WVTFHSAYDFGYLVKILT+R LP  L E
Sbjct: 132 IDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVALRE 191

Query: 194 FLAVLRVFFGDYVYDVKHMMRFCSS-LYGGLDRIAKTLNVNRAVGKCHQAGSDSLLTWHA 253
           FL +LR FFGD VYDVKH+MRFC   LYGGLDR+A++L VNRAVGKCHQAGSDSLLTW A
Sbjct: 192 FLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLTWQA 251

Query: 254 FQKMRDTFFVQQDVEKHAGILYGLEVF 278
           FQ+MRD +FV+   EKHAG+LYGLEVF
Sbjct: 252 FQRMRDLYFVEDGAEKHAGVLYGLEVF 278

[Close]
BLAST of Sed0027529 vs. TAIR 10
Match: AT2G32070.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 289.7 bits (740), Expect = 2.6e-78
Identity = 143/263 (54.37%), Postives = 195/263 (74.14%), Query Frame = 0 

Query: 14  IKIREVWAHNLESEFLFIRAVIDRFPCVSMDTEFPGIVFSDPARPHQSRPSDHYRLLKSN 73
           I+IREVW  NLESE   IR V+D FP V+MDTEFPGIV   P    ++    HY  LK+N
Sbjct: 10  IQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIV-CRPVGTFKTNTEYHYETLKTN 69

Query: 74  VDALHLIQIGLTLSDSAGNLPDLGSDDARFIWEFNFMDFDVARDFHSPDSIDLLRRQGID 133
           V+ L +IQ+GLT SD  GNLP  G+D+   IW+FNF +FD+  D ++ DSI+LLR+ GID
Sbjct: 70  VNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGID 129

Query: 134 FDRNRAEGADSRRFAELMMSSGLVCSDSVTWVTFHSAYDFGYLVKILTQRSLPDRLDEFL 193
           F +N   G DS+RFAEL+MSSG+V +++V WVTFHS YDFGYL+K+LT ++LP+    F 
Sbjct: 130 FVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQTGFF 189

Query: 194 AVLRVFFGDYVYDVKHMMRFCSSLYGGLDRIAKTLNVNRAVGKCHQAGSDSLLTWHAFQK 253
            ++ V+F   VYD+KH+M+FC+SL+GGL+++A+ L+V R VG CHQAGSDSLLT   F+K
Sbjct: 190 EMISVYF-PRVYDIKHLMKFCNSLHGGLNKLAELLDVER-VGICHQAGSDSLLTSCTFRK 249

Query: 254 MRDTFFVQQDVEKHAGILYGLEV 277
           +++ FF+   +EK++G+LYGL V
Sbjct: 250 LQENFFI-GSMEKYSGVLYGLGV 268

[Close]
BLAST of Sed0027529 vs. TAIR 10
Match: AT1G80780.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 278.1 bits (710), Expect = 7.7e-75
Identity = 140/263 (53.23%), Postives = 191/263 (72.62%), Query Frame = 0 

Query: 14  IKIREVWAHNLESEFLFIRAVIDRFPCVSMDTEFPGIVFSDPARPHQSRPSDHYRLLKSN 73
           I+IREVW  NL+ E   IR V+D FP V+MDTEFPGIV   P    +S    HY  LK+N
Sbjct: 10  IQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVR-PVGTFKSNADYHYETLKTN 69

Query: 74  VDALHLIQIGLTLSDSAGNLPDLGSDDARFIWEFNFMDFDVARDFHSPDSIDLLRRQGID 133
           V+ L +IQ+GLT S+  GNLP  G+ D   IW+FNF +FD+  D  + DSI+LL++ GID
Sbjct: 70  VNILKMIQLGLTFSNEQGNLPTCGT-DKYCIWQFNFREFDLDSDIFALDSIELLKQSGID 129

Query: 134 FDRNRAEGADSRRFAELMMSSGLVCSDSVTWVTFHSAYDFGYLVKILTQRSLPDRLDEFL 193
             +N  +G DS+RFAEL+MSSG+V +++V WVTFHS YDFGYL+K+LT ++LPD   +F 
Sbjct: 130 LAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFF 189

Query: 194 AVLRVFFGDYVYDVKHMMRFCSSLYGGLDRIAKTLNVNRAVGKCHQAGSDSLLTWHAFQK 253
            ++ V+F   VYD+KH+M+FC+SL+GGL+++A+ L V R VG CHQAGSDSLLT   F+K
Sbjct: 190 KLINVYF-PTVYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTSCTFRK 249

Query: 254 MRDTFFVQQDVEKHAGILYGLEV 277
           +++ FFV   + K++G+LYGL V
Sbjct: 250 LKENFFV-GPLHKYSGVLYGLGV 267

[Close]
BLAST of Sed0027529 vs. TAIR 10
Match: AT1G80780.2 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 278.1 bits (710), Expect = 7.7e-75
Identity = 140/263 (53.23%), Postives = 191/263 (72.62%), Query Frame = 0 

Query: 14  IKIREVWAHNLESEFLFIRAVIDRFPCVSMDTEFPGIVFSDPARPHQSRPSDHYRLLKSN 73
           I+IREVW  NL+ E   IR V+D FP V+MDTEFPGIV   P    +S    HY  LK+N
Sbjct: 10  IQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVR-PVGTFKSNADYHYETLKTN 69

Query: 74  VDALHLIQIGLTLSDSAGNLPDLGSDDARFIWEFNFMDFDVARDFHSPDSIDLLRRQGID 133
           V+ L +IQ+GLT S+  GNLP  G+ D   IW+FNF +FD+  D  + DSI+LL++ GID
Sbjct: 70  VNILKMIQLGLTFSNEQGNLPTCGT-DKYCIWQFNFREFDLDSDIFALDSIELLKQSGID 129

Query: 134 FDRNRAEGADSRRFAELMMSSGLVCSDSVTWVTFHSAYDFGYLVKILTQRSLPDRLDEFL 193
             +N  +G DS+RFAEL+MSSG+V +++V WVTFHS YDFGYL+K+LT ++LPD   +F 
Sbjct: 130 LAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFF 189

Query: 194 AVLRVFFGDYVYDVKHMMRFCSSLYGGLDRIAKTLNVNRAVGKCHQAGSDSLLTWHAFQK 253
            ++ V+F   VYD+KH+M+FC+SL+GGL+++A+ L V R VG CHQAGSDSLLT   F+K
Sbjct: 190 KLINVYF-PTVYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTSCTFRK 249

Query: 254 MRDTFFVQQDVEKHAGILYGLEV 277
           +++ FFV   + K++G+LYGL V
Sbjct: 250 LKENFFV-GPLHKYSGVLYGLGV 267

The following BLAST results are available for this feature:
BLAST of Sed0027529 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038877224.15.8e-13383.87probable CCR4-associated factor 1 homolog 11 [Benincasa hispida][more]
XP_022142408.11.4e-13182.73probable CCR4-associated factor 1 homolog 11 [Momordica charantia][more]
XP_023541056.11.8e-12981.14probable CCR4-associated factor 1 homolog 11 [Cucurbita pepo subsp. pepo][more]
XP_022945861.15.6e-12880.71probable CCR4-associated factor 1 homolog 11 [Cucurbita moschata] >KAG6573637.1 ... [more]
XP_022967098.12.1e-12780.36probable CCR4-associated factor 1 homolog 11 [Cucurbita maxima][more]
BLAST of Sed0027529 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LXM22.2e-10669.20Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana OX=3702 GN=C... [more]
Q9FMS64.8e-10669.66Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana OX=3702 GN=... [more]
Q9SKZ23.6e-7754.37Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=C... [more]
Q9SAI21.1e-7353.23Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=C... [more]
Q9LEU44.6e-7251.71Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana OX=3702 GN=... [more]
BLAST of Sed0027529 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CN716.9e-13282.73Poly(A)-specific ribonuclease OS=Momordica charantia OX=3673 GN=LOC111012547 PE=... [more]
A0A6J1G2232.7e-12880.71Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111449978 PE=3... [more]
A0A6J1HU541.0e-12780.36Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111466603 PE=3 S... [more]
A0A0A0LYC82.5e-12176.62Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_1G168920 PE=3 SV... [more]
A0A5A7T1W04.2e-12176.16Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
BLAST of Sed0027529 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G44260.11.5e-10769.20Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
AT5G22250.13.4e-10769.66Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
AT2G32070.12.6e-7854.37Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
AT1G80780.17.7e-7553.23Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
AT1G80780.27.7e-7553.23Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 2..276
e-value: 9.9E-96
score: 322.0
IPR006941Ribonuclease CAF1PFAMPF04857CAF1coord: 19..141
e-value: 2.3E-7
score: 30.4
IPR006941Ribonuclease CAF1PFAMPF04857CAF1coord: 165..247
e-value: 1.4E-5
score: 24.6
IPR039637CCR4-NOT transcription complex subunit 7/8/Pop2PANTHERPTHR10797CCR4-NOT TRANSCRIPTION COMPLEX SUBUNITcoord: 7..276
NoneNo IPR availablePANTHERPTHR10797:SF10CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATEDcoord: 7..276
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 16..274

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0027529.1Sed0027529.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043928 exonucleolytic catabolism of deadenylated mRNA
biological_process GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic
cellular_component GO:0030015 CCR4-NOT core complex
cellular_component GO:0005634 nucleus
cellular_component GO:0000932 P-body
cellular_component GO:0030014 CCR4-NOT complex
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004535 poly(A)-specific ribonuclease activity