Sed0027520 (gene) Chayote v1

Overview


Name	Sed0027520
Type	gene
Organism	Sechium edule (Chayote v1)
Description	DNA-directed RNA polymerase III subunit RPC3
Location	LG07: 7478874 .. 7487987 (-)
RNA-Seq Expression	Sed0027520
Synteny	Sed0027520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAAATAATATTAACCGTACAAAAAAAACCCTGGATTTTCTTTTGCTCCATCGCCGTCCGGCTTCCACAACCAGTTGTTCGCCGGCGATGGTTTTGAATCTTCTTCCGAACAATCTTCGATCATCATTCTTACACCAGAGCTCGAGTTCTTAACCCAAACGCCTCTCGGATTACTCTCTTCTTCAGATTCTTGCCGGTTCAATTGTCTTCCACTCCAGTTTCTGCTGAATCCGTGCTTCGTCAACGTCGATTCCAATCACTTCACAATATGCTTTGATATCATAGACGCAAATCAACCATGGTGATGACTCCGTACGGCATCAAATACGCCGTCCACATTATCACTGCGCACTTCGGCAATCTCGTAGCGGTTTGTATGCCCTTTCTTCGATTCAAATCTTGGTTCCTGTGAAATTATGTTCCATGTTCTTCTTTTCATCATTGCTGTTCATCCTTGTTTTTTTGTGCATTTACAGAAAGTGTGCGAAACCCTGCTCCGGAAGGGGCCTCTGACATTGAGCCTTCTTGTGCGATTCACGGAACTGAGTTCATCACAGGTCAACAACTCCCTTCTTATTCTCATCCAACACAATTGCGTTCAAGCCTGCACTGCTGTCACGGAAGGTACAATGTGTTTTTATTTAAGGATAAAGTTCTGGCCTCTGGGTCTATGGTATTTCATATTTGTTTGGTTAATTACTCACGAGGTAAAAGCAGAACTAACCTGTTATGAAATCGGAACAACAATCAAGATGAAATAGCAAGAAAACGGGAGAGAGAACACGATGATAACCATCATGTAGTGGCACGAGTGGTCAAACAAGACCTTCGGGTGCATAAGGTAATGAGTTCAATTCATGGTGGCCACCTACTTTGGAATTAATTTTTTACGGGTTTTCTTGACGTCCAAATGTTGTAGGGTCAGGCGGTATGTCCTCTGACGTTAGTTGAGCTGTGGGCAAGTTGGCCCGAACAATCACACATATAAAAAATATAAAAAAAAGAAGAGAGAGAGAAAACACCATGATTTACGTGGTTATTAAGAGTGTGTAAGCTATGCCAAGAGAGAACAGTTTTATTAATCTTGTAGATACATAATGCTGATCAAGTGAGACTAGGATTTTAAGAGAGTTTGTATAGTGCACTCTCGTAAAACTCTATTACAAAATATGACCAAAATACATAAAAGTCTAAATACGAAAACATAAATTCAATTACAAATTTCATAGGCATATTTCAACAGAACTTATTTATTTATTATTATTTTTCTTATTTTTGTGAATCTTAGAATAGCATTAAGTTTCATCAAGGTGATATAACTCACCATCATGGGTAGTCCAGTTATGAGTTCAATCTAGGGTGGTCACCTTGCTAAGAATTAATTTCCTACATGTTTCTTGACATCAAAATATCGTAGAATCAAATGTTGTATCTCGTGAGAATAGTTGAGATGTATATATGTTGGTCCGGACACTCATACAACATTTGATGGGATTATAGTGTCATCTGAAAGATCTTATATATGCTCAGTTTAAGCCCATTAGTTTTTAAAATTTATTATATTTGATAGGAAGTAATCATATTGATACACTGGGTGATAATTAGTTGTTTTAAGAAGTTAGTTGTATTCTCGAAAAGCATACCATGTGTTTGGAATTGAGCTTCTTATCATTTTTGTTGATGTAATTGCTTGTGTAGGTGAGTTTGGAGATGCAACCAAGGCTGACACACAATACTTGGCGTTGTTTAGTAATATACTTCATCGTATGAGGTTTCCCAAATTCCTGGCAATTGCTTGGGAAAAGCTTGATAAAGATAAAGATGTTTGTTTGTTTACTCACATTGGAAAAAAACTGTCTTGTCGAGAATTTCCAACTTGAATGAATTTAACAAGTGTTTCTGATTTTGTAGTGTGTAGAACTTCTTGAGGGTCTCCTGCAGAATGGTAGGCTTTCAATGGAACAAATAATTGAAAGAGCAAAGTCCAGTAAACAAGCAGGCAAGTTTGTAACCTGATGTTTTTATTTGCATGCTACTATTTTCTTCTATCTTCTTTATTATTTAATATGCTACTTTCTCCCAGTGCCATAAAATAGTGTACTGATTTCAAATTTTAAATGGAATGTTATCAAACATAACAAGGAGAATTTAAGATTGATGGATCCAATAGATCGCATTCTGTCAAGAAGGAAGCCAAGCTATAAGAAGCAAAGACAATTTACACTTAGAAACAACATGGTAAAAACAACGTCAAAAATTATTAAGAGGAAACTCCTTCCTTAGCCAGGAAATTTTTGGATCCATTCTTTCACATAATCCCGCCCCCCCAAAAAAAAAAAAAAAAATCCCTGATGAGGTTCAGGTTCTTCCACAAAAGAAACAAACTTGTTTTTCTTTCAACCTTATCATGTTTAAAATAGTAATATTGGTCCTTACAAAACTGTGATACCTTTTGTTGAACATAAACAACCATATTAATGAAGAAATAACATAAATTAGGAGGCTTTTGCACTGAGAATGTGTTTATGACTTGTTTTGCTTATAATATATTTACTTATGCAAACGTCTGGTTTCTGTATTTTCAGGAAATCGTCCAATTCCAGATGTTGCACATGAAAGTCTATTTAAACTTTTGACTGCCCATTTTGTTGAACGCTGTCCAGCCCCTGTACCAACTCTTTCACCCCAAGTTGAAGAACAGCCTCCTAGGAAAAGAGGTGCTAAGGCTGCCAAGGTAGCCGTGCCATGCATGTCTGTGAATCTTTTCATGCATATTGGTACTAAATACTATGTTTGAGTCATTAAATGGATCCATGGCAGGTATCTGAGGTGCCGGCAACGTTGGAACAGCGTGTTATAGAAGCATCACGACCCATGGAAGTTAAAAGATTTTCAATAGGTGAAACCAACACTGAAGCTGAAAAGAGTGGACGTTGTTCACCAATTTCTGGACAGAAAGTATGCATGAGAATTTTAATCAAATTACCAAGTTGAAACATGGTTAGTTCATGCTCACAATTTTTTTGTAGCGCAAGCGCGATGATCTGGAGATGATACAAGAGTCTACAGATGCAGATGGTGTTATTCTTTGGCGTGCAAACTTTGATGAGTTTATAAGATGTCTTAGGCATAAGGTTAGTATTAATATCCATCGGAATTTCTTATACATTCTAACTAGGTGATACGAAATTGCAGTAAATTTTATGCCCTTTTCTTATTTTCACATTAATGACGAGAAAAAATCAGGCATGACAAACAAGACCAATTTAATTTAACTCACTTGAAACCTATTGATAAGAGTACTTCAGGGTGCAACTTTTGCAGGTATATTGATATTAGCCTCTTCTTTTTTTTTTTTAATAATATATGTAATTTAACTGGAAAAAGAAGCACAACCTAGATTACTAAAAAAAACACATCTAAACAGAGTTTTGGCTGCAACTCTCCATTTCTAATTACTCAAAATAACTCCTCATCCAAAACGTCATCCAAACACCTCCTTTATGTGTTAATTGACTCTGCTCTTCTTGCTCTTTCCTTGATGTTTTTTTTGTTTCTTTTGATAAACTTGCCTTTTTTATTTTGTGCTAGTATTGGAAATTTACTAGATGTCTGATGGTAAATTCAAGTGGTAATTGCATTAACATCTTTCTATGGCTCTAGACTTGCATTGATCATGTCAGATCACAGTTTGATGACGGAGTGGTGAATGTCTTGAGTGCCATTTTGGAGTCTACTCGAAGTTCTGAAAAAATCGTGAAAACAGAGATAACAGGTACGATCTTTTTTTTTTGTTGGGACTAGAATTTAAAGAATTGTTTGGGCACTCTTTCAAAAACAAATCTATATTTTCAAAATAAAAATTAGTGAAATCATGTTGGCTTAATTACTTTTTCAGATTTTCTCATGTTTTCTTTTAGTTTGGTTTTTAAAGGTGATTTGTTTTTCAGAACAATTGAAATTATCTTTTCTAACTATTGTCTTGTAAAAAATAATAAAGTTCAGAACAAAGTAAACTTTATGAACCTTCTTCTTTTAATATTAAATTAAAAGCAGATAGCTGTTTTTCAAATGATTCATGATTTGGAAATTTTCAGTGTTATCCTTTACCGCCTGTGTGTATGGCTTCTGTTCTAAAAATTTAATTGTTCGCAGCTCCTTTATCATTGGAGAACATATATGAGGAGGTATTAAAGAATGAAGTAGGACGTAGTATAAACTTAGATCGGGTTGAAGCTTCTCTCTCTGCATTGGGTTGTTCAGGGATGGAAGATTATGAAATTAGTATGTTCACCCACGGTTAATCTAAGTTTTCCCAATATGTTTTCTTTTCACACTTCCCATTTGATTTACTTAAGTTTCTTCTAAAAACCATTGCTTGCACAGATTTACAGAAGATCATCGAGCAAGCTCAAATTGATGAGGTTTCTACTTCCCTGTCATTTTTTTAGTGAAAAATACACCTTTGTTCCCTGGCATTTTAGAAACTGTCTTCGTTCTAAATTTTACAAATGACGTCTTAGTTGCTTGCACAATCAGTTGAATTTCTAATCTGAGCTAATTTGCTAGCAAGCACGATTCTTCTCTTATCCCTTGCACTTTCAGGAATGGATCATTTATTATGAACTACCTTCTCTTGATTGCAGGTTGAATCAGTTGTTTTGAAAAAGTATGGAAGAGATGCTTACAGAATGTTCAGATTCCTATCAAAAACTGGTGACTTGGTTGAGACAGAAAGGGTGAGTTTTCGGTCAGTTGGTTGCACTCAAGGTTGTCTAACTACTTAAAAGCATATGAGCATTATACATATCATTTCATCTAGAAATGTATATAATTTACAAGTGAATGCAAATAACATACTGTCTCCGTACATTTTCTCTCTCCACAAAATGTTCTCAAACTTTACAAAACCTAGCCGTTAGCAACCCTTTTCCTCTGACGCACCTTTGTCTTCACCTGCTGAAGCATCTCCCAATTGGCGTACCTTTCTCTTCACCTGTTGGAGCTTCCTTTCCCCATCAATGCAGAGCACGACTCCAGCTCCAGTGACACACTCTCTCTCCTTCTCCCGTGAGTGTGGCTCTGTCTGTGCCTCGACGAGAAACCCCCAATCTCATTTACCTCCACGACCACCTTCCTTGAGAAGTACGAGCTACAAAACCTCGCTTGTCTAACTTCACTGGGATTGTTCTCCCTTTTCTGTCATTGATGAAGTATTCACAAAAACCCCATTGACCATCTTTTCTCCTTTGTTTTCCTTCTTCCTCCATCAACCTAGTCGCATCGTCGTCGATCTAATCTTGCTCGCGTATATCACCACTATTTTCTCCCTGAACATGTATCTTCTCCGACATAGTCACCTTATCTTATTCGGTGTCCATTATACCGAGCCGCCGCCAAGATCCACATCACACAATGGAACCTTGCCCGACTGCTTCATCCCGGTACCCTTGCATTGCTTCTATTCTTACCCATCTTGTCTTACAGATTTTGCTGACATCTACCTCAATATTTTATATCCTTCGAGCATTGACAACCCTGATTTGCTTTATCTTCGTCGAGCAAGAGAGTTAGGAATTCCTGATTTACTTTAAACACAAAGAACGTGGGGTACAACAAGAGTGACATTGATGCATTCTTCTACCGAATAGGGATCATGTATTTCCAGCTTTGCTGGGCCAATGGGTTTCTCTTTTTCAACAAATATGCACCCTACATACTTTGTCCGTCAGTTATATGGGATTCTCGCATTTTCCTCCATTTTACAATTGCCCTGTATATCGGCTAGTGTTTATCGACCTCCTCCCCATTTCTCTACTATCTTTCTTTCTACCAGCCGTTTCAATAGGTTTATGTAACACTTTCACAAATCAATGAGATTGTATTTGTTTTCTAGATGTGTAACTGATTCATGAGATAATCACCCGGATGCACAAGTCCTCCCATCTTATGATTATGTTTGGAGTTCAACTTCCCGAGAACTACAATTTTTTTTTGGTTTTCGAATTATCATATTGTAAAAAAGGCTAAGAACTTAGCCCATTCTGTGTAATGTTTTTATTTTATCAATGAAAATGCTTTTTTTTTTCCTATAAAAAAAATACATAGGAATATTGATGCATAATTATACAGTTGATTTTAAAATACATGTTGAGCAATAAGTTGAGTAAAAAACTAATCATATTATGGGTTAACCTTACCATTAGTTGTCTTGTCATTTTAATCTATGAAGATTACATGGAAATTTTATTTTTATTCTTAGTATTTTGGAATTGGCTATTTGTTAAAAAAAAAATTTGTTTATTTAATTTACAGACATTTCTTTTTTTTTCTGCAGATTTCTGACAAGTCATTTGTCGATAAGAATGAGGCGCCTAAAATTCTATACAGGCTGTGGAAGGATGAGTACCTATACATGGAGGTAAACATTTTTGCTCTGTATGCTTGTGTTTTTGCATCCAAATGCAGATATTTACTTACTTTAAGCAAGGATACCATAGTCCGGTTTTTCCTAACAAGAAGCGTGACAATTATCTTTGATAGAGTTGAAAAACACAAAGTGGACCATGGAGTAAGCAAGAATACCATACTGGATTGCTTGTTTGCGTCTGATGTCATAGGACGTAATGATTTTCACAATTTTAGTTAAATGCTCAAGATAATTGTGTGTAAACCATTGGACAAAAGTTGGAAAAAGTATTAAAAGTATAGTTAATGTTTGATCAGATATCTGTTAGGACTCCCATTCCATTCAACATTCTAGAAAGGGCAAATTGGGTAATTCCATAATAGGGTTTTTGTGAGATTGTGGTTTGATCCTTTAGGGTATAAATAAGACCAAGAAGGGTTTAGAGGACAGGCTGATTTTGATGAAGGCTAAGTCATAGGACTTGGAGGAGAGGTTCCGGTGGCTCTCGAACATCACCGGTTAGCTATCATATTTTATTGTTGTTATCCTTTTATCTTCTATATTGTATCTAGTTATGGCTATTGGAGTTTGTAATGGAGTAATTGCTGGATTATGAACGTTATATATGATATATTGAGGTTTCATACTGTTATTTCCTTGTTATCTGTGTTTGGTAATATTCGGTAAGTATTCTGGAACCCGTAAAGGTATCGATACCTTACAATATCATTATGTTTTCTCATCAGAATTGGTTGTTTAATAAGTAACTCTTTGCTCGTCGTTCATTTGAATTTTCTTTATAGACTTGTTACATGCCCTAAACCCTAAACCCTAAACCCAAGGGGTAGCACAGTGGTTGAAGACTTGGGTTTTGAGGATATGCTCCCTTCAAGGTCTCAGGTTCAAGATTTACCTGTGACATTATTCCTTTAATGTCTCCCGATTCCTAGCCTAGGGACAAGCGTGGTTACCCTTGTTTCAAAAATGAAAAACATGCATGTACAAATCTAATTCATTTCATGCCTGTCCTTATCTTATCTCTTACTCTTTCTTTTTTTCATTTATGTATCTATAAGCCTTTATCATACCCTATCTAATAAGAATGTGTTTTGTCTTTGCTTCTTCATTTCTGTATTATCTTGTACCAACACTGACTTAGCCATGGCCTTTACCTCTTGAACAATTTACATTTTTAATCTATTTGTGGGTTTGTTGGGCATCCAAGTAAAACATTGTATCTTTATTGCAGAAAGTAGCTATAACAGTACCTAAGCATACCATATGCTTGTTGTGGAGAGTAGACAGATATAATTTGTGGGAACATGTTCAGGATGAGATGTATCATGCTTCATTGAGCTTGCAGCTACGGCAGGCTTATGAAATGGAACAAGACAAAGAGGTTAGTGTGCTCAAAATGCTAACTCAATTCGTAATATGCAATTGTATGATATTAGTTTTTCTAGGCCAAGTGTGATTTTTCATCACTGATCAAAGAACTCTATCCTCAGTCAACAATACTACGTATTTCCTGCTAGAATACGTATTCCTCCTAGAAGAAATCAAGTAATTACTTTTGATGTTGTGTATCATTGGAGAACCTAAAAAATCAGGCCCGAGGCCCCTTCTAATTACCATTTTGTTCTTTTGTTTTGGTTTTTGAAAATTAAGCGTACAACATCTCCTCCAACCTATGATTTTCTTTACTTTGATATCTACATTTTATCTTGTTTATAAAAACTAAATCAAAATTTGAAAACAAAAAAAAAAGTAGCTTCTAAAAACTTGTTTTGGTTTTTAAAATTTGGTTAGGTTTCAAGTACTTCCTCAAGGTAGAAAAAACTCTTTGTAGAGAATTTGGGTGAAAACTAGGATTAGGCGGCGCCGTATTTCTCGTGACATTAGTCGAGGTGCGCGCAAGCTTGCCCGGAGACTCATGAATATAAATTAAAAAAAAACTTAGATTTTAAAAACAAAAAACTAAATAGTTATCAAACGGGGAGTTATCCTTTTGGTTTTAGCACATCTAACTGTCTGAGATGCCAAATGCAGGCTGCTTACTATTTTTTATCAATAATGTCTACAGGCCCGATTTTGTGGCTGAATGACAGGATACTTTGTATGTGAATCGAAGCGAAAACGCCTATTTTGTATAATTGCACCTTTAAGCTTATTGTTTATGGCGTTTGTCGTAGTTTGATTAATTGTGGCATGTTGCATTGTCCTTACAAAACTTGTATTGTATTGCCCTTGCTTAAATAAATAGTATTGGAATGAGTTTCTTTCGGTGGTTTTTTTTCTTTCTTTTTTCATGTCTTCTCACTGTCAGTATGTAGACATGTTCAAATGCTGACTTCTTGCTGTGACAACTCTTTTGCAGCTTCTTAATCTTCCACCAGACAACCGAGGTGGACCGCTCGAGAAAAGATATAATCGTTTGAGGAATGTCAGGTTACTCCTCGAGTCGTCGCTACTGAAGCTCGACGATGCTTTAATGCTTTTCCATGATTTCTAAATGAAGGATTTATATCAGTGGCTCTTTGGAGAGTGAATGTGGAGGAAGCTTTGCTCATCTTTCAGGCTTCAGAAGAAAATCATGGTTAGCAAACATTATTTTGCTTTAATAAAAAATGTAGGAATAATAACTAAGAAACAAGAAATGACCGTAAAAATTCGAAGTAGCAATCTAGTGTGTAGCTACAAATTGC

mRNA sequence

TAAAATAATATTAACCGTACAAAAAAAACCCTGGATTTTCTTTTGCTCCATCGCCGTCCGGCTTCCACAACCAGTTGTTCGCCGGCGATGGTTTTGAATCTTCTTCCGAACAATCTTCGATCATCATTCTTACACCAGAGCTCGAGTTCTTAACCCAAACGCCTCTCGGATTACTCTCTTCTTCAGATTCTTGCCGGTTCAATTGTCTTCCACTCCAGTTTCTGCTGAATCCGTGCTTCGTCAACGTCGATTCCAATCACTTCACAATATGCTTTGATATCATAGACGCAAATCAACCATGGTGATGACTCCGTACGGCATCAAATACGCCGTCCACATTATCACTGCGCACTTCGGCAATCTCGTAGCGGTTTAAAGTGTGCGAAACCCTGCTCCGGAAGGGGCCTCTGACATTGAGCCTTCTTGTGCGATTCACGGAACTGAGTTCATCACAGGTCAACAACTCCCTTCTTATTCTCATCCAACACAATTGCGTTCAAGCCTGCACTGCTGTCACGGAAGGTACAATGTGTTTTTATTTAAGGATAAAGTTCTGGCCTCTGGGTCTATGGTATTTCATATTTGTTTGGTTAATTACTCACGAGGTAAAAGCAGAACTAACCTGTTATGAAATCGGAACAACAATCAAGATGAAATAGCAAGAAAACGGGAGAGAGAACACGATGATAACCATCATGTAGTGGCACGAGTGGTCAAACAAGACCTTCGGGTGCATAAGGTGAGTTTGGAGATGCAACCAAGGCTGACACACAATACTTGGCGTTGTTTAGTAATATACTTCATCGTATGAGGTTTCCCAAATTCCTGGCAATTGCTTGGGAAAAGCTTGATAAAGATAAAGATTGTGTAGAACTTCTTGAGGGTCTCCTGCAGAATGGTAGGCTTTCAATGGAACAAATAATTGAAAGAGCAAAGTCCAGTAAACAAGCAGGAAATCGTCCAATTCCAGATGTTGCACATGAAAGTCTATTTAAACTTTTGACTGCCCATTTTGTTGAACGCTGTCCAGCCCCTGTACCAACTCTTTCACCCCAAGTTGAAGAACAGCCTCCTAGGAAAAGAGGTGCTAAGGCTGCCAAGGTATCTGAGGTGCCGGCAACGTTGGAACAGCGTGTTATAGAAGCATCACGACCCATGGAAGTTAAAAGATTTTCAATAGGTGAAACCAACACTGAAGCTGAAAAGAGTGGACGTTGTTCACCAATTTCTGGACAGAAACGCAAGCGCGATGATCTGGAGATGATACAAGAGTCTACAGATGCAGATGGTGTTATTCTTTGGCGTGCAAACTTTGATGAGTTTATAAGATGTCTTAGGCATAAGACTTGCATTGATCATGTCAGATCACAGTTTGATGACGGAGTGGTGAATGTCTTGAGTGCCATTTTGGAGTCTACTCGAAGTTCTGAAAAAATCGTGAAAACAGAGATAACAGCTCCTTTATCATTGGAGAACATATATGAGGAGGTATTAAAGAATGAAGTAGGACGTAGTATAAACTTAGATCGGGTTGAAGCTTCTCTCTCTGCATTGGGTTGTTCAGGGATGGAAGATTATGAAATTAATTTACAGAAGATCATCGAGCAAGCTCAAATTGATGAGGTTGAATCAGTTGTTTTGAAAAAGTATGGAAGAGATGCTTACAGAATGTTCAGATTCCTATCAAAAACTGGTGACTTGGTTGAGACAGAAAGGATTTCTGACAAGTCATTTGTCGATAAGAATGAGGCGCCTAAAATTCTATACAGGCTGTGGAAGGATGAGTACCTATACATGGAGAAAGTAGCTATAACAGTACCTAAGCATACCATATGCTTGTTGTGGAGAGTAGACAGATATAATTTGTGGGAACATGTTCAGGATGAGATGTATCATGCTTCATTGAGCTTGCAGCTACGGCAGGCTTATGAAATGGAACAAGACAAAGAGCTTCTTAATCTTCCACCAGACAACCGAGGTGGACCGCTCGAGAAAAGATATAATCGTTTGAGGAATGTCAGGTTACTCCTCGAGTCGTCGCTACTGAAGCTCGACGATGCTTTAATGCTTTTCCATGATTTCTAAATGAAGGATTTATATCAGTGGCTCTTTGGAGAGTGAATGTGGAGGAAGCTTTGCTCATCTTTCAGGCTTCAGAAGAAAATCATGGTTAGCAAACATTATTTTGCTTTAATAAAAAATGTAGGAATAATAACTAAGAAACAAGAAATGACCGTAAAAATTCGAAGTAGCAATCTAGTGTGTAGCTACAAATTGC

Coding sequence (CDS)

ATGAGGTTTCCCAAATTCCTGGCAATTGCTTGGGAAAAGCTTGATAAAGATAAAGATTGTGTAGAACTTCTTGAGGGTCTCCTGCAGAATGGTAGGCTTTCAATGGAACAAATAATTGAAAGAGCAAAGTCCAGTAAACAAGCAGGAAATCGTCCAATTCCAGATGTTGCACATGAAAGTCTATTTAAACTTTTGACTGCCCATTTTGTTGAACGCTGTCCAGCCCCTGTACCAACTCTTTCACCCCAAGTTGAAGAACAGCCTCCTAGGAAAAGAGGTGCTAAGGCTGCCAAGGTATCTGAGGTGCCGGCAACGTTGGAACAGCGTGTTATAGAAGCATCACGACCCATGGAAGTTAAAAGATTTTCAATAGGTGAAACCAACACTGAAGCTGAAAAGAGTGGACGTTGTTCACCAATTTCTGGACAGAAACGCAAGCGCGATGATCTGGAGATGATACAAGAGTCTACAGATGCAGATGGTGTTATTCTTTGGCGTGCAAACTTTGATGAGTTTATAAGATGTCTTAGGCATAAGACTTGCATTGATCATGTCAGATCACAGTTTGATGACGGAGTGGTGAATGTCTTGAGTGCCATTTTGGAGTCTACTCGAAGTTCTGAAAAAATCGTGAAAACAGAGATAACAGCTCCTTTATCATTGGAGAACATATATGAGGAGGTATTAAAGAATGAAGTAGGACGTAGTATAAACTTAGATCGGGTTGAAGCTTCTCTCTCTGCATTGGGTTGTTCAGGGATGGAAGATTATGAAATTAATTTACAGAAGATCATCGAGCAAGCTCAAATTGATGAGGTTGAATCAGTTGTTTTGAAAAAGTATGGAAGAGATGCTTACAGAATGTTCAGATTCCTATCAAAAACTGGTGACTTGGTTGAGACAGAAAGGATTTCTGACAAGTCATTTGTCGATAAGAATGAGGCGCCTAAAATTCTATACAGGCTGTGGAAGGATGAGTACCTATACATGGAGAAAGTAGCTATAACAGTACCTAAGCATACCATATGCTTGTTGTGGAGAGTAGACAGATATAATTTGTGGGAACATGTTCAGGATGAGATGTATCATGCTTCATTGAGCTTGCAGCTACGGCAGGCTTATGAAATGGAACAAGACAAAGAGCTTCTTAATCTTCCACCAGACAACCGAGGTGGACCGCTCGAGAAAAGATATAATCGTTTGAGGAATGTCAGGTTACTCCTCGAGTCGTCGCTACTGAAGCTCGACGATGCTTTAATGCTTTTCCATGATTTCTAA

Protein sequence

MRFPKFLAIAWEKLDKDKDCVELLEGLLQNGRLSMEQIIERAKSSKQAGNRPIPDVAHESLFKLLTAHFVERCPAPVPTLSPQVEEQPPRKRGAKAAKVSEVPATLEQRVIEASRPMEVKRFSIGETNTEAEKSGRCSPISGQKRKRDDLEMIQESTDADGVILWRANFDEFIRCLRHKTCIDHVRSQFDDGVVNVLSAILESTRSSEKIVKTEITAPLSLENIYEEVLKNEVGRSINLDRVEASLSALGCSGMEDYEINLQKIIEQAQIDEVESVVLKKYGRDAYRMFRFLSKTGDLVETERISDKSFVDKNEAPKILYRLWKDEYLYMEKVAITVPKHTICLLWRVDRYNLWEHVQDEMYHASLSLQLRQAYEMEQDKELLNLPPDNRGGPLEKRYNRLRNVRLLLESSLLKLDDALMLFHDF

Homology

[Close]

BLAST of Sed0027520 vs. NCBI nr
Match: XP_022945853.1 (DNA-directed RNA polymerase III subunit RPC3 [Cucurbita moschata])

HSP 1 Score: 743.0 bits (1917), Expect = 1.4e-210
Identity = 376/426 (88.26%), Postives = 401/426 (94.13%), Query Frame = 0


Query: 1   MRFPKFLAIAWEKLDKDKDCVELLEGLLQNGRLSMEQIIERAKSSKQAGNRPIPDVAHES 60
           MRF KFLAIA EKL+KDKDC ELLEGLLQNGRLSMEQIIERAKSSK AGNRPIPDV +ES
Sbjct: 97  MRFSKFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNES 156

Query: 61  LFKLLTAHFVERCPAPVPTLSPQVEEQ-PPRKRGAKAAKVSEVPATLEQRVIEASRPMEV 120
           L KLL AHFVERCPAP PTLSPQVEEQ PPRKRGAKAAKVSEVP TLEQR++E++RPMEV
Sbjct: 157 LLKLLNAHFVERCPAPEPTLSPQVEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEV 216

Query: 121 KRFSIGETNTEAEKSGRCSPISGQKRKRDDLEMIQESTDADGVILWRANFDEFIRCLRHK 180
            RFSIGETNTEAE+S   S ISGQKRKR DL+MIQES DADG+ILWRANFDEF+RCLRHK
Sbjct: 217 IRFSIGETNTEAEESEHYSSISGQKRKRGDLDMIQESGDADGIILWRANFDEFVRCLRHK 276

Query: 181 TCIDHVRSQFDDGVVNVLSAILESTRSSEKIVKTEITAPLSLENIYEEVLKNEVGRSINL 240
            CI+HVRSQFDDG VNVLSAILE+TRSSEKIVKTEIT PLSL+NIYEEV+KNEVGRS+ L
Sbjct: 277 ACIEHVRSQFDDGAVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTL 336

Query: 241 DRVEASLSALGCSGMEDYEINLQKIIEQAQIDEVESVVLKKYGRDAYRMFRFLSKTGDLV 300
           DRVEASLSALGCSGMEDY+INLQKIIEQAQIDEVES+VLK+YGRDAYRMFRFLSKTG LV
Sbjct: 337 DRVEASLSALGCSGMEDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLV 396

Query: 301 ETERISDKSFVDKNEAPKILYRLWKDEYLYMEKVAITVPKHTICLLWRVDRYNLWEHVQD 360
           ETE+ISD +FVDKNEAPKILYRLWKDEYLYMEKVAITVP+H++CLLWRVDRYNLWEHV D
Sbjct: 397 ETEKISDSAFVDKNEAPKILYRLWKDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLD 456

Query: 361 EMYHASLSLQLRQAYEMEQDKELLNLPPDNRGGPLEKRYNRLRNVRLLLESSLLKLDDAL 420
           EMYHASL+LQLRQAYEMEQDKELLNLPPD RGGPLEKRYNRLRNVR+LLESSLLKLDDAL
Sbjct: 457 EMYHASLNLQLRQAYEMEQDKELLNLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDAL 516

Query: 421 MLFHDF 426
           MLFHDF
Sbjct: 517 MLFHDF 522

[Close]

BLAST of Sed0027520 vs. NCBI nr
Match: XP_022968436.1 (DNA-directed RNA polymerase III subunit RPC3 [Cucurbita maxima])

HSP 1 Score: 742.3 bits (1915), Expect = 2.4e-210
Identity = 377/426 (88.50%), Postives = 401/426 (94.13%), Query Frame = 0


Query: 1   MRFPKFLAIAWEKLDKDKDCVELLEGLLQNGRLSMEQIIERAKSSKQAGNRPIPDVAHES 60
           MRF KFLAIA EKL+KDKDC ELLEGLLQNGRLSMEQIIERAKSSK AGNRPIPDV +ES
Sbjct: 97  MRFSKFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNES 156

Query: 61  LFKLLTAHFVERCPAPVPTLSPQVEEQ-PPRKRGAKAAKVSEVPATLEQRVIEASRPMEV 120
           L KLL AHFVERCPAP PTLSPQVEEQ PPRKRGAKAAKVSEVP TLEQR++E++RPMEV
Sbjct: 157 LLKLLNAHFVERCPAPEPTLSPQVEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEV 216

Query: 121 KRFSIGETNTEAEKSGRCSPISGQKRKRDDLEMIQESTDADGVILWRANFDEFIRCLRHK 180
            RFSIGETNTEAE+S   S ISGQKRKR DL+MIQES DADG+ILWRANFDEFIRCLRHK
Sbjct: 217 IRFSIGETNTEAEESEHYSSISGQKRKRGDLDMIQESGDADGIILWRANFDEFIRCLRHK 276

Query: 181 TCIDHVRSQFDDGVVNVLSAILESTRSSEKIVKTEITAPLSLENIYEEVLKNEVGRSINL 240
            CI+HVRSQFDDG VNVLSAILE+TRSSEKIVKTEIT PLSLENIYEEV+KNEVGRS+ L
Sbjct: 277 ACIEHVRSQFDDGAVNVLSAILEATRSSEKIVKTEITVPLSLENIYEEVMKNEVGRSMTL 336

Query: 241 DRVEASLSALGCSGMEDYEINLQKIIEQAQIDEVESVVLKKYGRDAYRMFRFLSKTGDLV 300
           DRVEASLSALGCSGMEDY+INLQKIIEQAQIDEVES+VLK+YGRDAYRMFRFLSKTG LV
Sbjct: 337 DRVEASLSALGCSGMEDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLV 396

Query: 301 ETERISDKSFVDKNEAPKILYRLWKDEYLYMEKVAITVPKHTICLLWRVDRYNLWEHVQD 360
           ETE+ISD +FVDKNEAPKILYRLWKDEYLYMEKVAITVP++++CLLWRVDRYNLWEHV D
Sbjct: 397 ETEKISDSAFVDKNEAPKILYRLWKDEYLYMEKVAITVPRYSLCLLWRVDRYNLWEHVLD 456

Query: 361 EMYHASLSLQLRQAYEMEQDKELLNLPPDNRGGPLEKRYNRLRNVRLLLESSLLKLDDAL 420
           EMYHASL+LQLRQAYEMEQDKELLNLPPD RGGPLEKRYNRLRNVR+LLESSLLKLDDAL
Sbjct: 457 EMYHASLNLQLRQAYEMEQDKELLNLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDAL 516

Query: 421 MLFHDF 426
           MLFHDF
Sbjct: 517 MLFHDF 522

[Close]

BLAST of Sed0027520 vs. NCBI nr
Match: KAG6574180.1 (DNA-directed RNA polymerase III subunit RPC3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013236.1 DNA-directed RNA polymerase III subunit RPC3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 741.1 bits (1912), Expect = 5.3e-210
Identity = 376/426 (88.26%), Postives = 400/426 (93.90%), Query Frame = 0


Query: 1   MRFPKFLAIAWEKLDKDKDCVELLEGLLQNGRLSMEQIIERAKSSKQAGNRPIPDVAHES 60
           MRF KFLAIA EKL+KDKDC ELLEGLLQNGRLSMEQIIERAKSSK AGNRPIPDV +ES
Sbjct: 97  MRFSKFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNES 156

Query: 61  LFKLLTAHFVERCPAPVPTLSPQVEEQ-PPRKRGAKAAKVSEVPATLEQRVIEASRPMEV 120
           L KLL AHFVERCPAP PTLSPQVEEQ PPRKRGAKAAKVSEVP TLEQR++E++RPMEV
Sbjct: 157 LLKLLNAHFVERCPAPEPTLSPQVEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEV 216

Query: 121 KRFSIGETNTEAEKSGRCSPISGQKRKRDDLEMIQESTDADGVILWRANFDEFIRCLRHK 180
            RFSIGETNTEAE+S   S ISGQKRKR DL+ IQES DADG+ILWRANFDEFIRCLRHK
Sbjct: 217 IRFSIGETNTEAEESEHYSSISGQKRKRGDLDTIQESGDADGIILWRANFDEFIRCLRHK 276

Query: 181 TCIDHVRSQFDDGVVNVLSAILESTRSSEKIVKTEITAPLSLENIYEEVLKNEVGRSINL 240
            CI+HVRSQFDDG VNVLSAILE+TRSSEKIVKTEIT PLSL+NIYEEV+KNEVGRS+ L
Sbjct: 277 ACIEHVRSQFDDGAVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTL 336

Query: 241 DRVEASLSALGCSGMEDYEINLQKIIEQAQIDEVESVVLKKYGRDAYRMFRFLSKTGDLV 300
           DRVEASLSALGCSGMEDY+INLQKIIEQAQIDEVES+VLK+YGRDAYRMFRFLSKTG LV
Sbjct: 337 DRVEASLSALGCSGMEDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLV 396

Query: 301 ETERISDKSFVDKNEAPKILYRLWKDEYLYMEKVAITVPKHTICLLWRVDRYNLWEHVQD 360
           ETE+ISD +FVDKNEAPKILYRLWKDEYLYMEKVAITVP+H++CLLWRVDRYNLWEHV D
Sbjct: 397 ETEKISDSAFVDKNEAPKILYRLWKDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLD 456

Query: 361 EMYHASLSLQLRQAYEMEQDKELLNLPPDNRGGPLEKRYNRLRNVRLLLESSLLKLDDAL 420
           EMYHASL+LQLRQAYEMEQDKELLNLPPD RGGPLEKRYNRLRNVR+LLESSLLKLDDAL
Sbjct: 457 EMYHASLNLQLRQAYEMEQDKELLNLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDAL 516

Query: 421 MLFHDF 426
           MLFHDF
Sbjct: 517 MLFHDF 522

[Close]

BLAST of Sed0027520 vs. NCBI nr
Match: XP_023541704.1 (DNA-directed RNA polymerase III subunit RPC3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 740.7 bits (1911), Expect = 6.9e-210
Identity = 375/426 (88.03%), Postives = 400/426 (93.90%), Query Frame = 0


Query: 1   MRFPKFLAIAWEKLDKDKDCVELLEGLLQNGRLSMEQIIERAKSSKQAGNRPIPDVAHES 60
           MRF KFLAIA EKL+KDKDC ELLEGLLQNGRLSMEQIIERAKSSK AGNRP PDV +ES
Sbjct: 97  MRFSKFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQIIERAKSSKHAGNRPSPDVVNES 156

Query: 61  LFKLLTAHFVERCPAPVPTLSPQVEEQ-PPRKRGAKAAKVSEVPATLEQRVIEASRPMEV 120
           L KLL AHFVERCPAP PTLSPQVEEQ PPRKRGAKAAKVSEVP TLEQR++E++RPMEV
Sbjct: 157 LLKLLNAHFVERCPAPEPTLSPQVEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEV 216

Query: 121 KRFSIGETNTEAEKSGRCSPISGQKRKRDDLEMIQESTDADGVILWRANFDEFIRCLRHK 180
            RFSIGETNTEAE+S   S ISGQKRKR DL+MIQES DADG+ILWRANFDEFIRCLRHK
Sbjct: 217 IRFSIGETNTEAEESEHYSSISGQKRKRGDLDMIQESGDADGIILWRANFDEFIRCLRHK 276

Query: 181 TCIDHVRSQFDDGVVNVLSAILESTRSSEKIVKTEITAPLSLENIYEEVLKNEVGRSINL 240
            CI+HVRSQFDDG VNVLSAILE+TRSSEKIVKTEIT PLSL+NIYEEV+KNEVGRS+ L
Sbjct: 277 ACIEHVRSQFDDGAVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTL 336

Query: 241 DRVEASLSALGCSGMEDYEINLQKIIEQAQIDEVESVVLKKYGRDAYRMFRFLSKTGDLV 300
           DRVEASLSALGCSGMEDY+INLQKIIEQAQIDEVES+VLK+YGRDAYRMFRFLSKTG LV
Sbjct: 337 DRVEASLSALGCSGMEDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLV 396

Query: 301 ETERISDKSFVDKNEAPKILYRLWKDEYLYMEKVAITVPKHTICLLWRVDRYNLWEHVQD 360
           ETE+ISD +FVDKNEAPKILYRLWKDEYLYMEKVAIT+P+H++CLLWRVDRYNLWEHV D
Sbjct: 397 ETEKISDSAFVDKNEAPKILYRLWKDEYLYMEKVAITIPRHSLCLLWRVDRYNLWEHVLD 456

Query: 361 EMYHASLSLQLRQAYEMEQDKELLNLPPDNRGGPLEKRYNRLRNVRLLLESSLLKLDDAL 420
           EMYHASL+LQLRQAYEMEQDKELLNLPPD RGGPLEKRYNRLRNVR+LLESSLLKLDDAL
Sbjct: 457 EMYHASLNLQLRQAYEMEQDKELLNLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDAL 516

Query: 421 MLFHDF 426
           MLFHDF
Sbjct: 517 MLFHDF 522

[Close]

BLAST of Sed0027520 vs. NCBI nr
Match: XP_022141200.1 (uncharacterized protein LOC111011656 isoform X1 [Momordica charantia])

HSP 1 Score: 716.5 bits (1848), Expect = 1.4e-202
Identity = 360/426 (84.51%), Postives = 395/426 (92.72%), Query Frame = 0


Query: 1   MRFPKFLAIAWEKLDKDKDCVELLEGLLQNGRLSMEQIIERAKSSKQAGNRPIPDVAHES 60
           MRF KFLA+A EKL+KDK+C ELLEGLLQNGRLSMEQ++ERAKSSK AGNRPIPDV HES
Sbjct: 97  MRFSKFLAVASEKLEKDKNCEELLEGLLQNGRLSMEQLVERAKSSKHAGNRPIPDVVHES 156

Query: 61  LFKLLTAHFVERCPAPVPTLSPQVEEQ-PPRKRGAKAAKVSEVPATLEQRVIEASRPMEV 120
           LFKLLTAHFVERCPAP P LS QVEEQ PP+KRGAKAAK+SEVP TLEQR++  +RPMEV
Sbjct: 157 LFKLLTAHFVERCPAPEPILSAQVEEQPPPKKRGAKAAKISEVPETLEQRLVGVARPMEV 216

Query: 121 KRFSIGETNTEAEKSGRCSPISGQKRKRDDLEMIQESTDADGVILWRANFDEFIRCLRHK 180
            RFS+ ETNTEAEKS    PISGQKRK D+LE +QES DADG+ILWRANFDEFIRCLRHK
Sbjct: 217 LRFSMSETNTEAEKSE--LPISGQKRKHDELEAVQESGDADGIILWRANFDEFIRCLRHK 276

Query: 181 TCIDHVRSQFDDGVVNVLSAILESTRSSEKIVKTEITAPLSLENIYEEVLKNEVGRSINL 240
            CI+HVRSQFDDGVVNVLSAILE+TRSSEK VKTEIT PLSL+NIYEEV+KNEVGRS+ L
Sbjct: 277 ACIEHVRSQFDDGVVNVLSAILEATRSSEKTVKTEITVPLSLDNIYEEVMKNEVGRSMTL 336

Query: 241 DRVEASLSALGCSGMEDYEINLQKIIEQAQIDEVESVVLKKYGRDAYRMFRFLSKTGDLV 300
           DRVEASLSALGC GM+DY+INL+KIIEQAQI+EVES+VLK+YGRDAYRMFRFLS+TG LV
Sbjct: 337 DRVEASLSALGCPGMDDYKINLRKIIEQAQIEEVESIVLKRYGRDAYRMFRFLSRTGGLV 396

Query: 301 ETERISDKSFVDKNEAPKILYRLWKDEYLYMEKVAITVPKHTICLLWRVDRYNLWEHVQD 360
           ETE+ISD SFVDKNEAPKILYRLWKDEYLYMEKVA+T P+H++CLLWRVD+YNLWEHV D
Sbjct: 397 ETEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVALTGPRHSLCLLWRVDKYNLWEHVLD 456

Query: 361 EMYHASLSLQLRQAYEMEQDKELLNLPPDNRGGPLEKRYNRLRNVRLLLESSLLKLDDAL 420
           EMYHASL+LQLRQAYEMEQDKELL+LPPD RGGPLEKRYNRLRNVR+LLESSLLKLDDAL
Sbjct: 457 EMYHASLNLQLRQAYEMEQDKELLSLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDAL 516

Query: 421 MLFHDF 426
           MLFHDF
Sbjct: 517 MLFHDF 520

[Close]

BLAST of Sed0027520 vs. ExPASy Swiss-Prot
Match: Q2TBL4 (DNA-directed RNA polymerase III subunit RPC3 OS=Bos taurus OX=9913 GN=POLR3C PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 4.3e-13
Identity = 98/403 (24.32%), Postives = 179/403 (44.42%), Query Frame = 0


Query: 1   MRFPKFLAIAWEKLDKDKDCVELLEGLLQNGRLSMEQII----ERAKSSKQAGNRPIPDV 60
           +R+P+++  A + L  D   + ++E LL NG+++M  ++    +R   + + G       
Sbjct: 86  LRYPRYIYTA-KTLYSDTGEL-IVEELLLNGKMTMSAVVKKVADRLTETMEDGKTMDYAE 145

Query: 61  AHESLFKLLTAHFVERCPAPVPTLSPQVEEQPPRKRGAKAAKVSEVPATLEQRVIEASRP 120
              +  +L+  HFV+RCP    T +      PP    A    VSE    L  ++    + 
Sbjct: 146 VSNTFVRLVDTHFVQRCPLVPATENSDTGPPPP----APTLVVSEKDMYLVPKLSLIGKG 205

Query: 121 MEVKRFSIGETNTEAEKSGRCSPISGQKRKRDDLEMIQESTDADGVILWRANFDEFIRCL 180
              +R S  E  T   K+ R       K+  D+ E I +    DG I W+AN D F +  
Sbjct: 206 K--RRRSSDEDATGEPKAKR------PKQTTDNKEPIPD----DG-IYWQANLDRFHQHF 265

Query: 181 RHKTCIDHVRSQFDDGVVNVLSAILESTRSSEKIVKT--EITAPLSLENIYEEVLKNEVG 240
           R +  +  V ++ D     ++  +L   R SE    +    T PLS   I+  +    VG
Sbjct: 266 RDQAIVSAVANRMDQTSSEIVRTML---RMSEVTTPSGAPFTQPLSSNEIFRSL---PVG 325

Query: 241 RSINLDRVEASLSAL-----------GCSGMEDYEINLQKIIEQAQIDEVESVVLKKYGR 300
            +I+   ++  L+ L           G SG   Y INL K +       +ESVV +++G 
Sbjct: 326 YNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYVINLHKALGSLATATLESVVQERFGS 385

Query: 301 DAYRMFRFLSKTGDLVETERISDKSFVDKNEAPKILYRLWKDEYLYMEKVAIT---VPKH 360
              R+FR + +   L E +++ D + +   EA  +LY++  + ++ ++++  T    P  
Sbjct: 386 RCARIFRLVLQKKHL-EQKQVEDFAMIPAKEAKDMLYKMLSENFISLQEIPKTPDHAPSR 445

Query: 361 TICLLWRVDRYNLWEHVQDEMYHASLSLQLRQAYEMEQDKELL 384
           T   L+ V+  +    +    Y +  +L  R+ +E +++K LL
Sbjct: 446 TF-YLYTVNILSAARMLLHRCYKSVANLIERRQFETKENKRLL 461

[Close]

BLAST of Sed0027520 vs. ExPASy Swiss-Prot
Match: Q9BUI4 (DNA-directed RNA polymerase III subunit RPC3 OS=Homo sapiens OX=9606 GN=POLR3C PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.3e-12
Identity = 88/382 (23.04%), Postives = 162/382 (42.41%), Query Frame = 0


Query: 23  LLEGLLQNGRLSMEQII----ERAKSSKQAGNRPIPDVAHESLFKLLTAHFVERCPAPVP 82
           ++E LL NG+L+M  ++    +R   + + G          +  +L   HFV+RCP+ VP
Sbjct: 106 IVEELLLNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-VP 165

Query: 83  TLSPQVEEQPPRKRGAKAAKVSEVPATLEQRVIEASRPMEVKRFSIGETNTEAEKSGRCS 142
           T        PP    A    ++E    L  ++    +         G+    +++     
Sbjct: 166 TTENSDPGPPP---PAPTLVINEKDMYLVPKLSLIGK---------GKRRRSSDEDAAGE 225

Query: 143 PISGQKRKRDDLEMIQESTDADGVILWRANFDEFIRCLRHKTCIDHVRSQFD---DGVVN 202
           P    K KR       +    D  I W+AN D F +  R +  +  V ++ D     +V 
Sbjct: 226 P----KAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVR 285

Query: 203 VLSAILESTRSSEKIVKTEITAPLSLENIYEEVLKNEVGRSINLDRVEASLSAL------ 262
            +  + E T SS        T PLS   I+  +    VG +I+   ++  L+ L      
Sbjct: 286 TMLRMSEITTSS----SAPFTQPLSSNEIFRSL---PVGYNISKQVLDQYLTLLADDPLE 345

Query: 263 -----GCSGMEDYEINLQKIIEQAQIDEVESVVLKKYGRDAYRMFRFLSKTGDLVETERI 322
                G SG   Y INL K +       +ESVV +++G    R+FR + +    +E +++
Sbjct: 346 FVGKSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQKKH-IEQKQV 405

Query: 323 SDKSFVDKNEAPKILYRLWKDEYLYMEKVAIT---VPKHTICLLWRVDRYNLWEHVQDEM 382
            D + +   EA  +LY++  + ++ ++++  T    P  T   L+ V+  +    +    
Sbjct: 406 EDFAMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTF-YLYTVNILSAARMLLHRC 461

Query: 383 YHASLSLQLRQAYEMEQDKELL 384
           Y +  +L  R+ +E +++K LL
Sbjct: 466 YKSIANLIERRQFETKENKRLL 461

[Close]

BLAST of Sed0027520 vs. ExPASy Swiss-Prot
Match: Q5XIL3 (DNA-directed RNA polymerase III subunit RPC3 OS=Rattus norvegicus OX=10116 GN=Polr3c PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 6.2e-12
Identity = 87/384 (22.66%), Postives = 163/384 (42.45%), Query Frame = 0


Query: 23  LLEGLLQNGRLSMEQII----ERAKSSKQAGNRPIPDVAHESLFKLLTAHFVERCPAPVP 82
           ++E LL NG+++M  ++    +R   + + G          +  +L   HFV+RCP    
Sbjct: 106 IVEELLLNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNAFVRLADTHFVQRCP---- 165

Query: 83  TLSPQVEEQPPRKRGAKAAKVSEVPATLEQRVIEASRPMEVKRFSI---GETNTEAEKSG 142
            L P  +   P             P      VI       V + S+   G+    +++  
Sbjct: 166 -LVPDTDSSDPGP-----------PPPAPNLVINEKDMYLVPKLSLIGKGKRRRSSDEDA 225

Query: 143 RCSPISGQKRKRDDLEMIQESTDADGVILWRANFDEFIRCLRHKTCIDHVRSQFDDGVVN 202
              P + + R  D+    +E T  DG I W+ N D F +  R +  +  V ++ D     
Sbjct: 226 AGEPKAKKPRCTDN----EEPTPDDG-IYWQVNLDRFHQHFRDQAIVSAVANRMDQTSSE 285

Query: 203 VLSAILESTRSSEKIVKT--EITAPLSLENIYEEVLKNEVGRSINLDRVEASLSAL---- 262
           ++  +L   R SE    +    T PLS   I+  +    VG +I+   ++  L+ L    
Sbjct: 286 IVRTML---RMSEITTPSGAPFTQPLSSNEIFRSL---PVGYNISKQVLDQYLTLLADDP 345

Query: 263 -------GCSGMEDYEINLQKIIEQAQIDEVESVVLKKYGRDAYRMFRFLSKTGDLVETE 322
                  G SG   Y INL K +       +ESV+ +++G    R+FR + +   L E +
Sbjct: 346 LEFIGKAGDSGGGMYVINLHKALASLSTATLESVIQERFGSRCARIFRLVLQKKHL-EQK 405

Query: 323 RISDKSFVDKNEAPKILYRLWKDEYLYMEKVAIT---VPKHTICLLWRVDRYNLWEHVQD 382
           ++ D + +   EA  +LY++  + ++ ++++  T    P  T   L+ V+  +    +  
Sbjct: 406 QVEDFAMIPAKEAKDMLYKMLSENFISLQEIPKTPDHAPSRTF-YLYTVNVLSAARMLLH 460

Query: 383 EMYHASLSLQLRQAYEMEQDKELL 384
             Y +  +L  R+ +E +++K LL
Sbjct: 466 RCYKSIANLIERRQFETKENKRLL 460

[Close]

BLAST of Sed0027520 vs. ExPASy Swiss-Prot
Match: Q9D483 (DNA-directed RNA polymerase III subunit RPC3 OS=Mus musculus OX=10090 GN=Polr3c PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.2e-10
Identity = 81/379 (21.37%), Postives = 162/379 (42.74%), Query Frame = 0


Query: 23  LLEGLLQNGRLSMEQII----ERAKSSKQAGNRPIPDVAHESLFKLLTAHFVERCPAPVP 82
           ++E LL NG+++M  ++    +R   + + G          +  +L   HFV+RCP    
Sbjct: 106 IVEELLLNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNAFVRLADTHFVQRCPLVPD 165

Query: 83  TLSPQVEEQPPRKRGAKAAKVSEVPATLEQRVIEASRPMEVKRFSIGETNTEAEKSGRCS 142
           T S      PP    A    ++E    L  ++    +         G+    +++     
Sbjct: 166 TDSSDRGPPPP----APTLVINEKDMYLVPKLSLIGK---------GKRRRSSDEDATGE 225

Query: 143 PISGQKRKRDDLEMIQESTDADGVILWRANFDEFIRCLRHKTCIDHVRSQFDDGVVNVLS 202
           P + + R  D+    +E +  DG I W+ N D F +  R +  +  V ++ D     ++ 
Sbjct: 226 PKAKKPRYTDN----KEPSPDDG-IYWQVNLDRFHQHFRDQAIVSAVANRMDQTSSEIVR 285

Query: 203 AILESTRSSEKIVKTEITAPLSLENIYEEVLKNEVGRSINLDRVEASLSAL--------- 262
            +L  +  +        T PLS   I+  +    VG +I+   ++  L+ L         
Sbjct: 286 TMLRMSEITTP-SSAPYTQPLSSNEIFRSL---PVGYNISKQVLDQYLTLLADDPLEFIG 345

Query: 263 --GCSGMEDYEINLQKIIEQAQIDEVESVVLKKYGRDAYRMFRFLSKTGDLVETERISDK 322
             G SG   + INL K +       +ESV+ +++G    R+FR + +   L E +++ D 
Sbjct: 346 KSGDSGGGMFVINLHKALASLATATLESVIQERFGSRCARIFRLVLQKKHL-EQKQVEDF 405

Query: 323 SFVDKNEAPKILYRLWKDEYLYMEKVAIT---VPKHTICLLWRVDRYNLWEHVQDEMYHA 382
           + +   EA  +LY++  + ++ ++++  T    P  T   L+ V+  +    +    Y +
Sbjct: 406 AMIPAKEAKDMLYKMLSENFILLQEIPKTPDHAPSRTF-YLYTVNVLSAARMLLHRCYKS 460

Query: 383 SLSLQLRQAYEMEQDKELL 384
             +L  R+ +E +++K LL
Sbjct: 466 IANLIERRQFETKENKRLL 460

[Close]

BLAST of Sed0027520 vs. ExPASy Swiss-Prot
Match: Q55FJ5 (DNA-directed RNA polymerase III subunit rpc3 OS=Dictyostelium discoideum OX=44689 GN=polr3c PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.6e-07
Identity = 63/326 (19.33%), Postives = 146/326 (44.79%), Query Frame = 0


Query: 125 GETNTEAEKSGRCSPISGQKRKRDDLEMIQESTDADGVILWRANFDEFIRCLRHKTCIDH 184
           G+   +  K  + S  +    ++    M Q+    +  +LW  N+++FI   + K C D 
Sbjct: 342 GQHTLKKSKLDQSSSTTTTSSRQQQNGMDQQRIIDESRVLWTINYEQFIIEFKLKACYDF 401

Query: 185 VRSQFDDGVVNVLSAILESTRSSEKIVKTEITAPLSLENIYEEVLKN-EVGRSINLDRVE 244
           V  + +     + +A+++  + S +  +  +T+ +  ENI EE  ++ +  + ++  ++E
Sbjct: 402 VTEKNNQQSGLLFNAMVKLCKRSIRSNQDSLTSCVYGENILEEYNRDLDSSKKMDKLQIE 461

Query: 245 ASLSAL------------------GCSGMEDYEINLQKIIEQAQIDEVESVVLKKYGRDA 304
             LS +                    S +  Y++N+  II   +   VES++ +K+G + 
Sbjct: 462 KYLSIMQASRPSMVTKMVSKSKQSSSSELGAYQVNVGNIIGIIKQKMVESIIKQKFGDNG 521

Query: 305 YRMFRFLSKTGDLVETERISDKSFVDKNEAPKILYRLWKDEYLYMEKVAITVP--KHTIC 364
            R+F+ L    +L+E ++I++ + +  NE   +L+ + +   + ++++  +     +   
Sbjct: 522 LRVFKLL-LIKNLLEPKQIAELAMIPPNECKALLFNMMQKNIIRLQEIPRSSDHFANRTF 581

Query: 365 LLWRVDRYNLWEHVQDEMYHASLSLQLRQAYEMEQDKE----LLNLPPDNRGGPLEKRYN 424
            L+ VD   +     ++++ A  + + R   E+E  K+    L  L  D       K Y 
Sbjct: 582 YLFFVDLPTIIATFTEDIFKAIYNTRERLKSELEPHKDALEKLTQLDEDQITEDQAKIYK 641

Query: 425 RLRNVRLLLESSLLKLDDALMLFHDF 426
           +   +   L + +L LD+ L+  + F
Sbjct: 642 KTDRITQTLLTVILNLDNDLLHLYSF 666

[Close]

BLAST of Sed0027520 vs. ExPASy TrEMBL
Match: A0A6J1G256 (DNA-directed RNA polymerase III subunit RPC3 OS=Cucurbita moschata OX=3662 GN=LOC111449973 PE=3 SV=1)

HSP 1 Score: 743.0 bits (1917), Expect = 6.7e-211
Identity = 376/426 (88.26%), Postives = 401/426 (94.13%), Query Frame = 0


Query: 1   MRFPKFLAIAWEKLDKDKDCVELLEGLLQNGRLSMEQIIERAKSSKQAGNRPIPDVAHES 60
           MRF KFLAIA EKL+KDKDC ELLEGLLQNGRLSMEQIIERAKSSK AGNRPIPDV +ES
Sbjct: 97  MRFSKFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNES 156

Query: 61  LFKLLTAHFVERCPAPVPTLSPQVEEQ-PPRKRGAKAAKVSEVPATLEQRVIEASRPMEV 120
           L KLL AHFVERCPAP PTLSPQVEEQ PPRKRGAKAAKVSEVP TLEQR++E++RPMEV
Sbjct: 157 LLKLLNAHFVERCPAPEPTLSPQVEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEV 216

Query: 121 KRFSIGETNTEAEKSGRCSPISGQKRKRDDLEMIQESTDADGVILWRANFDEFIRCLRHK 180
            RFSIGETNTEAE+S   S ISGQKRKR DL+MIQES DADG+ILWRANFDEF+RCLRHK
Sbjct: 217 IRFSIGETNTEAEESEHYSSISGQKRKRGDLDMIQESGDADGIILWRANFDEFVRCLRHK 276

Query: 181 TCIDHVRSQFDDGVVNVLSAILESTRSSEKIVKTEITAPLSLENIYEEVLKNEVGRSINL 240
            CI+HVRSQFDDG VNVLSAILE+TRSSEKIVKTEIT PLSL+NIYEEV+KNEVGRS+ L
Sbjct: 277 ACIEHVRSQFDDGAVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTL 336

Query: 241 DRVEASLSALGCSGMEDYEINLQKIIEQAQIDEVESVVLKKYGRDAYRMFRFLSKTGDLV 300
           DRVEASLSALGCSGMEDY+INLQKIIEQAQIDEVES+VLK+YGRDAYRMFRFLSKTG LV
Sbjct: 337 DRVEASLSALGCSGMEDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLV 396

Query: 301 ETERISDKSFVDKNEAPKILYRLWKDEYLYMEKVAITVPKHTICLLWRVDRYNLWEHVQD 360
           ETE+ISD +FVDKNEAPKILYRLWKDEYLYMEKVAITVP+H++CLLWRVDRYNLWEHV D
Sbjct: 397 ETEKISDSAFVDKNEAPKILYRLWKDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLD 456

Query: 361 EMYHASLSLQLRQAYEMEQDKELLNLPPDNRGGPLEKRYNRLRNVRLLLESSLLKLDDAL 420
           EMYHASL+LQLRQAYEMEQDKELLNLPPD RGGPLEKRYNRLRNVR+LLESSLLKLDDAL
Sbjct: 457 EMYHASLNLQLRQAYEMEQDKELLNLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDAL 516

Query: 421 MLFHDF 426
           MLFHDF
Sbjct: 517 MLFHDF 522

[Close]

BLAST of Sed0027520 vs. ExPASy TrEMBL
Match: A0A6J1HUV1 (DNA-directed RNA polymerase III subunit RPC3 OS=Cucurbita maxima OX=3661 GN=LOC111467684 PE=3 SV=1)

HSP 1 Score: 742.3 bits (1915), Expect = 1.2e-210
Identity = 377/426 (88.50%), Postives = 401/426 (94.13%), Query Frame = 0


Query: 1   MRFPKFLAIAWEKLDKDKDCVELLEGLLQNGRLSMEQIIERAKSSKQAGNRPIPDVAHES 60
           MRF KFLAIA EKL+KDKDC ELLEGLLQNGRLSMEQIIERAKSSK AGNRPIPDV +ES
Sbjct: 97  MRFSKFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQIIERAKSSKHAGNRPIPDVVNES 156

Query: 61  LFKLLTAHFVERCPAPVPTLSPQVEEQ-PPRKRGAKAAKVSEVPATLEQRVIEASRPMEV 120
           L KLL AHFVERCPAP PTLSPQVEEQ PPRKRGAKAAKVSEVP TLEQR++E++RPMEV
Sbjct: 157 LLKLLNAHFVERCPAPEPTLSPQVEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEV 216

Query: 121 KRFSIGETNTEAEKSGRCSPISGQKRKRDDLEMIQESTDADGVILWRANFDEFIRCLRHK 180
            RFSIGETNTEAE+S   S ISGQKRKR DL+MIQES DADG+ILWRANFDEFIRCLRHK
Sbjct: 217 IRFSIGETNTEAEESEHYSSISGQKRKRGDLDMIQESGDADGIILWRANFDEFIRCLRHK 276

Query: 181 TCIDHVRSQFDDGVVNVLSAILESTRSSEKIVKTEITAPLSLENIYEEVLKNEVGRSINL 240
            CI+HVRSQFDDG VNVLSAILE+TRSSEKIVKTEIT PLSLENIYEEV+KNEVGRS+ L
Sbjct: 277 ACIEHVRSQFDDGAVNVLSAILEATRSSEKIVKTEITVPLSLENIYEEVMKNEVGRSMTL 336

Query: 241 DRVEASLSALGCSGMEDYEINLQKIIEQAQIDEVESVVLKKYGRDAYRMFRFLSKTGDLV 300
           DRVEASLSALGCSGMEDY+INLQKIIEQAQIDEVES+VLK+YGRDAYRMFRFLSKTG LV
Sbjct: 337 DRVEASLSALGCSGMEDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLV 396

Query: 301 ETERISDKSFVDKNEAPKILYRLWKDEYLYMEKVAITVPKHTICLLWRVDRYNLWEHVQD 360
           ETE+ISD +FVDKNEAPKILYRLWKDEYLYMEKVAITVP++++CLLWRVDRYNLWEHV D
Sbjct: 397 ETEKISDSAFVDKNEAPKILYRLWKDEYLYMEKVAITVPRYSLCLLWRVDRYNLWEHVLD 456

Query: 361 EMYHASLSLQLRQAYEMEQDKELLNLPPDNRGGPLEKRYNRLRNVRLLLESSLLKLDDAL 420
           EMYHASL+LQLRQAYEMEQDKELLNLPPD RGGPLEKRYNRLRNVR+LLESSLLKLDDAL
Sbjct: 457 EMYHASLNLQLRQAYEMEQDKELLNLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDAL 516

Query: 421 MLFHDF 426
           MLFHDF
Sbjct: 517 MLFHDF 522

[Close]

BLAST of Sed0027520 vs. ExPASy TrEMBL
Match: A0A6J1CHB3 (DNA-directed RNA polymerase III subunit RPC3 OS=Momordica charantia OX=3673 GN=LOC111011656 PE=3 SV=1)

HSP 1 Score: 716.5 bits (1848), Expect = 6.8e-203
Identity = 360/426 (84.51%), Postives = 395/426 (92.72%), Query Frame = 0


Query: 1   MRFPKFLAIAWEKLDKDKDCVELLEGLLQNGRLSMEQIIERAKSSKQAGNRPIPDVAHES 60
           MRF KFLA+A EKL+KDK+C ELLEGLLQNGRLSMEQ++ERAKSSK AGNRPIPDV HES
Sbjct: 97  MRFSKFLAVASEKLEKDKNCEELLEGLLQNGRLSMEQLVERAKSSKHAGNRPIPDVVHES 156

Query: 61  LFKLLTAHFVERCPAPVPTLSPQVEEQ-PPRKRGAKAAKVSEVPATLEQRVIEASRPMEV 120
           LFKLLTAHFVERCPAP P LS QVEEQ PP+KRGAKAAK+SEVP TLEQR++  +RPMEV
Sbjct: 157 LFKLLTAHFVERCPAPEPILSAQVEEQPPPKKRGAKAAKISEVPETLEQRLVGVARPMEV 216

Query: 121 KRFSIGETNTEAEKSGRCSPISGQKRKRDDLEMIQESTDADGVILWRANFDEFIRCLRHK 180
            RFS+ ETNTEAEKS    PISGQKRK D+LE +QES DADG+ILWRANFDEFIRCLRHK
Sbjct: 217 LRFSMSETNTEAEKSE--LPISGQKRKHDELEAVQESGDADGIILWRANFDEFIRCLRHK 276

Query: 181 TCIDHVRSQFDDGVVNVLSAILESTRSSEKIVKTEITAPLSLENIYEEVLKNEVGRSINL 240
            CI+HVRSQFDDGVVNVLSAILE+TRSSEK VKTEIT PLSL+NIYEEV+KNEVGRS+ L
Sbjct: 277 ACIEHVRSQFDDGVVNVLSAILEATRSSEKTVKTEITVPLSLDNIYEEVMKNEVGRSMTL 336

Query: 241 DRVEASLSALGCSGMEDYEINLQKIIEQAQIDEVESVVLKKYGRDAYRMFRFLSKTGDLV 300
           DRVEASLSALGC GM+DY+INL+KIIEQAQI+EVES+VLK+YGRDAYRMFRFLS+TG LV
Sbjct: 337 DRVEASLSALGCPGMDDYKINLRKIIEQAQIEEVESIVLKRYGRDAYRMFRFLSRTGGLV 396

Query: 301 ETERISDKSFVDKNEAPKILYRLWKDEYLYMEKVAITVPKHTICLLWRVDRYNLWEHVQD 360
           ETE+ISD SFVDKNEAPKILYRLWKDEYLYMEKVA+T P+H++CLLWRVD+YNLWEHV D
Sbjct: 397 ETEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVALTGPRHSLCLLWRVDKYNLWEHVLD 456

Query: 361 EMYHASLSLQLRQAYEMEQDKELLNLPPDNRGGPLEKRYNRLRNVRLLLESSLLKLDDAL 420
           EMYHASL+LQLRQAYEMEQDKELL+LPPD RGGPLEKRYNRLRNVR+LLESSLLKLDDAL
Sbjct: 457 EMYHASLNLQLRQAYEMEQDKELLSLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDAL 516

Query: 421 MLFHDF 426
           MLFHDF
Sbjct: 517 MLFHDF 520

[Close]

BLAST of Sed0027520 vs. ExPASy TrEMBL
Match: A0A0A0LBF3 (DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis sativus OX=3659 GN=Csa_3G182170 PE=3 SV=1)

HSP 1 Score: 676.4 bits (1744), Expect = 7.8e-191
Identity = 338/425 (79.53%), Postives = 383/425 (90.12%), Query Frame = 0


Query: 1   MRFPKFLAIAWEKLDKDKDCVELLEGLLQNGRLSMEQIIERAKSSKQAGNRPIPDVAHES 60
           MRF KF+AIA +KL +DK+C ELLEGLLQNGRLSMEQ++ERA+SS +AGN PI DV H+S
Sbjct: 97  MRFSKFVAIASQKLGQDKNCQELLEGLLQNGRLSMEQLVERAESSGRAGNHPISDVVHDS 156

Query: 61  LFKLLTAHFVERCPAPVPTLSPQVEEQPPRKRGAKAAKVSEVPATLEQRVIEASRPMEVK 120
           LFKLL AHFVERCPAP PTLSP+VEE PPRKRGAKAAK+SEVP TLEQR+IEA+RP+EV 
Sbjct: 157 LFKLLNAHFVERCPAPEPTLSPKVEEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVL 216

Query: 121 RFSIGETNTEAEKSGRCSPISGQKRKRDDLEMIQESTDADGVILWRANFDEFIRCLRHKT 180
           RFS+G+TN EAEKS   S ISGQKRK DDLE+ Q+S DADG ILWRAN+DEFIRCLRHK 
Sbjct: 217 RFSMGDTNPEAEKSEHHSQISGQKRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKA 276

Query: 181 CIDHVRSQFDDGVVNVLSAILESTRSSEKIVKTEITAPLSLENIYEEVLKNEVGRSINLD 240
           CI+HVRSQFDDGVVNVLSAILE+TRSSEKIVKTEIT PLSL+NIYEEV+KNEVGRS+ LD
Sbjct: 277 CIEHVRSQFDDGVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLD 336

Query: 241 RVEASLSALGCSGMEDYEINLQKIIEQAQIDEVESVVLKKYGRDAYRMFRFLSKTGDLVE 300
           RVEASL+ALGC GM+DY+INL++IIEQAQ DEVES+VLK+YGRDAYRMFRFLSKTG LVE
Sbjct: 337 RVEASLAALGCPGMDDYKINLRRIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVE 396

Query: 301 TERISDKSFVDKNEAPKILYRLWKDEYLYMEKVAITVPKHTICLLWRVDRYNLWEHVQDE 360
           TE+ISD SFVDKNEAPKILYRLWKDEYLYMEKVA+TVP+H++CLLWRVDRYNLWEHV DE
Sbjct: 397 TEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDE 456

Query: 361 MYHASLSLQLRQAYEMEQDKELLNLPPDNRGGPLEKRYNRLRNVRLLLESSLLKLDDALM 420
           MYHASL+LQLR A+E+E++KELL+LP DN   PL K+ +   NVR LL SSL+KLDDALM
Sbjct: 457 MYHASLNLQLRLAHEIEENKELLSLPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALM 516

Query: 421 LFHDF 426
           LFHDF
Sbjct: 517 LFHDF 521

[Close]

BLAST of Sed0027520 vs. ExPASy TrEMBL
Match: A0A1S3AYY3 (DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis melo OX=3656 GN=LOC103484083 PE=3 SV=1)

HSP 1 Score: 670.6 bits (1729), Expect = 4.3e-189
Identity = 336/426 (78.87%), Postives = 382/426 (89.67%), Query Frame = 0


Query: 1   MRFPKFLAIAWEKLDKDKDCVELLEGLLQNGRLSMEQIIERAKSSKQAGNRPIPDVAHES 60
           MRF KFLAIA +KL +DK+C ELLEGLLQNGRLSMEQ++ERA+SS +AGNRPIPDV H+S
Sbjct: 97  MRFSKFLAIASQKLGQDKNCQELLEGLLQNGRLSMEQMVERAESSGRAGNRPIPDVVHDS 156

Query: 61  LFKLLTAHFVERCPAPVPTLSPQVEEQ-PPRKRGAKAAKVSEVPATLEQRVIEASRPMEV 120
           LFKLL AHFVERCPAP PTLSP+VEEQ PPRKRGAKAAK+ EVP TLEQR+IEA+RP+EV
Sbjct: 157 LFKLLNAHFVERCPAPEPTLSPKVEEQPPPRKRGAKAAKIFEVPETLEQRLIEAARPVEV 216

Query: 121 KRFSIGETNTEAEKSGRCSPISGQKRKRDDLEMIQESTDADGVILWRANFDEFIRCLRHK 180
            RFS+G+TN EAEKS   S ISGQKRK D+LE+ Q+S  ADG ILWRAN+DEFIRCLRHK
Sbjct: 217 LRFSMGDTNPEAEKSEHYSQISGQKRKHDELEIAQDSGHADGAILWRANYDEFIRCLRHK 276

Query: 181 TCIDHVRSQFDDGVVNVLSAILESTRSSEKIVKTEITAPLSLENIYEEVLKNEVGRSINL 240
            C++HVRSQFDDGVVNVLSA LE+TRSSEKIVKTEIT PLSL+NIYEEV+KNEVGRS+ L
Sbjct: 277 ACVEHVRSQFDDGVVNVLSAFLEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTL 336

Query: 241 DRVEASLSALGCSGMEDYEINLQKIIEQAQIDEVESVVLKKYGRDAYRMFRFLSKTGDLV 300
           DRVEASL+ALGC GM+DY+INL++I+EQAQ DEVES+VLK+YGRDAYRMFRFLSKTG LV
Sbjct: 337 DRVEASLAALGCPGMDDYKINLRRIVEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLV 396

Query: 301 ETERISDKSFVDKNEAPKILYRLWKDEYLYMEKVAITVPKHTICLLWRVDRYNLWEHVQD 360
           ETE+ISD SFVDKNEAPKILYRLWKDEYLYMEKVAITVP+H++CLLWRVDRYNLWEHV D
Sbjct: 397 ETEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLD 456

Query: 361 EMYHASLSLQLRQAYEMEQDKELLNLPPDNRGGPLEKRYNRLRNVRLLLESSLLKLDDAL 420
           EMYHASL+LQLR A+E+E++KELL+LP DN   PL K+ +    VR LL SSL+KLDDAL
Sbjct: 457 EMYHASLNLQLRLAHEIEENKELLSLPKDNNNKPLVKKMHHFEKVRNLLRSSLVKLDDAL 516

Query: 421 MLFHDF 426
           MLFHDF
Sbjct: 517 MLFHDF 522

[Close]

BLAST of Sed0027520 vs. TAIR 10
Match: AT3G49000.1 (RNA polymerase III subunit RPC82 family protein )

HSP 1 Score: 344.4 bits (882), Expect = 1.3e-94
Identity = 193/437 (44.16%), Postives = 293/437 (67.05%), Query Frame = 0


Query: 1   MRFPKFLAIAWEKLDKDKDCVELLEGLLQNGRLSMEQIIERAKSSKQAGNRPIPDVAHES 60
           +R+ KF  I  E+L  D  C  +L+GLL NGRL++ Q IER + S   GN    +   +S
Sbjct: 97  VRYNKFSRIVNEEL--DSKCGAVLDGLLSNGRLTLGQFIERDRDS---GNTIGSEAIRDS 156

Query: 61  LFKLLTAHFVERCPAPVPTLSPQVEEQPPRKRGAKAAKVSEVPATLEQRVIEASRPMEVK 120
           L KL+ A FVER P+P P L  + E++P ++RGAKAAK+ + P TLE++V+EA+ P++  
Sbjct: 157 LQKLVAARFVERIPSPEPVLGNK-EKEPAKRRGAKAAKILKEPETLEEQVVEAATPVDAI 216

Query: 121 RFS-IGETNTEAEKSGRCSPISGQKRKRDDLEMIQESTDADGVILWRANFDEFIRCLRHK 180
           RF  I E ++ +  +   S I+  KRK+ D+    +++D+   ++WR NF+EFI  LRHK
Sbjct: 217 RFPLIFEEDSNSSLADDNSNITEGKRKQRDV----DTSDSSSGVIWRPNFEEFIHRLRHK 276

Query: 181 TCIDHVRSQFDDGVVNVLSAILESTRSSEKIVKTEITAPLSLENIYEEVLKNEVGRSINL 240
            C++ V+ + D+G   VL A+LE  RS EK VKT+ +AP+S+ +IYEEV+K E GR++  
Sbjct: 277 ACVEIVKERRDEGCAIVLRAMLEVGRSQEKKVKTDNSAPMSVGSIYEEVIKTEAGRTMLQ 336

Query: 241 DRVEASLSALGCSGM----------EDYEINLQKIIEQAQIDEVESVVLKKYGRDAYRMF 300
           +RVEA L  L  +            + Y ++ + II  AQ DE+E+VV+++YG++A+RMF
Sbjct: 337 ERVEACLDQLSATSSYLPAFVNEVNDSYIVDYKSIISVAQKDEIEAVVMRRYGKEAFRMF 396

Query: 301 RFLSKTGDLVETERISDKSFVDKNEAPKILYRLWKDEYLYMEKVAITVP-KHTICLLWRV 360
           R+LS+ G  VET++I+D +  +K + P+ L ++WKD YL+M+K+A+T P  +T  LLW+V
Sbjct: 397 RYLSQEGRFVETDKIADAALTEKKDTPQFLLKMWKDGYLHMQKLAVTAPGMYTPFLLWKV 456

Query: 361 DRYNLWEHVQDEMYHASLSLQLRQAYEMEQDKELLNLPPDNRGGPLEKRYNRLRNVRLLL 420
           ++  +   + DEMYHASL+L LR A+E+E +KELL LP D   GPL++R  +++  RLLL
Sbjct: 457 NKLIVTTQMLDEMYHASLNLSLRLAHELEAEKELLLLPLDKLEGPLKERLKKVKAKRLLL 516

Query: 421 ESSLLKLDDALMLFHDF 426
            S++ KLDDA+MLFHDF
Sbjct: 517 SSTMFKLDDAIMLFHDF 523

The following BLAST results are available for this feature:

BLAST of Sed0027520 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022945853.1	1.4e-210	88.26	DNA-directed RNA polymerase III subunit RPC3 [Cucurbita moschata]	[more]
XP_022968436.1	2.4e-210	88.50	DNA-directed RNA polymerase III subunit RPC3 [Cucurbita maxima]	[more]
KAG6574180.1	5.3e-210	88.26	DNA-directed RNA polymerase III subunit RPC3, partial [Cucurbita argyrosperma su...	[more]
XP_023541704.1	6.9e-210	88.03	DNA-directed RNA polymerase III subunit RPC3 [Cucurbita pepo subsp. pepo]	[more]
XP_022141200.1	1.4e-202	84.51	uncharacterized protein LOC111011656 isoform X1 [Momordica charantia]	[more]

BLAST of Sed0027520 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2TBL4	4.3e-13	24.32	DNA-directed RNA polymerase III subunit RPC3 OS=Bos taurus OX=9913 GN=POLR3C PE=...	[more]
Q9BUI4	1.3e-12	23.04	DNA-directed RNA polymerase III subunit RPC3 OS=Homo sapiens OX=9606 GN=POLR3C P...	[more]
Q5XIL3	6.2e-12	22.66	DNA-directed RNA polymerase III subunit RPC3 OS=Rattus norvegicus OX=10116 GN=Po...	[more]
Q9D483	1.2e-10	21.37	DNA-directed RNA polymerase III subunit RPC3 OS=Mus musculus OX=10090 GN=Polr3c ...	[more]
Q55FJ5	1.6e-07	19.33	DNA-directed RNA polymerase III subunit rpc3 OS=Dictyostelium discoideum OX=4468...	[more]

BLAST of Sed0027520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G256	6.7e-211	88.26	DNA-directed RNA polymerase III subunit RPC3 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1HUV1	1.2e-210	88.50	DNA-directed RNA polymerase III subunit RPC3 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1CHB3	6.8e-203	84.51	DNA-directed RNA polymerase III subunit RPC3 OS=Momordica charantia OX=3673 GN=L...	[more]
A0A0A0LBF3	7.8e-191	79.53	DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis sativus OX=3659 GN=Csa_3...	[more]
A0A1S3AYY3	4.3e-189	78.87	DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]

BLAST of Sed0027520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49000.1	1.3e-94	44.16	RNA polymerase III subunit RPC82 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 220..240
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..114
IPR008806	RNA polymerase III Rpc82, C -terminal	PFAM	PF05645	RNA_pol_Rpc82	coord: 26..202 e-value: 6.3E-15 score: 55.6
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 227..315 e-value: 4.2E-19 score: 70.3
IPR039748	DNA-directed RNA polymerase III subunit RPC3	PANTHER	PTHR12949	RNA POLYMERASE III DNA DIRECTED -RELATED	coord: 1..391

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0027520.1	Sed0027520.1	mRNA
Sed0027520.2	Sed0027520.2	mRNA
Sed0027520.3	Sed0027520.3	mRNA
Sed0027520.4	Sed0027520.4	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003677	DNA binding