Sed0027494 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGCTCAACATTACACCCTAAGCTTACCACAAAAATAGCCTATATTTTGTTGGCCCTGTGGGTTCTAATTATTATGACAATTAAAGGCGGCACGAGCCAAGCCTGCGCCTCGTGCAAGTACCAACGACGCCGGTGCTCGAAAGACTGCGCCTTGGCTCCATTTTTTCCAGCTGATGAGCCCAAGAAGTTTCAAAACGCGCACCGCCTTTTCGGGGTCCGTAACATAATGAACATACTTAAACAAGTCCACCCCTCCAAGAAAGAAGAGACAATGACTTCAATTATCTTCGAGTCGAACATGCGCGATCGAGATCCCGTTTATGGATGTTGTGGCTACATTGTTCAACTTCAATATGAAATAGAAGCAGTGAGGCAACAAATCCATCAAATAAAAATTAGGTTAGCAATGATGAAGGATCAGTCGTTACACAATCAAATGAATCAAATGAACATCACGATGCCGGATGAGATCGTCGCGAATAACGACATTGTTTATCCAAGTTATACACAGCAACAACAACATCTACCATACAATTCGGGGTTTCTTGTAAATCAAGCAACGGATGGAAATGATTTACTATTTGGAAATGTGGGCAACAATGGTGCTATTTTCGATAATGAGTTGAGAATTCAGCAACATTATCATGATAATTTTGGGATTGATTTTAATAACGTTGATTCTATGTTATTGCAATCTAACTTGATGCCGGCAGCTCAAAGTTATCCTTGCCAACATGAAATGGAGATTTCTCATGGTTATGATGAAATTGCATTTGATACGGCCGTAGATGATCGACAATCTTACATTGAATCTAAAGAAACATGCGATTCTAGGTACGTAATTGTTCTTCTCAATTCAGATCTAATTAAATTGATCTTCTTAAATGTTAATGTTGATCTGCTCAAATCTCCCATCTGTGATATCATGTGATGTGATGCCTAGCTTCTAAGAAATAATTTGTTTTCTAGTTAAAGTTTTTTCTAATTACCTCACAATTGCCCACACTTTAATTAGATACCAAATTTTATGCTATTTGAGTTAGCTAGACATCTTTTCTTTTAGTTGGGTAATTTTTGGACTTGATTCCGAACTTGTAACTTCATAATTATTAGGATTATTAAGTCATATCGAATATCTTTTAGATAATTACTTTTAGAGCTAACAACAGCATACTAAGGATTACCTCTAATACAAAAACATAATATGAAGATTATCACTTAGATTAGATCTAATACAAAGCATAATACTAAGATTATTACTAGGCAATAGTCCTTTTAGCAGCTAGTTATAGGCAGCATTTTAAAAATTAGATCTAATTGCAAAACACAATCGACCATCATATTCTAAATATTAGAGCAATACAATTACTTATCCATATTTATGGCCACAAATTAAAGTGCTACCCACAATTTTGTTAAACTCATAAGGAAAAAAAATTGTGACCATCAATGTGGATAGAAAGGACTTAGTCCTTATAAGTACCCAAGTATTGCTCCTAAGGATTTTATAAATTAATTACTTAAAGTAAACCATAACTAATAAGCATTCTCCTTTTGAAGATAGGGATCTATGTTACCTCATCATTTTGGAAGTGTTTCATGAAACACTCCTAAATTTTATCTGATAAAATTCTTCAATAAAGAAAAAAAAAACACAAATAAATAGTTTAGTATAGCTCAACACACTTATGACTTTGAAACATTAAAAAAAATCACATCTAATTGTTTTTGAACTACCAAAACTACTTTTAAACATAGAAGTAAAACATAAAAGTGACATCCTGAAGATTATTTTTACATAAAAGTCAAATAAATTAAATCAATTTTAAAGAACAGAGGTTTGAATAGCCAATTTGTTGTTATTGTTTCTTAGTTGATCTAATTACAAATATTTTGTCTTTTTAGTTTTTTTTTACAATTCATTTTTAGTTCAAAAATATTTAAGGTGAGATTTTGAACTTGTAATCTTGTGGTTGAGATTATTAAGTCATACAAAATACCTTCAAAACTCTACTTGTTTTAGCAAGATCATTCTAAAGATTAGATCTAATAATAAAACATAATCACGAATGATACTCTAAAGATTAGATCTAATAACAAAACATAATCACCGATGATATCCTAAAGTTTATTACTTTTGGAATAGAAGTAAAAATAACAAACAAAATATATATATATATATATATATATATATATATATATATATATTAGAAATTAATTACTTCAAAGCAAAATATAACCAATAAATACGATCTCCTTTTGAAGATATGATCCTATATTTTGTGGAGATCTTATTTTGTGAAAAGTATCCACTCCAGTGTGGCCTCCATCATTTCCATTTTTGAGGAGTGTAATCTATTGGCGTATATAGGAATTGAATTGACCGGGAATTTTTAATTTTTTAGTTTTATGAACACCCTAATTTGATCTAATAAAATTCTACTTTGGAAAATAAGAATGGTTGAGTATAGCTCAACACACTTGACCTTAAACTTCAAAAAAAAAACCATGTCTAATTGCTTTTGGACTAAAAAAAATTCAAACATAAGAGTGACATGATTTTTTTTTTTGGGTTAAAATACCATTTCGGCCTCTTGATTTTGGGGTTTGTTCTATTTTGACCTATCGATTTTCAAATATCCAATTTACGTTCTCAACTTTATTGTTTGTTCAATTATGATCATTAAACTTTGTTATTTGTTTAATTTTGGTCTCATGACCTTCAAATGTCCAAGTTTGGTCTCTAGACTATCAAAACAGTTTTAAAATGATGTTCTTAGTTCAAATAAATTTTTTATCGATCTTAAATTATTTTCTCTCTCTTTCATCTTTTCTCTTTCCTAGAAGTTTTGTTATCTTAAATCCACCTCTCTAGTTTCTTTCCTTCTTTTTCTTTCTCTTATTATCTCTTCGATTCTCTCATCAAATTGTTTAATATAAGACAATTTTCTTAAATAATCATTTTCTTTATTTGATTTGTCACTTTTGTTTTCAAAATTCGTAGGTTACCATGGAACCAAGGAGAAAAAATAAAAGAGAATGAAAGGAGAAAATATAATGAAAAAGGGAAGAAATGTAGATTGAAGAGAGGTAAAACTTCTAAAGAAAGAAAGATGAAGATAGAAAAGAGAGAAAATAATTTAGTTGTAAGAAAAAATTCATTTGACTAAAATGACGATTTTTGAAATTTTTTTATAGTCTAGAGATCAAATTTAGATATTTGAAAGTTGAGGGACCAAAATTGGACAAACAGCAAAGTTGAGGGACCAAAATTGAACATCTGAAAGTTGAGGGACCAAAATTGGACAAACAACAAAGTCGAGGGACCAAAATTAGACTTCTAAAAGTTAAAGGACTAAAATGAATCAAAATGGTATTTTAACTTTTTTTTTTCTTAAGTTAAATAAATTAGGATAAATTTTGAAGAACCGAAGCCTGGTTAGCCAATTTGTTGTTTTTTTTAGTTAATCGAATTAAAAGTTCGAATATTTTTACATAAAAGTCAAGTAAGTTATTGATGAATTTTACAATATAAATTTAGTTTCTATGATTTGAAAAAAAGTTTGTTATTCATGATTTTAAAAATTAAAATTTTGTCTTATGGTTTGAAAAACTATCGAATTTAGTCTTATAATTTTAAAAATTAGAATTTAATTCTTATGATTTGATAAAACCTAATAAATAGTCATTGTTGTTTTTAATTATTGGCGAATTATTAAATATTTGAAAGTTAATTATTTATGTGTCAATATAAAATTACGATATAACAAAAAAATCATATCATTTATGCCTAAATAGTGAATTTCCATGAATTTAATATGCCAGCTATTATGTCCATAATTATGGGGACTAAGCTTAAAATTTTGAAATCATAAAAACTAAATTCTAACTTTGTTCAAACCATTTCATTGACAGTGCGGAATCGAGCTTCAAAGAAGTGTCAGAATCATCAACATATTCAATAACCGATCTCAAAAATGCTGCTGCTTGTTTTAGTCTAACAAGTAAAGAAATAGGACCAAAATAA ATGAGCTCAACATTACACCCTAAGCTTACCACAAAAATAGCCTATATTTTGTTGGCCCTGTGGGTTCTAATTATTATGACAATTAAAGGCGGCACGAGCCAAGCCTGCGCCTCGTGCAAGTACCAACGACGCCGGTGCTCGAAAGACTGCGCCTTGGCTCCATTTTTTCCAGCTGATGAGCCCAAGAAGTTTCAAAACGCGCACCGCCTTTTCGGGGTCCGTAACATAATGAACATACTTAAACAAGTCCACCCCTCCAAGAAAGAAGAGACAATGACTTCAATTATCTTCGAGTCGAACATGCGCGATCGAGATCCCGTTTATGGATGTTGTGGCTACATTGTTCAACTTCAATATGAAATAGAAGCAGTGAGGCAACAAATCCATCAAATAAAAATTAGGTTAGCAATGATGAAGGATCAGTCGTTACACAATCAAATGAATCAAATGAACATCACGATGCCGGATGAGATCGTCGCGAATAACGACATTGTTTATCCAAGTTATACACAGCAACAACAACATCTACCATACAATTCGGGGTTTCTTGTAAATCAAGCAACGGATGGAAATGATTTACTATTTGGAAATGTGGGCAACAATGGTGCTATTTTCGATAATGAGTTGAGAATTCAGCAACATTATCATGATAATTTTGGGATTGATTTTAATAACGTTGATTCTATGTTATTGCAATCTAACTTGATGCCGGCAGCTCAAAGTTATCCTTGCCAACATGAAATGGAGATTTCTCATGGTTATGATGAAATTGCATTTGATACGGCCGTAGATGATCGACAATCTTACATTGAATCTAAAGAAACATGCGATTCTAGTGCGGAATCGAGCTTCAAAGAAGTGTCAGAATCATCAACATATTCAATAACCGATCTCAAAAATGCTGCTGCTTGTTTTAGTCTAACAAGTAAAGAAATAGGACCAAAATAA ATGAGCTCAACATTACACCCTAAGCTTACCACAAAAATAGCCTATATTTTGTTGGCCCTGTGGGTTCTAATTATTATGACAATTAAAGGCGGCACGAGCCAAGCCTGCGCCTCGTGCAAGTACCAACGACGCCGGTGCTCGAAAGACTGCGCCTTGGCTCCATTTTTTCCAGCTGATGAGCCCAAGAAGTTTCAAAACGCGCACCGCCTTTTCGGGGTCCGTAACATAATGAACATACTTAAACAAGTCCACCCCTCCAAGAAAGAAGAGACAATGACTTCAATTATCTTCGAGTCGAACATGCGCGATCGAGATCCCGTTTATGGATGTTGTGGCTACATTGTTCAACTTCAATATGAAATAGAAGCAGTGAGGCAACAAATCCATCAAATAAAAATTAGGTTAGCAATGATGAAGGATCAGTCGTTACACAATCAAATGAATCAAATGAACATCACGATGCCGGATGAGATCGTCGCGAATAACGACATTGTTTATCCAAGTTATACACAGCAACAACAACATCTACCATACAATTCGGGGTTTCTTGTAAATCAAGCAACGGATGGAAATGATTTACTATTTGGAAATGTGGGCAACAATGGTGCTATTTTCGATAATGAGTTGAGAATTCAGCAACATTATCATGATAATTTTGGGATTGATTTTAATAACGTTGATTCTATGTTATTGCAATCTAACTTGATGCCGGCAGCTCAAAGTTATCCTTGCCAACATGAAATGGAGATTTCTCATGGTTATGATGAAATTGCATTTGATACGGCCGTAGATGATCGACAATCTTACATTGAATCTAAAGAAACATGCGATTCTAGTGCGGAATCGAGCTTCAAAGAAGTGTCAGAATCATCAACATATTCAATAACCGATCTCAAAAATGCTGCTGCTTGTTTTAGTCTAACAAGTAAAGAAATAGGACCAAAATAA MSSTLHPKLTTKIAYILLALWVLIIMTIKGGTSQACASCKYQRRRCSKDCALAPFFPADEPKKFQNAHRLFGVRNIMNILKQVHPSKKEETMTSIIFESNMRDRDPVYGCCGYIVQLQYEIEAVRQQIHQIKIRLAMMKDQSLHNQMNQMNITMPDEIVANNDIVYPSYTQQQQHLPYNSGFLVNQATDGNDLLFGNVGNNGAIFDNELRIQQHYHDNFGIDFNNVDSMLLQSNLMPAAQSYPCQHEMEISHGYDEIAFDTAVDDRQSYIESKETCDSSAESSFKEVSESSTYSITDLKNAAACFSLTSKEIGPK Homology
BLAST of Sed0027494 vs. NCBI nr
Match: XP_038889690.1 (LOB domain-containing protein 27 [Benincasa hispida]) HSP 1 Score: 391.3 bits (1004), Expect = 7.6e-105 Identity = 205/296 (69.26%), Postives = 238/296 (80.41%), Query Frame = 0
BLAST of Sed0027494 vs. NCBI nr
Match: KAG7016152.1 (LOB domain-containing protein 27, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 382.9 bits (982), Expect = 2.7e-102 Identity = 210/322 (65.22%), Postives = 245/322 (76.09%), Query Frame = 0
BLAST of Sed0027494 vs. NCBI nr
Match: XP_022939923.1 (LOB domain-containing protein 27-like [Cucurbita moschata]) HSP 1 Score: 378.6 bits (971), Expect = 5.1e-101 Identity = 200/297 (67.34%), Postives = 233/297 (78.45%), Query Frame = 0
BLAST of Sed0027494 vs. NCBI nr
Match: KAG6578600.1 (LOB domain-containing protein 27, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 378.6 bits (971), Expect = 5.1e-101 Identity = 208/322 (64.60%), Postives = 243/322 (75.47%), Query Frame = 0
BLAST of Sed0027494 vs. NCBI nr
Match: KAA0039530.1 (LOB domain-containing protein 27-like [Cucumis melo var. makuwa] >TYK15283.1 LOB domain-containing protein 27-like [Cucumis melo var. makuwa]) HSP 1 Score: 374.0 bits (959), Expect = 1.3e-99 Identity = 208/330 (63.03%), Postives = 249/330 (75.45%), Query Frame = 0
BLAST of Sed0027494 vs. ExPASy Swiss-Prot
Match: Q9STS6 (LOB domain-containing protein 27 OS=Arabidopsis thaliana OX=3702 GN=LBD27 PE=1 SV=1) HSP 1 Score: 151.4 bits (381), Expect = 1.7e-35 Identity = 112/332 (33.73%), Postives = 173/332 (52.11%), Query Frame = 0
BLAST of Sed0027494 vs. ExPASy Swiss-Prot
Match: Q9LRW1 (LOB domain-containing protein 22 OS=Arabidopsis thaliana OX=3702 GN=LBD22 PE=2 SV=1) HSP 1 Score: 126.7 bits (317), Expect = 4.6e-28 Identity = 68/173 (39.31%), Postives = 106/173 (61.27%), Query Frame = 0
BLAST of Sed0027494 vs. ExPASy Swiss-Prot
Match: A1YKY7 (Protein IAL1 OS=Zea mays OX=4577 PE=2 SV=1) HSP 1 Score: 116.3 bits (290), Expect = 6.2e-25 Identity = 46/106 (43.40%), Postives = 71/106 (66.98%), Query Frame = 0
BLAST of Sed0027494 vs. ExPASy Swiss-Prot
Match: Q32SG3 (LOB domain-containing protein 6 OS=Zea mays OX=4577 GN=LBD6 PE=1 SV=1) HSP 1 Score: 114.8 bits (286), Expect = 1.8e-24 Identity = 46/106 (43.40%), Postives = 72/106 (67.92%), Query Frame = 0
BLAST of Sed0027494 vs. ExPASy Swiss-Prot
Match: O04479 (Protein ASYMMETRIC LEAVES 2 OS=Arabidopsis thaliana OX=3702 GN=AS2 PE=1 SV=1) HSP 1 Score: 112.1 bits (279), Expect = 1.2e-23 Identity = 47/110 (42.73%), Postives = 75/110 (68.18%), Query Frame = 0
BLAST of Sed0027494 vs. ExPASy TrEMBL
Match: A0A6J1FMW4 (LOB domain-containing protein 27-like OS=Cucurbita moschata OX=3662 GN=LOC111445645 PE=3 SV=1) HSP 1 Score: 378.6 bits (971), Expect = 2.5e-101 Identity = 200/297 (67.34%), Postives = 233/297 (78.45%), Query Frame = 0
BLAST of Sed0027494 vs. ExPASy TrEMBL
Match: A0A5D3CTR4 (LOB domain-containing protein 27-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00630 PE=3 SV=1) HSP 1 Score: 374.0 bits (959), Expect = 6.1e-100 Identity = 208/330 (63.03%), Postives = 249/330 (75.45%), Query Frame = 0
BLAST of Sed0027494 vs. ExPASy TrEMBL
Match: A0A6J1K2Y1 (LOB domain-containing protein 27-like OS=Cucurbita maxima OX=3661 GN=LOC111489582 PE=3 SV=1) HSP 1 Score: 373.2 bits (957), Expect = 1.0e-99 Identity = 198/298 (66.44%), Postives = 231/298 (77.52%), Query Frame = 0
BLAST of Sed0027494 vs. ExPASy TrEMBL
Match: A0A0A0KXA1 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G633830 PE=3 SV=1) HSP 1 Score: 373.2 bits (957), Expect = 1.0e-99 Identity = 207/334 (61.98%), Postives = 250/334 (74.85%), Query Frame = 0
BLAST of Sed0027494 vs. ExPASy TrEMBL
Match: A0A6J1C1R5 (LOB domain-containing protein 4-like OS=Momordica charantia OX=3673 GN=LOC111006629 PE=3 SV=1) HSP 1 Score: 355.1 bits (910), Expect = 2.9e-94 Identity = 192/295 (65.08%), Postives = 227/295 (76.95%), Query Frame = 0
BLAST of Sed0027494 vs. TAIR 10
Match: AT3G47870.1 (LOB domain-containing protein 27 ) HSP 1 Score: 151.4 bits (381), Expect = 1.2e-36 Identity = 112/332 (33.73%), Postives = 173/332 (52.11%), Query Frame = 0
BLAST of Sed0027494 vs. TAIR 10
Match: AT3G13850.1 (LOB domain-containing protein 22 ) HSP 1 Score: 126.7 bits (317), Expect = 3.3e-29 Identity = 68/173 (39.31%), Postives = 106/173 (61.27%), Query Frame = 0
BLAST of Sed0027494 vs. TAIR 10
Match: AT1G65620.1 (Lateral organ boundaries (LOB) domain family protein ) HSP 1 Score: 112.1 bits (279), Expect = 8.3e-25 Identity = 47/110 (42.73%), Postives = 75/110 (68.18%), Query Frame = 0
BLAST of Sed0027494 vs. TAIR 10
Match: AT1G65620.2 (Lateral organ boundaries (LOB) domain family protein ) HSP 1 Score: 112.1 bits (279), Expect = 8.3e-25 Identity = 47/110 (42.73%), Postives = 75/110 (68.18%), Query Frame = 0
BLAST of Sed0027494 vs. TAIR 10
Match: AT1G65620.3 (Lateral organ boundaries (LOB) domain family protein ) HSP 1 Score: 112.1 bits (279), Expect = 8.3e-25 Identity = 47/110 (42.73%), Postives = 75/110 (68.18%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|