Sed0027483 (gene) Chayote v1

Overview


Name	Sed0027483
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Protein TIC 214
Location	Contig00347: 94484 .. 96591 (-)
RNA-Seq Expression	Sed0027483
Synteny	Sed0027483

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGAAGATAATCAATTCAGTCGTTGTGGTCGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGAGCCCTCTTATCTCTTCCTTCTCTCGAGCTCAGGTTATGGAAGAAGGAACCGAGAAAAAGTATCAGCAACAACAGGTTTTATTGCAGGACAGCTCATGATGTTCATATCGATCTATTATGCGCCTCTGCATCTAGCATTGGTAGACCTCATACAATAACTGTCCTAGCTCTACCGTATCTTTTGTTTCATTTCTTCTGGAACAATCACAAACACTTTTTTGATTATGGATCTACTACCAGAAACTCAATGCGTAATCTTAGCATTCAATGTGTATTCCTGAATAATCTCATTTTTCAATTATTCAACCATTTCATTTTACCAAGTTCAATGTTAGTCAGATTAGTCAACATTTCTATGTTTCGATACAACAACAAGATGTTATTTGTAACAAGTAGTTTTGTTGGTTGGTTAATTGGTCACATTTTATTCATGAAATGGGTTGGATTGATATTAGTCTGGATACAGCAAAATAATTCTATTAGATCTAATGTACTTATTAGATCTAATAAGTACTGTAATGTCAGAATTGAGAAATTCGATGGCTCAGATCTTTAGTATTCTCTTATTTATTACCTGTGTCTACTATTTAGGCAGAATACCGTCACCCATTCTTACTAAGAAACTGAAAGAAACCTCAGAAACGGAGCAAAGGGGGGAAAGCGAGAAAGAAACAGATGTAGAAATAGAAACCACTTCCAGAACAGAGGGGACTAAACAGGAACAGGAACAGGAGGGATCCACCGAAGAAGATACTTCTCCTTCCCTTTTTTCGGAAGAAAAGGAGGATCCGGACAAAATCGATGAAACGGAAGAGATCCGAGTGAATGGAAAGGAAAAAACAAAGGATGAATTCCACTTTAAAAGGACACGCTATCAAAATATAAAAAGACCAGTTTATGAAACTTCTTACCCTCCGGATGGAAATAAAGAAAATTCGAAGTTAGAAATAGATAAAAAAGAAAAATATCTCTTCTGGTTTGAAAAACCTCTTGTGACTATTCTTTTCGACTATAAACGATGGAATCGTCCATTTCGATATATAAAAAATGATAAATTTGAAAATGCGATTAGAACTCAAATGTCACAATATTTTTTTTATACATGTAAAAGTGACGGAAAAGACAGAATCGTTTTTACACATCCACCTAGTGTATCAACTTTTTTTGAAATGATACAAAAAAAGATATCTTTGTTCACAAGAGAAAAACTTTCGTATGATGAATTGGATAATCCGTGGAATTATCTCAATGAACAAAAAAAAATAAATTTAAACAAAAAATTTATAACTAGAATTCAAATTCTGGATAAGGGATCCCTTATTCTAGCTCGGGATGTACTGGAAAAAAGGACTCATTTATGTAATGATAAAACTCAAAAGTACTATTTACCAAAAATATATGATCCTTTGTTGAGCGGCCCTTACCGCAAACGAATCCTTTTTTTTTTTTCATTGAGAATGAAAAAAAAAACTTCTATAAAAAATGATAGTAAGAACGTTTGGACAAATAAGATTCATGCTATCTTTCTTAATATTAATTACCCACAAATTGAGTCAGAAGATCAAATAAAATCGTTAAACTTTTTATTCGATGCAGTTATAACTCCTTACAACGCTAAAGCAAGTCGTCAAAACTCAATTGGACTCAGAGAAATTAATAAAAAAGTTCCTCGATGGTCATACAAAGTAATCAACGAGTTAGAACAACAGGAAGGAGAAAACAAGCAAAAGATAGCATCAGATAATCAAATTCGTTCAAGAAAAGCCAAACGTGTAGTAATTTTGAATGATAATCTAGAAACGAGCGATACTTCTCCTAATACCACAGATACTGATACTCCTGATCAACCAAAGAAAGTTGTTTTGATACGGTATTCCCAACAATCGGATTTTCGTCGAGACATAATAAAAGGCTCTATGCGTGCTCAAAGACGTAAAACAGTTATTTGTAAACTGTTTGAAGCAAATGTACATTCTTATTTTTTTGTTGAGAGACTAGACAAATCTTTATTTTGTTCTTTTTTATTCCCGGAGTAA

mRNA sequence

ATGCATGAAGATAATCAATTCAGTCGTTGTGGTCGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGAGCCCTCTTATCTCTTCCTTCTCTCGAGCTCAGGTTATGGAAGAAGGAACCGAGAAAAAGTATCAGCAACAACAGGTTTTATTGCAGGACAAAACGGAGCAAAGGGGGGAAAGCGAGAAAGAAACAGATGTAGAAATAGAAACCACTTCCAGAACAGAGGGGACTAAACAGGAACAGGAACAGGAGGGATCCACCGAAGAAGATACTTCTCCTTCCCTTTTTTCGGAAGAAAAGGAGGATCCGGACAAAATCGATGAAACGGAAGAGATCCGATTAGAACAACAGGAAGGAGAAAACAAGCAAAAGATAGCATCAGATAATCAAATTCGTTCAAGAAAAGCCAAACGTGTAGTAATTTTGAATGATAATCTAGAAACGAGCGATACTTCTCCTAATACCACAGATACTGATACTCCTGATCAACCAAAGAAAGTTGTTTTGATACGGTATTCCCAACAATCGGATTTTCGTCGAGACATAATAAAAGGCTCTATGCGTGCTCAAAGACGTAAAACAGTTATTTGTAAACTGTTTGAAGCAAATGTACATTCTTATTTTTTTGTTGAGAGACTAGACAAATCTTTATTTTGTTCTTTTTTATTCCCGGAGTAA

Coding sequence (CDS)

ATGCATGAAGATAATCAATTCAGTCGTTGTGGTCGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGAGCCCTCTTATCTCTTCCTTCTCTCGAGCTCAGGTTATGGAAGAAGGAACCGAGAAAAAGTATCAGCAACAACAGGTTTTATTGCAGGACAAAACGGAGCAAAGGGGGGAAAGCGAGAAAGAAACAGATGTAGAAATAGAAACCACTTCCAGAACAGAGGGGACTAAACAGGAACAGGAACAGGAGGGATCCACCGAAGAAGATACTTCTCCTTCCCTTTTTTCGGAAGAAAAGGAGGATCCGGACAAAATCGATGAAACGGAAGAGATCCGATTAGAACAACAGGAAGGAGAAAACAAGCAAAAGATAGCATCAGATAATCAAATTCGTTCAAGAAAAGCCAAACGTGTAGTAATTTTGAATGATAATCTAGAAACGAGCGATACTTCTCCTAATACCACAGATACTGATACTCCTGATCAACCAAAGAAAGTTGTTTTGATACGGTATTCCCAACAATCGGATTTTCGTCGAGACATAATAAAAGGCTCTATGCGTGCTCAAAGACGTAAAACAGTTATTTGTAAACTGTTTGAAGCAAATGTACATTCTTATTTTTTTGTTGAGAGACTAGACAAATCTTTATTTTGTTCTTTTTTATTCCCGGAGTAA

Protein sequence

MHEDNQFSRCGRTLLWISDHILHRSPLISSFSRAQVMEEGTEKKYQQQQVLLQDKTEQRGESEKETDVEIETTSRTEGTKQEQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIRLEQQEGENKQKIASDNQIRSRKAKRVVILNDNLETSDTSPNTTDTDTPDQPKKVVLIRYSQQSDFRRDIIKGSMRAQRRKTVICKLFEANVHSYFFVERLDKSLFCSFLFPE

Homology

[Close]

BLAST of Sed0027483 vs. NCBI nr
Match: QIT04190.1 (Ycf1 protein [Sechium edule])

HSP 1 Score: 210.7 bits (535), Expect = 1.3e-50
Identity = 109/111 (98.20%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 116 LEQQEGENKQKIASDNQIRSRKAKRVVILNDNLETSDTSPNTTDTDTPDQPKKVVLIRYS 175
           LEQQEGENKQKIASDNQIRSRKAKRVVILNDNLETSDTSPNTTDTDTPDQPKKVVLIRYS
Sbjct: 604 LEQQEGENKQKIASDNQIRSRKAKRVVILNDNLETSDTSPNTTDTDTPDQPKKVVLIRYS 663

Query: 176 QQSDFRRDIIKGSMRAQRRKTVICKLFEANVHSYFFVERLDKSLFCSFLFP 227
           QQSDFRRDIIKGSMRAQRRKTVICKLFEANVHSYFFVERLDKSLFCSF  P
Sbjct: 664 QQSDFRRDIIKGSMRAQRRKTVICKLFEANVHSYFFVERLDKSLFCSFFIP 714

[Close]

BLAST of Sed0027483 vs. NCBI nr
Match: QIT04190.1 (Ycf1 protein [Sechium edule])

HSP 1 Score: 99.0 bits (245), Expect = 5.6e-17
Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 0


Query: 55  KTEQRGESEKETDVEIETTSRTEGTKQEQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEI 114
           +TEQRGESEKETDVEIETTS T+GTKQEQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEI
Sbjct: 251 ETEQRGESEKETDVEIETTSETKGTKQEQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEI 310

Query: 115 RLEQQE 121
           R+  +E
Sbjct: 311 RVNGKE 316

HSP 2 Score: 196.8 bits (499), Expect = 2.0e-46
Identity = 101/112 (90.18%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 116 LEQQEGENKQKIASDNQIRSRKAKRVVILNDNLETSDTSPNTTDTDTPDQPKKVVLIRYS 175
           LEQQEGEN++KIASDNQIRSRKAKRVVILNDNLETSDTSPNTTDTDTPD+PKKVVLIRYS
Sbjct: 604 LEQQEGENRKKIASDNQIRSRKAKRVVILNDNLETSDTSPNTTDTDTPDEPKKVVLIRYS 663

Query: 176 QQSDFRRDIIKGSMRAQRRKTVICKLFEANVHSYFFVERLDKSLFCSFLFPE 228
           QQSDFRRDIIKGS+RAQRRKTV CKLFEANVHSYFFVERLD+S F SF  P+
Sbjct: 664 QQSDFRRDIIKGSIRAQRRKTVTCKLFEANVHSYFFVERLDQSFFFSFFIPK 715

[Close]

BLAST of Sed0027483 vs. NCBI nr
Match: QWQ50148.1 (hypothetical protein RF1 [Cyclanthera pedata])

HSP 1 Score: 90.1 bits (222), Expect = 2.6e-14
Identity = 56/66 (84.85%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 55  KTEQRGESEKETDVEIETTSRTEGTKQEQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEI 114
           +TEQRGES+KETDVEIETTS T+GTK  QEQEGSTEEDTSPSLFSEEKEDPDKIDETEEI
Sbjct: 251 ETEQRGESDKETDVEIETTSETKGTK--QEQEGSTEEDTSPSLFSEEKEDPDKIDETEEI 310

Query: 115 RLEQQE 121
           R+  +E
Sbjct: 311 RVNGKE 314

HSP 2 Score: 196.8 bits (499), Expect = 2.0e-46
Identity = 101/112 (90.18%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 116 LEQQEGENKQKIASDNQIRSRKAKRVVILNDNLETSDTSPNTTDTDTPDQPKKVVLIRYS 175
           LEQQEGEN++KIASDNQIRSRKAKRVVILNDNLETSDTSPNTTDTDTPD+PKKVVLIRYS
Sbjct: 605 LEQQEGENRKKIASDNQIRSRKAKRVVILNDNLETSDTSPNTTDTDTPDEPKKVVLIRYS 664

Query: 176 QQSDFRRDIIKGSMRAQRRKTVICKLFEANVHSYFFVERLDKSLFCSFLFPE 228
           QQSDFRRDIIKGS+RAQRRKTV CKLFEANVHSYFFVERLD+S F SF  P+
Sbjct: 665 QQSDFRRDIIKGSIRAQRRKTVTCKLFEANVHSYFFVERLDQSFFFSFFIPK 716

[Close]

BLAST of Sed0027483 vs. NCBI nr
Match: YP_009751963.1 (Ycf1 protein [Cyclanthera pedata] >QIT04781.1 Ycf1 protein [Cyclanthera pedata])

HSP 1 Score: 90.1 bits (222), Expect = 2.6e-14
Identity = 56/66 (84.85%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 55  KTEQRGESEKETDVEIETTSRTEGTKQEQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEI 114
           +TEQRGES+KETDVEIETTS T+GTK  QEQEGSTEEDTSPSLFSEEKEDPDKIDETEEI
Sbjct: 252 ETEQRGESDKETDVEIETTSETKGTK--QEQEGSTEEDTSPSLFSEEKEDPDKIDETEEI 311

Query: 115 RLEQQE 121
           R+  +E
Sbjct: 312 RVNGKE 315

HSP 2 Score: 166.4 bits (420), Expect = 2.9e-37
Identity = 116/223 (52.02%), Postives = 134/223 (60.09%), Query Frame = 0


Query: 55  KTEQRGESEKETDVEIETTSRTEGTKQEQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEI 114
           +T +  E E+ETDVEIETT  T+GTK  QEQEGSTEED S SLFSEEKE+PDKIDETEEI
Sbjct: 251 ETSETEEREEETDVEIETTPETKGTK--QEQEGSTEEDPSSSLFSEEKENPDKIDETEEI 310

Query: 115 R--------------------------------------------------LEQQEGENK 174
           R                                                  LEQQEGEN+
Sbjct: 311 RVNGKEKTKDEFHFHFKETCYKNRPVVKKSTEIKKEISKQIPRWSYKLIDDLEQQEGENE 370

Query: 175 QKIASDNQIRSRKAKRVVILNDNLETSDT----SPNTTDTDTPDQPKKVVLIRYSQQSDF 224
           +  A D++IRSRKAKRVVI  DN E  D+    +  T DT   DQ  +V LIRYSQQSDF
Sbjct: 371 ENAAEDHEIRSRKAKRVVIFTDNQENPDSNTYNNSKTKDTTNFDQTGEVALIRYSQQSDF 430

[Close]

BLAST of Sed0027483 vs. NCBI nr
Match: QJD26354.1 (Ycf1 [Trichosanthes kirilowii] >QJD26441.1 Ycf1 [Trichosanthes kirilowii])

HSP 1 Score: 159.1 bits (401), Expect = 4.6e-35
Identity = 85/111 (76.58%), Postives = 92/111 (82.88%), Query Frame = 0


Query: 116 LEQQEGENKQKIASDNQIRSRKAKRVVILNDNLETSDTSPNTTDTDTPDQPKKVVLIRYS 175
           LEQQEGEN + +A D++IRSRKAKRVVI  DNLETSDT  NTTDT+ PDQ  +V LIRYS
Sbjct: 606 LEQQEGENDESMAEDHEIRSRKAKRVVIFTDNLETSDTYTNTTDTNNPDQTDEVALIRYS 665

Query: 176 QQSDFRRDIIKGSMRAQRRKTVICKLFEANVHSYFFVERLDKSLFCSFLFP 227
           QQSDFRRDIIKGSMRAQRRKTV  KLF+ANVHSY F ERLDKS F SF  P
Sbjct: 666 QQSDFRRDIIKGSMRAQRRKTVTWKLFQANVHSYLFFERLDKSFFFSFDIP 716

[Close]

BLAST of Sed0027483 vs. ExPASy Swiss-Prot
Match: Q2L951 (Protein TIC 214 OS=Gossypium hirsutum OX=3635 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.1e-30
Identity = 69/108 (63.89%), Postives = 87/108 (80.56%), Query Frame = 0


Query: 116 LEQQEGENKQKIASDNQIRSRKAKRVVILNDNLETSDTSPNTTDTDTPDQPKKVVLIRYS 175
           LEQQEGEN++ + ++++IRSRK+KRVVI  +N   +DT  NT D + PDQ  +V LIRYS
Sbjct: 634 LEQQEGENEENVTAEHEIRSRKSKRVVIFTNNQANADTYTNTKDANDPDQTDEVALIRYS 693

Query: 176 QQSDFRRDIIKGSMRAQRRKTVICKLFEANVHSYFFVERLDKSLFCSF 224
           QQSDFRRDIIKGSMRAQRRKT+  +LF+ANVHS  F++R+DK LF SF
Sbjct: 694 QQSDFRRDIIKGSMRAQRRKTITWELFQANVHSPLFLDRVDKPLFFSF 741

[Close]

BLAST of Sed0027483 vs. ExPASy Swiss-Prot
Match: A0ZZ93 (Protein TIC 214 OS=Gossypium barbadense OX=3634 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.1e-29
Identity = 68/108 (62.96%), Postives = 85/108 (78.70%), Query Frame = 0


Query: 116 LEQQEGENKQKIASDNQIRSRKAKRVVILNDNLETSDTSPNTTDTDTPDQPKKVVLIRYS 175
           LEQQEGEN++ + ++++IRSRK+KRVVI  +N   +DT  NT D   PDQ  +V LIRYS
Sbjct: 631 LEQQEGENEENVTAEHEIRSRKSKRVVIFTNNQANADTYTNTKDAIDPDQTDEVALIRYS 690

Query: 176 QQSDFRRDIIKGSMRAQRRKTVICKLFEANVHSYFFVERLDKSLFCSF 224
           QQSDFRRDIIKGSMRAQRRKT+  +LF+ANVHS   ++R+DK LF SF
Sbjct: 691 QQSDFRRDIIKGSMRAQRRKTITWELFQANVHSPLCLDRVDKPLFFSF 738

[Close]

BLAST of Sed0027483 vs. ExPASy Swiss-Prot
Match: A6MM95 (Protein TIC 214 OS=Buxus microphylla OX=153571 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 6.7e-29
Identity = 70/108 (64.81%), Postives = 87/108 (80.56%), Query Frame = 0


Query: 116 LEQQEGENKQKIASDNQIRSRKAKRVVILNDNLETSDTSPNTTDTDTPDQPKKVVLIRYS 175
           LEQ+E EN++++A D++IRSRKAKRVVI NDN + +DT  NT++    DQ  +V LIRYS
Sbjct: 627 LEQEERENEEEVAEDHEIRSRKAKRVVIFNDNGQNTDTHTNTSN---DDQGNEVALIRYS 686

Query: 176 QQSDFRRDIIKGSMRAQRRKTVICKLFEANVHSYFFVERLDKSLFCSF 224
           QQSDFRRDIIKGSMRAQRRK V  KLF+ANVHS  F++R+DK+ F SF
Sbjct: 687 QQSDFRRDIIKGSMRAQRRKIVTWKLFQANVHSPLFLDRIDKTFFFSF 731

HSP 2 Score: 79.3 bits (194), Expect = 6.1e-14
Identity = 59/97 (60.82%), Postives = 68/97 (70.10%), Query Frame = 0


Query: 55  KTEQRGESEKETDVEIETTSRTEGTKQEQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEI 114
           KTE+RGESE+E DVEIETTS T+GTKQEQE+  STEED SPSL SEEKEDPDKIDETEEI
Sbjct: 251 KTEERGESEEERDVEIETTSETKGTKQEQER--STEEDPSPSLCSEEKEDPDKIDETEEI 310

Query: 115 RLEQQEGENKQKIASDNQIRSRKAKRVVILNDNLETS 152
           R+  +E    +    +   +SR       LN N E S
Sbjct: 311 RVNGKEKTKDE--FKETCYKSRPVYENYYLNGNQENS 343

[Close]

BLAST of Sed0027483 vs. ExPASy Swiss-Prot
Match: Q09WW0 (Protein TIC 214 OS=Morus indica OX=248361 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.3e-28
Identity = 66/108 (61.11%), Postives = 85/108 (78.70%), Query Frame = 0


Query: 116 LEQQEGENKQKIASDNQIRSRKAKRVVILNDNLETSDTSPNTTDTDTPDQPKKVVLIRYS 175
           LEQ+EGEN++ + +D+QIRSRK KRV+I N  LE ++   N+ DT+  D+   + LIRYS
Sbjct: 629 LEQEEGENEEALGTDSQIRSRKCKRVLIFNHELENTNGYSNSQDTNNNDERDDIALIRYS 688

Query: 176 QQSDFRRDIIKGSMRAQRRKTVICKLFEANVHSYFFVERLDKSLFCSF 224
           QQSDFRRDIIKGSMRAQRRKTVI K F+ANVHS  F++R+DK ++ SF
Sbjct: 689 QQSDFRRDIIKGSMRAQRRKTVIWKTFQANVHSLPFLDRIDKDVYFSF 736

HSP 2 Score: 61.6 bits (148), Expect = 1.3e-08
Identity = 43/58 (74.14%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 55  KTEQRGESEKETDVEIETTSRTEGTKQEQEQEGSTEEDTSPSLFSEEKEDPDKIDETE 113
           +TE+RGESE+E DV  E TS T+GTK  QEQEGSTEED SPSLFSEEKEDP+KID  E
Sbjct: 245 ETEERGESEEERDV--EKTSETKGTK--QEQEGSTEEDPSPSLFSEEKEDPEKIDFKE 298

[Close]

BLAST of Sed0027483 vs. ExPASy Swiss-Prot
Match: Q09FY8 (Protein TIC 214 OS=Platanus occidentalis OX=4403 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.3e-28
Identity = 68/108 (62.96%), Postives = 85/108 (78.70%), Query Frame = 0


Query: 116 LEQQEGENKQKIASDNQIRSRKAKRVVILNDNLETSDTSPNTTDTDTPDQPKKVVLIRYS 175
           LEQQEGE +++ A D+QIRSRKAKRVVI  DN   ++T  NT +T   D+ ++V LIRYS
Sbjct: 663 LEQQEGEYEEESAEDHQIRSRKAKRVVIFTDNEPDTNTHTNTNNTSDRDEVEEVALIRYS 722

Query: 176 QQSDFRRDIIKGSMRAQRRKTVICKLFEANVHSYFFVERLDKSLFCSF 224
           QQ DFRRDIIKGSMRAQRRK VI +LF+ANVHS  F++++DK+ F SF
Sbjct: 723 QQPDFRRDIIKGSMRAQRRKIVIWELFQANVHSPLFLDKIDKTFFFSF 770

HSP 2 Score: 75.9 bits (185), Expect = 6.7e-13
Identity = 49/66 (74.24%), Postives = 56/66 (84.85%), Query Frame = 0


Query: 55  KTEQRGESEKETDVEIETTSRTEGTKQEQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEI 114
           K +Q G+SE+ETDVEIETTS T+ TK  +EQEGSTEED SPSL+SEEKEDPDKIDETEEI
Sbjct: 260 KMKQMGQSEEETDVEIETTSETKETK--EEQEGSTEEDPSPSLYSEEKEDPDKIDETEEI 319

Query: 115 RLEQQE 121
           R+   E
Sbjct: 320 RVNGNE 323

[Close]

BLAST of Sed0027483 vs. ExPASy TrEMBL
Match: A0A6H0EQ81 (Protein TIC 214 OS=Sechium edule OX=184140 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 6.4e-51
Identity = 109/111 (98.20%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 116 LEQQEGENKQKIASDNQIRSRKAKRVVILNDNLETSDTSPNTTDTDTPDQPKKVVLIRYS 175
           LEQQEGENKQKIASDNQIRSRKAKRVVILNDNLETSDTSPNTTDTDTPDQPKKVVLIRYS
Sbjct: 604 LEQQEGENKQKIASDNQIRSRKAKRVVILNDNLETSDTSPNTTDTDTPDQPKKVVLIRYS 663

Query: 176 QQSDFRRDIIKGSMRAQRRKTVICKLFEANVHSYFFVERLDKSLFCSFLFP 227
           QQSDFRRDIIKGSMRAQRRKTVICKLFEANVHSYFFVERLDKSLFCSF  P
Sbjct: 664 QQSDFRRDIIKGSMRAQRRKTVICKLFEANVHSYFFVERLDKSLFCSFFIP 714

[Close]

BLAST of Sed0027483 vs. ExPASy TrEMBL
Match: A0A6H0EQ81 (Protein TIC 214 OS=Sechium edule OX=184140 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.7e-17
Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 0


Query: 55  KTEQRGESEKETDVEIETTSRTEGTKQEQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEI 114
           +TEQRGESEKETDVEIETTS T+GTKQEQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEI
Sbjct: 251 ETEQRGESEKETDVEIETTSETKGTKQEQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEI 310

Query: 115 RLEQQE 121
           R+  +E
Sbjct: 311 RVNGKE 316

HSP 2 Score: 196.8 bits (499), Expect = 9.6e-47
Identity = 101/112 (90.18%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 116 LEQQEGENKQKIASDNQIRSRKAKRVVILNDNLETSDTSPNTTDTDTPDQPKKVVLIRYS 175
           LEQQEGEN++KIASDNQIRSRKAKRVVILNDNLETSDTSPNTTDTDTPD+PKKVVLIRYS
Sbjct: 605 LEQQEGENRKKIASDNQIRSRKAKRVVILNDNLETSDTSPNTTDTDTPDEPKKVVLIRYS 664

Query: 176 QQSDFRRDIIKGSMRAQRRKTVICKLFEANVHSYFFVERLDKSLFCSFLFPE 228
           QQSDFRRDIIKGS+RAQRRKTV CKLFEANVHSYFFVERLD+S F SF  P+
Sbjct: 665 QQSDFRRDIIKGSIRAQRRKTVTCKLFEANVHSYFFVERLDQSFFFSFFIPK 716

[Close]

BLAST of Sed0027483 vs. ExPASy TrEMBL
Match: A0A6H0ER70 (Protein TIC 214 OS=Cyclanthera pedata OX=198836 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.3e-14
Identity = 56/66 (84.85%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 55  KTEQRGESEKETDVEIETTSRTEGTKQEQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEI 114
           +TEQRGES+KETDVEIETTS T+GTK  QEQEGSTEEDTSPSLFSEEKEDPDKIDETEEI
Sbjct: 252 ETEQRGESDKETDVEIETTSETKGTK--QEQEGSTEEDTSPSLFSEEKEDPDKIDETEEI 311

Query: 115 RLEQQE 121
           R+  +E
Sbjct: 312 RVNGKE 315

HSP 2 Score: 166.4 bits (420), Expect = 1.4e-37
Identity = 116/223 (52.02%), Postives = 134/223 (60.09%), Query Frame = 0


Query: 55  KTEQRGESEKETDVEIETTSRTEGTKQEQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEI 114
           +T +  E E+ETDVEIETT  T+GTK  QEQEGSTEED S SLFSEEKE+PDKIDETEEI
Sbjct: 251 ETSETEEREEETDVEIETTPETKGTK--QEQEGSTEEDPSSSLFSEEKENPDKIDETEEI 310

Query: 115 R--------------------------------------------------LEQQEGENK 174
           R                                                  LEQQEGEN+
Sbjct: 311 RVNGKEKTKDEFHFHFKETCYKNRPVVKKSTEIKKEISKQIPRWSYKLIDDLEQQEGENE 370

Query: 175 QKIASDNQIRSRKAKRVVILNDNLETSDT----SPNTTDTDTPDQPKKVVLIRYSQQSDF 224
           +  A D++IRSRKAKRVVI  DN E  D+    +  T DT   DQ  +V LIRYSQQSDF
Sbjct: 371 ENAAEDHEIRSRKAKRVVIFTDNQENPDSNTYNNSKTKDTTNFDQTGEVALIRYSQQSDF 430

[Close]

BLAST of Sed0027483 vs. ExPASy TrEMBL
Match: A0A6M3S424 (Protein TIC 214 OS=Trichosanthes kirilowii OX=3677 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 2.2e-35
Identity = 85/111 (76.58%), Postives = 92/111 (82.88%), Query Frame = 0


Query: 116 LEQQEGENKQKIASDNQIRSRKAKRVVILNDNLETSDTSPNTTDTDTPDQPKKVVLIRYS 175
           LEQQEGEN + +A D++IRSRKAKRVVI  DNLETSDT  NTTDT+ PDQ  +V LIRYS
Sbjct: 606 LEQQEGENDESMAEDHEIRSRKAKRVVIFTDNLETSDTYTNTTDTNNPDQTDEVALIRYS 665

Query: 176 QQSDFRRDIIKGSMRAQRRKTVICKLFEANVHSYFFVERLDKSLFCSFLFP 227
           QQSDFRRDIIKGSMRAQRRKTV  KLF+ANVHSY F ERLDKS F SF  P
Sbjct: 666 QQSDFRRDIIKGSMRAQRRKTVTWKLFQANVHSYLFFERLDKSFFFSFDIP 716

[Close]

BLAST of Sed0027483 vs. ExPASy TrEMBL
Match: A0A6M3S424 (Protein TIC 214 OS=Trichosanthes kirilowii OX=3677 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.7e-14
Identity = 55/66 (83.33%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 55  KTEQRGESEKETDVEIETTSRTEGTKQEQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEI 114
           +TE+RGESE+ETDVEIETTS T+GTK  QEQEGSTEEDTSPSLFSEEKEDPDKIDETEEI
Sbjct: 251 ETEERGESEEETDVEIETTSETKGTK--QEQEGSTEEDTSPSLFSEEKEDPDKIDETEEI 310

Query: 115 RLEQQE 121
           R+  +E
Sbjct: 311 RVNGKE 314

HSP 2 Score: 159.1 bits (401), Expect = 2.2e-35
Identity = 85/111 (76.58%), Postives = 92/111 (82.88%), Query Frame = 0


Query: 116 LEQQEGENKQKIASDNQIRSRKAKRVVILNDNLETSDTSPNTTDTDTPDQPKKVVLIRYS 175
           LEQQEGEN + +A D++IRSRKAKRVVI  DNLETSDT  NTTDT+ PDQ  +V LIRYS
Sbjct: 608 LEQQEGENDESMAEDHEIRSRKAKRVVIFTDNLETSDTYTNTTDTNNPDQTDEVALIRYS 667

Query: 176 QQSDFRRDIIKGSMRAQRRKTVICKLFEANVHSYFFVERLDKSLFCSFLFP 227
           QQSDFRRDIIKGSMRAQRRKTV  KLF+ANVHSY F ERLDKS F SF  P
Sbjct: 668 QQSDFRRDIIKGSMRAQRRKTVTWKLFQANVHSYLFFERLDKSFFFSFDIP 718

[Close]

BLAST of Sed0027483 vs. TAIR 10
Match: ATCG01130.1 (Ycf1 protein )

HSP 1 Score: 86.7 bits (213), Expect = 2.7e-17
Identity = 70/187 (37.43%), Postives = 103/187 (55.08%), Query Frame = 0


Query: 39  EGTEKKYQQQQVLLQDKTEQRGESEKETDVEIETTSRTEGTKQEQEQEGSTEEDTSPSL- 98
           E T +K+ ++ + ++ K     E ++E  +  E   +T     +  +  S ++    +  
Sbjct: 536 EQTIEKFNRKSLSIEKKLSFFSEPQQEEKINSEEEIKTFKFLFDIVRTDSNDQTLIKNFM 595

Query: 99  -FSEEKEDPDKIDETEEIRLEQQEGENKQKIASDNQIRSRKAKRVVILNDNLETSDTSPN 158
            F E  +   +        LE+ EGEN++ +  +  IRSRKAKRVV+  D     +   N
Sbjct: 596 DFPEINKKVPRWSYKLISELEELEGENEENVPMEPGIRSRKAKRVVVFTDKEPHGEIYTN 655

Query: 159 TTDTDTPDQPKKVVLIRYSQQSDFRRDIIKGSMRAQRRKTVICKLFEANVHSYFFVERLD 218
             D    DQ  ++ LIRYSQQSDFRR+IIKGSMR+QRRKTVI + F+A VHS  F +R+D
Sbjct: 656 LKDNQNSDQNDEMALIRYSQQSDFRREIIKGSMRSQRRKTVIWEFFQAKVHSPLFFDRID 715

Query: 219 KSLFCSF 224
           K  F SF
Sbjct: 716 KLFFFSF 722

[Close]

BLAST of Sed0027483 vs. TAIR 10
Match: ATCG01000.1 (Ycf1 protein )

HSP 1 Score: 43.1 bits (100), Expect = 3.4e-04
Identity = 39/88 (44.32%), Postives = 51/88 (57.95%), Query Frame = 0


Query: 69  EIETTSRTEGTKQEQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIRLEQQEGENKQKIA 128
           +++ TS T GTKQ+QE   STEE   PSLFSEE ED DKIDE EEIR+       K KI 
Sbjct: 251 KLKGTSETGGTKQDQEV--STEEAPFPSLFSEEGEDLDKIDEMEEIRV-----NGKDKIN 310

Query: 129 SDNQIRSRKAKRVVILNDNLETSDTSPN 157
            D++   R       +++NL  +  + N
Sbjct: 311 KDDEFHVRTYYNYKTVSENLYGNKENSN 331

The following BLAST results are available for this feature:

BLAST of Sed0027483 vs. NCBI nr


Match Name	E-value	Identity	Description
QIT04190.1	1.3e-50	98.20	Ycf1 protein [Sechium edule]	[more]
QIT04190.1	5.6e-17	89.39	Ycf1 protein [Sechium edule]	[more]
QWQ50148.1	2.6e-14	84.85	hypothetical protein RF1 [Cyclanthera pedata]	[more]
YP_009751963.1	2.6e-14	84.85	Ycf1 protein [Cyclanthera pedata] >QIT04781.1 Ycf1 protein [Cyclanthera pedata]	[more]
QJD26354.1	4.6e-35	76.58	Ycf1 [Trichosanthes kirilowii] >QJD26441.1 Ycf1 [Trichosanthes kirilowii]	[more]

Pages

BLAST of Sed0027483 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2L951	2.1e-30	63.89	Protein TIC 214 OS=Gossypium hirsutum OX=3635 GN=TIC214 PE=3 SV=1	[more]
A0ZZ93	5.1e-29	62.96	Protein TIC 214 OS=Gossypium barbadense OX=3634 GN=TIC214 PE=3 SV=1	[more]
A6MM95	6.7e-29	64.81	Protein TIC 214 OS=Buxus microphylla OX=153571 GN=TIC214 PE=3 SV=1	[more]
Q09WW0	3.3e-28	61.11	Protein TIC 214 OS=Morus indica OX=248361 GN=TIC214 PE=3 SV=1	[more]
Q09FY8	4.3e-28	62.96	Protein TIC 214 OS=Platanus occidentalis OX=4403 GN=TIC214 PE=3 SV=1	[more]

BLAST of Sed0027483 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6H0EQ81	6.4e-51	98.20	Protein TIC 214 OS=Sechium edule OX=184140 GN=ycf1 PE=3 SV=1	[more]
A0A6H0EQ81	2.7e-17	89.39	Protein TIC 214 OS=Sechium edule OX=184140 GN=ycf1 PE=3 SV=1	[more]
A0A6H0ER70	1.3e-14	84.85	Protein TIC 214 OS=Cyclanthera pedata OX=198836 GN=ycf1 PE=3 SV=1	[more]
A0A6M3S424	2.2e-35	76.58	Protein TIC 214 OS=Trichosanthes kirilowii OX=3677 GN=ycf1 PE=3 SV=1	[more]
A0A6M3S424	3.7e-14	83.33	Protein TIC 214 OS=Trichosanthes kirilowii OX=3677 GN=ycf1 PE=3 SV=1	[more]

Pages

BLAST of Sed0027483 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG01130.1	2.7e-17	37.43	Ycf1 protein	[more]
ATCG01000.1	3.4e-04	44.32	Ycf1 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008896	Protein TIC214	PFAM	PF05758	Ycf1	coord: 116..223 e-value: 9.5E-42 score: 142.9 coord: 54..116 e-value: 4.9E-16 score: 57.8
IPR008896	Protein TIC214	PANTHER	PTHR33163	PROTEIN TIC 214-RELATED	coord: 55..115
IPR008896	Protein TIC214	PANTHER	PTHR33163	PROTEIN TIC 214-RELATED	coord: 116..225
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 146..164
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 144..165
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..108
None	No IPR available	PANTHER	PTHR33163:SF13	PROTEIN TIC 214-RELATED	coord: 55..115
None	No IPR available	PANTHER	PTHR33163:SF13	PROTEIN TIC 214-RELATED	coord: 116..225

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0027483.1	Sed0027483.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0016021	integral component of membrane