Sed0027417 (gene) Chayote v1

Overview


Name	Sed0027417
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Signal sequence receptor subunit alpha
Location	LG04: 46974556 .. 46978942 (-)
RNA-Seq Expression	Sed0027417
Synteny	Sed0027417

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAAAATTCAACATCAACAATATCAGACAACATCTCCATTAATACTTAAGCATAAATAATCGATAGACACCATACTTCAATAAGAAAGTGAGATTACAAATACCAATTCCGAAGTTCGATCCTGTCAACCAGATAACCAATCACGTGACCGATTAAGTAAAAAAAATTAGCAATCGGGGGAACCGGGTTCTTTTTTGGATTCCCAAATAAACGTGGCCCATACTCATAGATCCCCAACCAACATTGACTCTGGGAATTCGAAGTTTGGTCGTCTTTCTCTCTAATCGGATTCTTCAGCTCTCAAATCTTCGCTTTCCCTTTGATTCGCCGCTTTGTCAGCCATGAACGCCTTCACAGTTTTCTTCCTAGCCCTAATTCTTTTCGCCTCTCCATTTCTCCCAGGTTCGCCCTTTTTTTCCAATCTCAGATCTACTTTTTTGGTCATCATTTCGGAATTCCGGACTCTTGTTTTGAAATTGCCCTGTTTGATTAGATTTTGCATCTTGTTGCGCATGCATGGTTTTCGATCGAGATTTTTCTGTTCTAATGGGTTCTGGGTGTTTGACTATTTTGGGGTTTGATTGTTGGGAGTTTAGATTTTTCATTTTGTATTGAATCGTGTCTTTCCCATTTGTATTTTGTTTTTCTTTGACTGATTTTGATGGTGAAGTGAGTTTAATTGATTAATTGATCATTCATTGAAGAAGTTTATTTTGGGGACTTCATTGTCAAATTGTTTGTCTATTGTCAATAATTGATTGTAGATTTCTAACCTCAATTCCTCGTCCTCTTTTGTGAATTAGCCAAATTTTTGTTTCATTGAATCTACTAGTAGAATGGTGAGGTGCAGCTAAAGGGGGAGGGATAAAAAATATGCAGTCACTTTTCTCGTTTGGAACATGCATGAAGTCTAGCTAGAGAATCGAAGAATGTGTTTTTGTTGTCTTTCGTTGAATGCATGTAATTTCATTGTTCTAGCTGCTTTTTTTACCTTGTTGTTTATTTGATTGATAGTTGCCACTTGTCAATCGAACTCCGATGGTGAAACGTCTGAGATTGTTGAAGAAGCTAGTGATCTTGGAATTGTGGGTGAAGAAGATTCTCAGGATTTTGGAGAAGTGAACTTCGGTACAGCTCCAGGAGTCGATACTGTCTGCATTTTCCCGAAAAATAGTGCACGCAGTAAGTGTTAAGCTAGATTCATTGGTAAATCATAAATGTTTGTTTTCTTTGATAGGCGTGGCATGCTTTTGTGGTATCGATTAATTGACATCGGATTCATGTCTTTTATTGCAGTAGTGCAAGCTGGAGAAGAGACCGAACTACTTGCAGGGGTGAAAAATGAGGGTAACTAACTCTAATCTGCTTAACCTTTTGGCCTTGTACATCCAAAAGATAATCACAGGCATCTTTGAACTTGAAAGTTGCCTCTTCTAGTTGATCTTGTCGCAGTTTCGATTAATCTGGAATTCTTTTATTGGCTGGGTTTTCATCTGAAATTACACTCCTCAGCATTACATTGGCTTCTTTGATTTTTTTTATAGGAAACAAAATCTTCATTGATGAATGAAAAGATTACAAATCCTATCAAAACGTTACAAAAAATTATGCCATTGAGATATCAAGGTAGATAAATCATAGTTAGAAAAGGGAGGGGATTTATGACACCTATACAACACCAAAAAACGGCAGAATCGACAAGTGTGCTAAAATCCTTTGGGGAATATTCCATCTCGAACAGTCTGCTATTACGTTCCGTCCAACAAGACCAAAGATAGGCAAAAATGAAGTTGGTCCATAGGATCTCTCTCTCTTTCTTGAATGGTGGCCCATTAGCACATAACGGAGGAGATCTGGGGCAGATTTAGGAATAAGTGTGGCCCATTGGCTTCTTTGATTTAATTTTGTTAAACGTGGCATTGAAAGGCTAGTGTTTATTATCGCTTTCCATTGATCCAAAACCTTGTATGTCAATAATTTCCTTTATTGCTATTTGTTAATCCAGGTGAATCAAGCTTGAATATTATAGCTATTAAGGCCAGCATTCATTACACTTTTGATCATCGCATGTTGATTCAAAATCTTACTGGACAGGTAATCCCAGCCTGACTTATGGTTATTAAATAGAGTTGCTGTGTCATGTGATCTCAAATTGTCTTTTTTTTCCTTTTTCTTTGTCTCTAATACATTTAATGAATACAAGCATAATTTCCTTGATTTGAAAGATACGAGTTTTGGCAATTAGTTGTGGAGAACCTGGTAACTTCCTTGAAGAAGACATTCTATGCCACCTAGAATTCCTATAGTTTTGCCCTTCAGAGTTTGGGCACCATTAATTTAGTTGTACGCAATGAATATGGTTTTTCTTGTAATATATGTTTATATATTTTTCTCATTTTTTTCTTCTTTTTTCTTATTTCTGAAATCGTGGCTCATGTTTTCCTTTTCTTTTTAAGACAGTTTTTTGTCAGTTCATATTACTAGAATTGTCAGTTTCTAGAGAAAGATGTTCCTATTATTCTTTCTGCAATATGTTTTGTATCTCAATGTCGATTGTTATCTTTTTTATCCGAAGTGTCAACATTAATGATTGAAATTAATCTGTAGTTTTCCTGTTAGAAATTATCTTTAGGGAATTTATTGCTGCATATATATCATTCTGCTATTTTGAGTAACTATTCTTATTGTAAAGATAATATGACATAACTTGCATCTAAAGTTTAACATCCTCTCTATTTTTTAAAAGGTTTTTTGTGTAAAAGCTTATTTTAGTTTGGTTGCAGTAACTTCAGCTCCCTACTTTTAGCTTATATCATCTTCCTCGTTATGCTTGTAGGTTTTCCACAACGCAACGGTGCCACCATCAACCCAAGCATCTTATCCGTATGCATTTGCTGTCAGCAAGTTCTTGCAGGTTTATTCATAGTCATTATTATTGCAGTTTCTCGTCCTTTACTGTATGAATTTTCAGTTTACAGACTTACTAACCGGCATATCTTTTATCAATTTTGAAATTCTATTAATTGATGGAATGAAAACGCCATAATACATTCCTGATTTGCAGCCCGGAAACTTTGATCTAGTGGGCACCATCTATTATGAAATCGACCAGAATGCATACCAAAGCATCTTCTATAACGGTACTATTGAAGTTGTTGAACCTAGTGGTTTCCTTAGCATTGAGACTGTGTTTTTAGTCACTCTTGGTATTGCCCTTCTCGTTATTCTTGGCTTATGGATTCGTGGTCAAATACAGCAAAAACTCTCCAAGGTAAAGATCTTTCTGGACTTCATTTGATGATGCCAATGTATTCTAATTGTGGATGTTGCCTTATTTATATTCTTATTAGTTTGCGACTTAAAATAACCTAATTTTGGAAAACTAAGAGGTGAAGGGTTCAATTCATAGTGACCACCTACCTACCTAGGAATTAAGTTCCTACGCGTTTCCTTGATATTCAAATGTTGTAGGGTTAAATGGTATGTATCATGACAGGAGTCGAGATGTACACAAGCTGGCATAGTCAGTTATGGATATAAAAAAAATGAAAAGAAGTTTGCGACTTAAAATATATCTGAGGTCTTTTACAAGTATATACCGTCTGCCTTTTCTTTTATTAGTAACCGTGGTCTGTTCCTTCTTACGGAATTTTATGAGACTTCGATGTATGAACTATGAAGTATGAGAAGTGGAGCTGCAAGATGTGCATCTTTTCTAATTTAATTTTTTTTCTAGATGTATGTAAACGTTTTGACATCAAATACTGTGCAATTCCTTGTCTGTTTCAGAAACCCAAGAGGGCTGCTTCCAAGGTTGAAGTGGGAACAAAAACAGTTGATACCTCAATGGATGAATGGCTTCAGGTTTGTAATTGTTTCTGGAATTCATGTCTGGTGAAAATATCAGAAACTGCTGCTGATATATTTTGTAATCTTATCCTTAGGGCACTGCATACACTCGGTCCGGATCAAGCAAGTCGAAGAAGAAGATCTAGTTCAATCTCGTCTCCATCCCAGTTGCACAGCACACTGACAATGAGCGGATTCCTGCAACTCGCATTCGAGGTTGACTAGTTTTGTAAGTTAGGTTTGTTAAACAACCTTTCCCTGCAAGTGTGGCATGTGAAGGAATTGTTTCTTAATGCCAATCTAAATTAAGTCGGCTATAGAACAGTTTTCTGGGTCTAGAGAATTTTCCTTGGGGCATATGATTATCAAAGTTGAAACTTTTTAAACTTTCCTTGGAACCCTTTTTCTGTATTAATCACAATCTCTGCTTTGTTGAATCACCAATGTCGTTCTCTTTGACTTATTTTGCCTCTACTGCTTCTTTACTATAAGGTTTCGTGTTTGGATTTCATTTTTTTTTAATAGTTTCTTAACGAAG

mRNA sequence

CCAAAATTCAACATCAACAATATCAGACAACATCTCCATTAATACTTAAGCATAAATAATCGATAGACACCATACTTCAATAAGAAAGTGAGATTACAAATACCAATTCCGAAGTTCGATCCTGTCAACCAGATAACCAATCACGTGACCGATTAAGTAAAAAAAATTAGCAATCGGGGGAACCGGGTTCTTTTTTGGATTCCCAAATAAACGTGGCCCATACTCATAGATCCCCAACCAACATTGACTCTGGGAATTCGAAGTTTGGTCGTCTTTCTCTCTAATCGGATTCTTCAGCTCTCAAATCTTCGCTTTCCCTTTGATTCGCCGCTTTGTCAGCCATGAACGCCTTCACAGTTTTCTTCCTAGCCCTAATTCTTTTCGCCTCTCCATTTCTCCCAGTTGCCACTTGTCAATCGAACTCCGATGGTGAAACGTCTGAGATTGTTGAAGAAGCTAGTGATCTTGGAATTGTGGGTGAAGAAGATTCTCAGGATTTTGGAGAAGTGAACTTCGGTACAGCTCCAGGAGTCGATACTGTCTGCATTTTCCCGAAAAATAGTGCACGCATAGTGCAAGCTGGAGAAGAGACCGAACTACTTGCAGGGGTGAAAAATGAGGGTGAATCAAGCTTGAATATTATAGCTATTAAGGCCAGCATTCATTACACTTTTGATCATCGCATGTTGATTCAAAATCTTACTGGACAGGTTTTCCACAACGCAACGGTGCCACCATCAACCCAAGCATCTTATCCGTATGCATTTGCTGTCAGCAAGTTCTTGCAGCCCGGAAACTTTGATCTAGTGGGCACCATCTATTATGAAATCGACCAGAATGCATACCAAAGCATCTTCTATAACGGTACTATTGAAGTTGTTGAACCTAGTGGTTTCCTTAGCATTGAGACTGTGTTTTTAGTCACTCTTGGTATTGCCCTTCTCGTTATTCTTGGCTTATGGATTCGTGGTCAAATACAGCAAAAACTCTCCAAGAAACCCAAGAGGGCTGCTTCCAAGGTTGAAGTGGGAACAAAAACAGTTGATACCTCAATGGATGAATGGCTTCAGGGCACTGCATACACTCGGTCCGGATCAAGCAAGTCGAAGAAGAAGATCTAGTTCAATCTCGTCTCCATCCCAGTTGCACAGCACACTGACAATGAGCGGATTCCTGCAACTCGCATTCGAGGTTGACTAGTTTTGTAAGTTAGGTTTGTTAAACAACCTTTCCCTGCAAGTGTGGCATGTGAAGGAATTGTTTCTTAATGCCAATCTAAATTAAGTCGGCTATAGAACAGTTTTCTGGGTCTAGAGAATTTTCCTTGGGGCATATGATTATCAAAGTTGAAACTTTTTAAACTTTCCTTGGAACCCTTTTTCTGTATTAATCACAATCTCTGCTTTGTTGAATCACCAATGTCGTTCTCTTTGACTTATTTTGCCTCTACTGCTTCTTTACTATAAGGTTTCGTGTTTGGATTTCATTTTTTTTTAATAGTTTCTTAACGAAG

Coding sequence (CDS)

ATGAACGCCTTCACAGTTTTCTTCCTAGCCCTAATTCTTTTCGCCTCTCCATTTCTCCCAGTTGCCACTTGTCAATCGAACTCCGATGGTGAAACGTCTGAGATTGTTGAAGAAGCTAGTGATCTTGGAATTGTGGGTGAAGAAGATTCTCAGGATTTTGGAGAAGTGAACTTCGGTACAGCTCCAGGAGTCGATACTGTCTGCATTTTCCCGAAAAATAGTGCACGCATAGTGCAAGCTGGAGAAGAGACCGAACTACTTGCAGGGGTGAAAAATGAGGGTGAATCAAGCTTGAATATTATAGCTATTAAGGCCAGCATTCATTACACTTTTGATCATCGCATGTTGATTCAAAATCTTACTGGACAGGTTTTCCACAACGCAACGGTGCCACCATCAACCCAAGCATCTTATCCGTATGCATTTGCTGTCAGCAAGTTCTTGCAGCCCGGAAACTTTGATCTAGTGGGCACCATCTATTATGAAATCGACCAGAATGCATACCAAAGCATCTTCTATAACGGTACTATTGAAGTTGTTGAACCTAGTGGTTTCCTTAGCATTGAGACTGTGTTTTTAGTCACTCTTGGTATTGCCCTTCTCGTTATTCTTGGCTTATGGATTCGTGGTCAAATACAGCAAAAACTCTCCAAGAAACCCAAGAGGGCTGCTTCCAAGGTTGAAGTGGGAACAAAAACAGTTGATACCTCAATGGATGAATGGCTTCAGGGCACTGCATACACTCGGTCCGGATCAAGCAAGTCGAAGAAGAAGATCTAG

Protein sequence

MNAFTVFFLALILFASPFLPVATCQSNSDGETSEIVEEASDLGIVGEEDSQDFGEVNFGTAPGVDTVCIFPKNSARIVQAGEETELLAGVKNEGESSLNIIAIKASIHYTFDHRMLIQNLTGQVFHNATVPPSTQASYPYAFAVSKFLQPGNFDLVGTIYYEIDQNAYQSIFYNGTIEVVEPSGFLSIETVFLVTLGIALLVILGLWIRGQIQQKLSKKPKRAASKVEVGTKTVDTSMDEWLQGTAYTRSGSSKSKKKI

Homology

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BLAST of Sed0027417 vs. NCBI nr
Match: XP_023529772.1 (translocon-associated protein subunit alpha-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 449.5 bits (1155), Expect = 1.9e-122
Identity = 226/258 (87.60%), Postives = 247/258 (95.74%), Query Frame = 0


Query: 1   MNAFTVFFLALILFASPFLPVATCQSNSDGETSEIVEEASDLGIVGEEDSQDFGEVNFGT 60
           MN F VFFLA++L ASPFL VATCQS+S+GE S++VEEASDLG+VGEEDSQDFG+V FG+
Sbjct: 1   MNTFRVFFLAILLLASPFLRVATCQSDSEGEPSQVVEEASDLGVVGEEDSQDFGDVIFGS 60

Query: 61  APGVDTVCIFPKNSARIVQAGEETELLAGVKNEGESSLNIIAIKASIHYTFDHRMLIQNL 120
           APGV+TVC+FPKNSARIVQAG ET+LLAGVKN+GESSLNIIAIKAS+HYTFDHR+LIQNL
Sbjct: 61  APGVNTVCVFPKNSARIVQAGAETQLLAGVKNDGESSLNIIAIKASVHYTFDHRVLIQNL 120

Query: 121 TGQVFHNATVPPSTQASYPYAFAVSKFLQPGNFDLVGTIYYEIDQNAYQSIFYNGTIEVV 180
           TGQVFHNATVPPSTQASYPYAFAVSKFLQPGNFDLVGTIYYEIDQNAYQSIFYNGTI+V+
Sbjct: 121 TGQVFHNATVPPSTQASYPYAFAVSKFLQPGNFDLVGTIYYEIDQNAYQSIFYNGTIDVI 180

Query: 181 EPSGFLSIETVFLVTLGIALLVILGLWIRGQIQQKLSKKPKRAASKVEVGTKTVDTSMDE 240
           E SGF+SIETVFLVTLGIALLV+LGLWI G +QQKLSKKPKRAASKVEVGTKTVDTSMDE
Sbjct: 181 EASGFISIETVFLVTLGIALLVMLGLWIHGLVQQKLSKKPKRAASKVEVGTKTVDTSMDE 240

Query: 241 WLQGTAYTRSGSSKSKKK 259
           WLQGTAYT+S SSKSKKK
Sbjct: 241 WLQGTAYTQSSSSKSKKK 258

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BLAST of Sed0027417 vs. NCBI nr
Match: XP_038886848.1 (translocon-associated protein subunit alpha-like [Benincasa hispida])

HSP 1 Score: 448.4 bits (1152), Expect = 4.3e-122
Identity = 230/258 (89.15%), Postives = 242/258 (93.80%), Query Frame = 0


Query: 1   MNAFTVFFLALILFASPFLPVATCQSNSDGETSEIVEEASDLGIVGEEDSQDFGEVNFGT 60
           MNAF VFFLA +L ASPFL  ATCQS+SD E+SE VEE SDLGIVGEEDSQDFGEVNFG 
Sbjct: 1   MNAFRVFFLAFLLLASPFLQAATCQSDSDVESSEAVEEVSDLGIVGEEDSQDFGEVNFGP 60

Query: 61  APGVDTVCIFPKNSARIVQAGEETELLAGVKNEGESSLNIIAIKASIHYTFDHRMLIQNL 120
           APGVDTVC+FPKNSARIV AGEETELLAGVKN+GESSLNIIAIKASIHYTFDHR+LIQNL
Sbjct: 61  APGVDTVCVFPKNSARIVPAGEETELLAGVKNDGESSLNIIAIKASIHYTFDHRLLIQNL 120

Query: 121 TGQVFHNATVPPSTQASYPYAFAVSKFLQPGNFDLVGTIYYEIDQNAYQSIFYNGTIEVV 180
           TGQVFHNATVPPSTQA+YPY FAVSKFLQPGNFDLVGTI+YEIDQNAYQSIFYNGTIEVV
Sbjct: 121 TGQVFHNATVPPSTQATYPYMFAVSKFLQPGNFDLVGTIFYEIDQNAYQSIFYNGTIEVV 180

Query: 181 EPSGFLSIETVFLVTLGIALLVILGLWIRGQIQQKLSKKPKRAASKVEVGTKTVDTSMDE 240
           E SG +SIE+VFLVTLGIALLV+L LWI GQIQQKLSKKPKR ASKVEVGTKTVDTSMDE
Sbjct: 181 EASGIISIESVFLVTLGIALLVLLVLWIHGQIQQKLSKKPKRTASKVEVGTKTVDTSMDE 240

Query: 241 WLQGTAYTRSGSSKSKKK 259
           WLQGTAYT+SGSSKSKKK
Sbjct: 241 WLQGTAYTKSGSSKSKKK 258

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BLAST of Sed0027417 vs. NCBI nr
Match: XP_022989061.1 (translocon-associated protein subunit alpha-like [Cucurbita maxima])

HSP 1 Score: 446.0 bits (1146), Expect = 2.1e-121
Identity = 226/258 (87.60%), Postives = 245/258 (94.96%), Query Frame = 0


Query: 1   MNAFTVFFLALILFASPFLPVATCQSNSDGETSEIVEEASDLGIVGEEDSQDFGEVNFGT 60
           MN F VFFLA++L ASPFL VATCQS+S+GE S +VEEASDLG+VGEEDSQDFG+V FG+
Sbjct: 1   MNTFRVFFLAILLLASPFLRVATCQSDSEGEPSLVVEEASDLGVVGEEDSQDFGDVIFGS 60

Query: 61  APGVDTVCIFPKNSARIVQAGEETELLAGVKNEGESSLNIIAIKASIHYTFDHRMLIQNL 120
           APGV+TVC+FPKNSARIVQAG ETELLAGVKN+GESSLNIIAIKAS+HYTFDHR+LIQNL
Sbjct: 61  APGVNTVCVFPKNSARIVQAGAETELLAGVKNDGESSLNIIAIKASVHYTFDHRVLIQNL 120

Query: 121 TGQVFHNATVPPSTQASYPYAFAVSKFLQPGNFDLVGTIYYEIDQNAYQSIFYNGTIEVV 180
           TGQVFHNATVPPSTQASYPYAFAVSKFLQPGNFDLVGTIYYEIDQNAYQSIFYNGTIEV+
Sbjct: 121 TGQVFHNATVPPSTQASYPYAFAVSKFLQPGNFDLVGTIYYEIDQNAYQSIFYNGTIEVI 180

Query: 181 EPSGFLSIETVFLVTLGIALLVILGLWIRGQIQQKLSKKPKRAASKVEVGTKTVDTSMDE 240
           E SGF+SIETVFLVTLGIALLV+LGLWI G +QQKLSKKPKRAASKVEVGTKTVD+SMDE
Sbjct: 181 EASGFISIETVFLVTLGIALLVMLGLWIHGLVQQKLSKKPKRAASKVEVGTKTVDSSMDE 240

Query: 241 WLQGTAYTRSGSSKSKKK 259
           WLQGTAYT+S SSK KKK
Sbjct: 241 WLQGTAYTQSASSKLKKK 258

[Close]

BLAST of Sed0027417 vs. NCBI nr
Match: KAG6572098.1 (Translocon-associated protein subunit alpha, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011750.1 Translocon-associated protein subunit alpha [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 444.1 bits (1141), Expect = 8.2e-121
Identity = 226/258 (87.60%), Postives = 242/258 (93.80%), Query Frame = 0


Query: 1   MNAFTVFFLALILFASPFLPVATCQSNSDGETSEIVEEASDLGIVGEEDSQDFGEVNFGT 60
           M  F VFFLAL+L ASPFL  ATCQS+SDGE+SE VEEASDLG+VGEEDSQDFGEVNFG 
Sbjct: 1   MKTFRVFFLALLLLASPFLQAATCQSDSDGESSEAVEEASDLGVVGEEDSQDFGEVNFGP 60

Query: 61  APGVDTVCIFPKNSARIVQAGEETELLAGVKNEGESSLNIIAIKASIHYTFDHRMLIQNL 120
           APGVDTVC+FPKNSARIV AGEETELLAGVKN+GESSLN+IAIKAS+HYTFDHRMLIQNL
Sbjct: 61  APGVDTVCVFPKNSARIVPAGEETELLAGVKNDGESSLNVIAIKASVHYTFDHRMLIQNL 120

Query: 121 TGQVFHNATVPPSTQASYPYAFAVSKFLQPGNFDLVGTIYYEIDQNAYQSIFYNGTIEVV 180
           TGQVFHNATVPPSTQASYPY FAVSKFLQPGNFDLVGTI+YEIDQ AYQS+F+NGTIEVV
Sbjct: 121 TGQVFHNATVPPSTQASYPYIFAVSKFLQPGNFDLVGTIFYEIDQTAYQSVFFNGTIEVV 180

Query: 181 EPSGFLSIETVFLVTLGIALLVILGLWIRGQIQQKLSKKPKRAASKVEVGTKTVDTSMDE 240
           E SG +S+ETVFLVTLGIALLV+LGLWI GQIQQKLSKKPKR ASKVEVGTKT+DTSMDE
Sbjct: 181 EASGLISMETVFLVTLGIALLVLLGLWIHGQIQQKLSKKPKRVASKVEVGTKTIDTSMDE 240

Query: 241 WLQGTAYTRSGSSKSKKK 259
           WLQGTA+TRS SSKSKKK
Sbjct: 241 WLQGTAFTRS-SSKSKKK 257

[Close]

BLAST of Sed0027417 vs. NCBI nr
Match: XP_023553718.1 (translocon-associated protein subunit alpha-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 442.2 bits (1136), Expect = 3.1e-120
Identity = 226/258 (87.60%), Postives = 241/258 (93.41%), Query Frame = 0


Query: 1   MNAFTVFFLALILFASPFLPVATCQSNSDGETSEIVEEASDLGIVGEEDSQDFGEVNFGT 60
           M  F VFFLAL+L ASPFL  ATCQS+SDGE+SE VEEASD+GIVGEEDSQDFGEVNFG 
Sbjct: 1   MKTFRVFFLALLLLASPFLQAATCQSDSDGESSEAVEEASDIGIVGEEDSQDFGEVNFGP 60

Query: 61  APGVDTVCIFPKNSARIVQAGEETELLAGVKNEGESSLNIIAIKASIHYTFDHRMLIQNL 120
           APGVDTVC+FPKNSARIV AGEETELLAGVKN+GESSLN+IAIKASIHYTFDHRMLIQNL
Sbjct: 61  APGVDTVCVFPKNSARIVPAGEETELLAGVKNDGESSLNVIAIKASIHYTFDHRMLIQNL 120

Query: 121 TGQVFHNATVPPSTQASYPYAFAVSKFLQPGNFDLVGTIYYEIDQNAYQSIFYNGTIEVV 180
           TGQVFHNATVPPS QASYPY FAVSKFLQPGNFDLVGTI+YEIDQ AYQS+F+NGTIEVV
Sbjct: 121 TGQVFHNATVPPSAQASYPYIFAVSKFLQPGNFDLVGTIFYEIDQTAYQSVFFNGTIEVV 180

Query: 181 EPSGFLSIETVFLVTLGIALLVILGLWIRGQIQQKLSKKPKRAASKVEVGTKTVDTSMDE 240
           E SG +S+ETVFLVTLGIALLV+LGLWI GQIQQKLSKKPKR ASKVEVGTKT+DTSMDE
Sbjct: 181 EASGLISMETVFLVTLGIALLVLLGLWIHGQIQQKLSKKPKRVASKVEVGTKTIDTSMDE 240

Query: 241 WLQGTAYTRSGSSKSKKK 259
           WLQGTA+TRS SSKSKKK
Sbjct: 241 WLQGTAFTRS-SSKSKKK 257

[Close]

BLAST of Sed0027417 vs. ExPASy Swiss-Prot
Match: P45434 (Translocon-associated protein subunit alpha OS=Arabidopsis thaliana OX=3702 GN=At2g21160 PE=2 SV=3)

HSP 1 Score: 265.4 bits (677), Expect = 6.8e-70
Identity = 138/256 (53.91%), Postives = 193/256 (75.39%), Query Frame = 0


Query: 6   VFFLALILFASPFLPVATCQSNSDGETS---EIVEEASDLGIVGEEDSQDFGEVNFGTAP 65
           V FLAL+L ASP L VA CQS+++  +S   ++V E +D  +  EED  D  ++N  + P
Sbjct: 6   VLFLALLLLASPLLQVARCQSDAEDHSSLVDDVVGENTDDAV--EEDDHDL-DMNLSSFP 65

Query: 66  GVDTVCIFPKNSARIVQAGEETELLAGVKNEGESSLNIIAIKASIHYTFDHRMLIQNLTG 125
           GV+TVC+FPKNSA++V AGEETELL G+KNEG++ + ++ I+AS+H  +DH++L+QNLT 
Sbjct: 66  GVETVCVFPKNSAKLVPAGEETELLVGLKNEGKTRVGVMGIRASVHLPYDHKLLVQNLTM 125

Query: 126 QVFHNATVPPSTQASYPYAFAVSKFLQPGNFDLVGTIYYEIDQNAYQSIFYNGTIEVVEP 185
              +NA++P S QA++PY FAVS++LQPG FDLVG I Y+++   YQS+FYNGTIEVVE 
Sbjct: 126 LRLNNASIPTSLQATFPYIFAVSQYLQPGAFDLVGYIIYDVEGKPYQSVFYNGTIEVVES 185

Query: 186 SGFLSIETVFLVTLGIALLVILGLWIRGQIQQKLSKKPKRAASKVEVGTKTVDTSMDEWL 245
            G LS E+VFL+TLGI LL++LGLW   Q+ Q+L+KK K+  SKVEVGT++ + S+DEWL
Sbjct: 186 GGLLSGESVFLLTLGIGLLLLLGLWAYSQV-QRLTKKTKK-VSKVEVGTRSTEASLDEWL 245

Query: 246 QGTAYTRSGSSKSKKK 259
           +GT   ++ S K+K K
Sbjct: 246 EGTTLAKTSSGKTKNK 256

[Close]

BLAST of Sed0027417 vs. ExPASy Swiss-Prot
Match: Q54R45 (Translocon-associated protein subunit alpha OS=Dictyostelium discoideum OX=44689 GN=ssr1 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.7e-15
Identity = 59/193 (30.57%), Postives = 95/193 (49.22%), Query Frame = 0


Query: 69  IFPKNSARIVQAGEETELLAGVKNEGESSLNIIAIKASIHYTFDHRMLIQNLTGQVFHNA 128
           IFP N  +   AG   E+L G  N  + +LNI  I AS+++  D  + IQN T   F   
Sbjct: 44  IFPDNQDKNFAAGSVVEVLVGFTNNADKALNITHIFASLNHPQDFSVFIQNYTRGDF-GI 103

Query: 129 TVPPSTQASYPYAFAVSKFLQPGNFDLVGTIYYEIDQNAYQSIFYNGTIEVVEPSGFLSI 188
            V     A+  Y F  S++L+P  F L+ ++ Y+     +   F+N TI + E      +
Sbjct: 104 AVEKGHHATLAYRFVPSEYLEPREFGLLISLEYQDGAQNFTQTFFNSTINITEKETSFDM 163

Query: 189 ETVFLVTLGIALLVILGLWIRGQIQQKLSKKPKRAASKVEVGTKTVDTSMD--EWLQGTA 248
           ++ FL+ LG+  +  +G  + G++ +   +K  R  SKV      V+T  +  EWL GT+
Sbjct: 164 DSFFLILLGLGFVGGIGYIVYGKMPK---QKKVRTVSKVNKNAVRVETEDETAEWLSGTS 223

Query: 249 YTRSGSSKSKKKI 260
              S   KS +K+
Sbjct: 224 -AASSKVKSVQKV 231

[Close]

BLAST of Sed0027417 vs. ExPASy Swiss-Prot
Match: P43307 (Translocon-associated protein subunit alpha OS=Homo sapiens OX=9606 GN=SSR1 PE=1 SV=3)

HSP 1 Score: 80.9 bits (198), Expect = 2.4e-14
Identity = 63/217 (29.03%), Postives = 104/217 (47.93%), Query Frame = 0


Query: 29  DGETSEIVEEASDLGIVGEEDSQDFGEVNFGTAPGVDTVCIFPKNSARIVQAGEETELLA 88
           + E +++VE+  +  + GE ++          +P  DT  +F K       A    + L 
Sbjct: 58  EDEPTDLVEDKEEEDVSGEPEA----------SPSADTTILFVKGED--FPANNIVKFLV 117

Query: 89  GVKNEGESSLNIIAIKASIHYTFDHRMLIQNLTGQVFHNATVPPSTQASYPYAFAVSKFL 148
           G  N+G     + ++ AS  Y  D++  IQN T     N  VPP  QA++ Y+F  ++ +
Sbjct: 118 GFTNKGTEDFIVESLDASFRYPQDYQFYIQNFTALPL-NTVVPPQRQATFEYSFIPAEPM 177

Query: 149 QPGNFDLVGTI-YYEIDQNAYQSIFYNGTIEVVEPSGFLSIETVFLVTL--GIALLVILG 208
               F LV  + Y +++ N +Q   +N T+ V+E    L  ET+F+     G+ LLVI+G
Sbjct: 178 GGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMYMFLAGLGLLVIVG 237

Query: 209 LWIRGQIQQKLSKKPKRAASKVEVGTKTVDTSMDEWL 243
           L      Q   S+K KR   KVE+GT + +     W+
Sbjct: 238 LH-----QLLESRKRKRPIQKVEMGTSSQNDVDMSWI 256

[Close]

BLAST of Sed0027417 vs. ExPASy Swiss-Prot
Match: Q7TPJ0 (Translocon-associated protein subunit alpha OS=Rattus norvegicus OX=10116 GN=Ssr1 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.1e-14
Identity = 74/251 (29.48%), Postives = 114/251 (45.42%), Query Frame = 0


Query: 7   FFLALILFASPFLPVATCQS-NSDGETSE--IVEEASDLGIVGEEDSQDFGEVNF----- 66
           F  A++L   P   +A  Q    D ET E  I+E+  D   V E++  D  E        
Sbjct: 15  FPAAVLLRGGPGGSLAVAQDLTEDEETVEDPIIEDEDDEAEVEEDEPTDLAEEKEEEEDV 74

Query: 67  ----GTAPGVDTVCIFPKNSARIVQAGEETELLAGVKNEGESSLNIIAIKASIHYTFDHR 126
                 +P  DT  +F K       A    + L G  N+G     + ++ AS  Y  D++
Sbjct: 75  SSEPEASPSADTTILFVKGED--FPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQ 134

Query: 127 MLIQNLTGQVFHNATVPPSTQASYPYAFAVSKFLQPGNFDLVGTI-YYEIDQNAYQSIFY 186
             IQN T     N  VPP  QA++ Y+F  ++ +    F LV  + Y +++ N +Q   +
Sbjct: 135 FYIQNFTALPL-NTIVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVF 194

Query: 187 NGTIEVVEPSGFLSIETVFLVTL--GIALLVILGLWIRGQIQQKLSKKPKRAASKVEVGT 243
           N T+ V+E    L  ET+F+     G+ LLV++GL      Q   S+K KR   KVE+GT
Sbjct: 195 NQTVTVIEREDGLDGETIFMYMFLAGLGLLVVVGLH-----QLLESRKRKRPIQKVEMGT 254

[Close]

BLAST of Sed0027417 vs. ExPASy Swiss-Prot
Match: Q5R4X4 (Translocon-associated protein subunit alpha OS=Pongo abelii OX=9601 GN=SSR1 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.1e-14
Identity = 76/250 (30.40%), Postives = 114/250 (45.60%), Query Frame = 0


Query: 8   FLALILF-ASPFLPVATCQS-NSDGETSE--IVEEASDLGIVGEEDSQDFGEVNF----- 67
           F A +LF   P   +A  Q    D ET E  I+E+  D   V E++  D  E        
Sbjct: 15  FPATVLFRGGPRGSLAVAQDLTEDEETVEDSIIEDEDDEAEVEEDEPTDLVEDKEEEDVS 74

Query: 68  ---GTAPGVDTVCIFPKNSARIVQAGEETELLAGVKNEGESSLNIIAIKASIHYTFDHRM 127
                +P  DT  +F K       A    + L G  N+G     + ++ AS  Y  D++ 
Sbjct: 75  GEPEASPSADTTILFVKGED--FPANNIVKFLVGFTNKGTEDFIVESLDASFRYPQDYQF 134

Query: 128 LIQNLTGQVFHNATVPPSTQASYPYAFAVSKFLQPGNFDLVGTI-YYEIDQNAYQSIFYN 187
            IQN T     N  VPP  QA++ Y+F  ++ +    F LV  + Y +++ N +Q   +N
Sbjct: 135 YIQNFTALPL-NTVVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFN 194

Query: 188 GTIEVVEPSGFLSIETVFLVTL--GIALLVILGLWIRGQIQQKLSKKPKRAASKVEVGTK 243
            T+ V+E    L  ET+F+     G+ LLVI+GL      Q   S+K KR   KVE+GT 
Sbjct: 195 QTVTVIEREDGLDGETIFMYMFLAGLGLLVIVGLH-----QLLESRKRKRPVQKVEMGTS 254

[Close]

BLAST of Sed0027417 vs. ExPASy TrEMBL
Match: A0A6J1JIZ3 (Signal sequence receptor subunit alpha OS=Cucurbita maxima OX=3661 GN=LOC111486246 PE=3 SV=1)

HSP 1 Score: 446.0 bits (1146), Expect = 1.0e-121
Identity = 226/258 (87.60%), Postives = 245/258 (94.96%), Query Frame = 0


Query: 1   MNAFTVFFLALILFASPFLPVATCQSNSDGETSEIVEEASDLGIVGEEDSQDFGEVNFGT 60
           MN F VFFLA++L ASPFL VATCQS+S+GE S +VEEASDLG+VGEEDSQDFG+V FG+
Sbjct: 1   MNTFRVFFLAILLLASPFLRVATCQSDSEGEPSLVVEEASDLGVVGEEDSQDFGDVIFGS 60

Query: 61  APGVDTVCIFPKNSARIVQAGEETELLAGVKNEGESSLNIIAIKASIHYTFDHRMLIQNL 120
           APGV+TVC+FPKNSARIVQAG ETELLAGVKN+GESSLNIIAIKAS+HYTFDHR+LIQNL
Sbjct: 61  APGVNTVCVFPKNSARIVQAGAETELLAGVKNDGESSLNIIAIKASVHYTFDHRVLIQNL 120

Query: 121 TGQVFHNATVPPSTQASYPYAFAVSKFLQPGNFDLVGTIYYEIDQNAYQSIFYNGTIEVV 180
           TGQVFHNATVPPSTQASYPYAFAVSKFLQPGNFDLVGTIYYEIDQNAYQSIFYNGTIEV+
Sbjct: 121 TGQVFHNATVPPSTQASYPYAFAVSKFLQPGNFDLVGTIYYEIDQNAYQSIFYNGTIEVI 180

Query: 181 EPSGFLSIETVFLVTLGIALLVILGLWIRGQIQQKLSKKPKRAASKVEVGTKTVDTSMDE 240
           E SGF+SIETVFLVTLGIALLV+LGLWI G +QQKLSKKPKRAASKVEVGTKTVD+SMDE
Sbjct: 181 EASGFISIETVFLVTLGIALLVMLGLWIHGLVQQKLSKKPKRAASKVEVGTKTVDSSMDE 240

Query: 241 WLQGTAYTRSGSSKSKKK 259
           WLQGTAYT+S SSK KKK
Sbjct: 241 WLQGTAYTQSASSKLKKK 258

[Close]

BLAST of Sed0027417 vs. ExPASy TrEMBL
Match: A0A6J1GKP1 (Signal sequence receptor subunit alpha OS=Cucurbita moschata OX=3662 GN=LOC111455149 PE=3 SV=1)

HSP 1 Score: 442.2 bits (1136), Expect = 1.5e-120
Identity = 225/258 (87.21%), Postives = 242/258 (93.80%), Query Frame = 0


Query: 1   MNAFTVFFLALILFASPFLPVATCQSNSDGETSEIVEEASDLGIVGEEDSQDFGEVNFGT 60
           M  F VFFLAL+L ASPFL  ATCQS+SD E+SE+VEEASDLG+VGEEDSQDFGEVNFG 
Sbjct: 1   MKTFRVFFLALLLLASPFLQAATCQSDSDVESSEVVEEASDLGVVGEEDSQDFGEVNFGP 60

Query: 61  APGVDTVCIFPKNSARIVQAGEETELLAGVKNEGESSLNIIAIKASIHYTFDHRMLIQNL 120
           APGVDTVC+FPKNSARIV AGEETELLAGVKN+GESSLN+IAIKAS+HYTFDHRMLIQNL
Sbjct: 61  APGVDTVCVFPKNSARIVPAGEETELLAGVKNDGESSLNVIAIKASVHYTFDHRMLIQNL 120

Query: 121 TGQVFHNATVPPSTQASYPYAFAVSKFLQPGNFDLVGTIYYEIDQNAYQSIFYNGTIEVV 180
           TGQVFHNATVPPSTQASYPY FAVSKFLQPGNFDLVGTI+YEIDQ AYQS+F+NGTIEVV
Sbjct: 121 TGQVFHNATVPPSTQASYPYIFAVSKFLQPGNFDLVGTIFYEIDQTAYQSVFFNGTIEVV 180

Query: 181 EPSGFLSIETVFLVTLGIALLVILGLWIRGQIQQKLSKKPKRAASKVEVGTKTVDTSMDE 240
           E SG +S+ETVFLVTLGIALLV+LGLWI GQIQQKLSKKPKR ASKVEVGTKT+DTSMDE
Sbjct: 181 EASGLISMETVFLVTLGIALLVLLGLWIHGQIQQKLSKKPKRVASKVEVGTKTIDTSMDE 240

Query: 241 WLQGTAYTRSGSSKSKKK 259
           WLQGTA+TRS SSKSKKK
Sbjct: 241 WLQGTAFTRS-SSKSKKK 257

[Close]

BLAST of Sed0027417 vs. ExPASy TrEMBL
Match: A0A6J1I2T7 (Signal sequence receptor subunit alpha OS=Cucurbita maxima OX=3661 GN=LOC111468485 PE=3 SV=1)

HSP 1 Score: 440.7 bits (1132), Expect = 4.4e-120
Identity = 226/258 (87.60%), Postives = 241/258 (93.41%), Query Frame = 0


Query: 1   MNAFTVFFLALILFASPFLPVATCQSNSDGETSEIVEEASDLGIVGEEDSQDFGEVNFGT 60
           M  F VFFLAL+L ASPFL  AT QS+SDGE+SE VEEASDLG+VGEEDSQDFGEVNFG 
Sbjct: 1   MKTFRVFFLALLLLASPFLQAATSQSDSDGESSEAVEEASDLGVVGEEDSQDFGEVNFGP 60

Query: 61  APGVDTVCIFPKNSARIVQAGEETELLAGVKNEGESSLNIIAIKASIHYTFDHRMLIQNL 120
           APGVDTVC+FPKNSARIV AGEETELLAGVKN+GESSLNIIAIKAS+HYTFDHRMLIQNL
Sbjct: 61  APGVDTVCVFPKNSARIVPAGEETELLAGVKNDGESSLNIIAIKASVHYTFDHRMLIQNL 120

Query: 121 TGQVFHNATVPPSTQASYPYAFAVSKFLQPGNFDLVGTIYYEIDQNAYQSIFYNGTIEVV 180
           TGQVFHNATVPPSTQASYPY FAVSKFLQPGNFDLVGTI+YEIDQ AYQS+F+NGTIEVV
Sbjct: 121 TGQVFHNATVPPSTQASYPYIFAVSKFLQPGNFDLVGTIFYEIDQTAYQSVFFNGTIEVV 180

Query: 181 EPSGFLSIETVFLVTLGIALLVILGLWIRGQIQQKLSKKPKRAASKVEVGTKTVDTSMDE 240
           E SG +S+ETVFLVTLGIALLV+LGLWI GQIQQKLSKKPKR ASKVEVGTKT+DTSMDE
Sbjct: 181 EASGLISMETVFLVTLGIALLVLLGLWIHGQIQQKLSKKPKRVASKVEVGTKTIDTSMDE 240

Query: 241 WLQGTAYTRSGSSKSKKK 259
           WLQGTA+TRS SSKSKKK
Sbjct: 241 WLQGTAFTRS-SSKSKKK 257

[Close]

BLAST of Sed0027417 vs. ExPASy TrEMBL
Match: A0A5D3CLZ0 (Signal sequence receptor subunit alpha OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00850 PE=3 SV=1)

HSP 1 Score: 438.7 bits (1127), Expect = 1.7e-119
Identity = 223/258 (86.43%), Postives = 240/258 (93.02%), Query Frame = 0


Query: 1   MNAFTVFFLALILFASPFLPVATCQSNSDGETSEIVEEASDLGIVGEEDSQDFGEVNFGT 60
           MN F VFFLAL+L ASPFL  ATCQ++SD E SE VEE SDLGIVG+EDSQDFGEVNFG 
Sbjct: 1   MNTFRVFFLALLLLASPFLKAATCQADSDVEASEAVEEVSDLGIVGDEDSQDFGEVNFGP 60

Query: 61  APGVDTVCIFPKNSARIVQAGEETELLAGVKNEGESSLNIIAIKASIHYTFDHRMLIQNL 120
           APGVDTVC+FPKNSARIV AGEET+LLAGVKN+GESSLNIIAIKASIHYTFDHRMLIQNL
Sbjct: 61  APGVDTVCVFPKNSARIVPAGEETQLLAGVKNDGESSLNIIAIKASIHYTFDHRMLIQNL 120

Query: 121 TGQVFHNATVPPSTQASYPYAFAVSKFLQPGNFDLVGTIYYEIDQNAYQSIFYNGTIEVV 180
           TGQVFHNATVPPS QASYPY FAVSK+LQPGNFDLVGTI+YEIDQNAYQSIFYNGTIEVV
Sbjct: 121 TGQVFHNATVPPSAQASYPYIFAVSKYLQPGNFDLVGTIFYEIDQNAYQSIFYNGTIEVV 180

Query: 181 EPSGFLSIETVFLVTLGIALLVILGLWIRGQIQQKLSKKPKRAASKVEVGTKTVDTSMDE 240
           E SG +S+E+VFLV+LGIALLV+L LWI GQIQQKLSKKPKRAASKVEVGTKT+DTSMDE
Sbjct: 181 EASGIISMESVFLVSLGIALLVLLVLWIHGQIQQKLSKKPKRAASKVEVGTKTIDTSMDE 240

Query: 241 WLQGTAYTRSGSSKSKKK 259
           WLQGTAYT+SGS+K KKK
Sbjct: 241 WLQGTAYTKSGSNKLKKK 258

[Close]

BLAST of Sed0027417 vs. ExPASy TrEMBL
Match: A0A1S3BIP9 (Signal sequence receptor subunit alpha OS=Cucumis melo OX=3656 GN=LOC103490305 PE=3 SV=1)

HSP 1 Score: 437.6 bits (1124), Expect = 3.7e-119
Identity = 222/258 (86.05%), Postives = 240/258 (93.02%), Query Frame = 0


Query: 1   MNAFTVFFLALILFASPFLPVATCQSNSDGETSEIVEEASDLGIVGEEDSQDFGEVNFGT 60
           MN F VFFLAL+L ASPFL  ATCQ++SD E SE VEE SDLGIVG+EDSQDFGEVNFG 
Sbjct: 1   MNTFRVFFLALLLLASPFLKAATCQADSDVEASEAVEEVSDLGIVGDEDSQDFGEVNFGP 60

Query: 61  APGVDTVCIFPKNSARIVQAGEETELLAGVKNEGESSLNIIAIKASIHYTFDHRMLIQNL 120
           APGVDTVC+FPKNSARIV AGEET+LLAGVKN+GESSLNIIAIKASIHYTFDHR+LIQNL
Sbjct: 61  APGVDTVCVFPKNSARIVPAGEETQLLAGVKNDGESSLNIIAIKASIHYTFDHRLLIQNL 120

Query: 121 TGQVFHNATVPPSTQASYPYAFAVSKFLQPGNFDLVGTIYYEIDQNAYQSIFYNGTIEVV 180
           TGQVFHNATVPPS QASYPY FAVSK+LQPGNFDLVGTI+YEIDQNAYQSIFYNGTIEVV
Sbjct: 121 TGQVFHNATVPPSAQASYPYIFAVSKYLQPGNFDLVGTIFYEIDQNAYQSIFYNGTIEVV 180

Query: 181 EPSGFLSIETVFLVTLGIALLVILGLWIRGQIQQKLSKKPKRAASKVEVGTKTVDTSMDE 240
           E SG +S+E+VFLV+LGIALLV+L LWI GQIQQKLSKKPKRAASKVEVGTKT+DTSMDE
Sbjct: 181 EASGIISMESVFLVSLGIALLVLLVLWIHGQIQQKLSKKPKRAASKVEVGTKTIDTSMDE 240

Query: 241 WLQGTAYTRSGSSKSKKK 259
           WLQGTAYT+SGS+K KKK
Sbjct: 241 WLQGTAYTKSGSNKLKKK 258

[Close]

BLAST of Sed0027417 vs. TAIR 10
Match: AT2G21160.1 (Translocon-associated protein (TRAP), alpha subunit )

HSP 1 Score: 265.4 bits (677), Expect = 4.8e-71
Identity = 138/256 (53.91%), Postives = 193/256 (75.39%), Query Frame = 0


Query: 6   VFFLALILFASPFLPVATCQSNSDGETS---EIVEEASDLGIVGEEDSQDFGEVNFGTAP 65
           V FLAL+L ASP L VA CQS+++  +S   ++V E +D  +  EED  D  ++N  + P
Sbjct: 6   VLFLALLLLASPLLQVARCQSDAEDHSSLVDDVVGENTDDAV--EEDDHDL-DMNLSSFP 65

Query: 66  GVDTVCIFPKNSARIVQAGEETELLAGVKNEGESSLNIIAIKASIHYTFDHRMLIQNLTG 125
           GV+TVC+FPKNSA++V AGEETELL G+KNEG++ + ++ I+AS+H  +DH++L+QNLT 
Sbjct: 66  GVETVCVFPKNSAKLVPAGEETELLVGLKNEGKTRVGVMGIRASVHLPYDHKLLVQNLTM 125

Query: 126 QVFHNATVPPSTQASYPYAFAVSKFLQPGNFDLVGTIYYEIDQNAYQSIFYNGTIEVVEP 185
              +NA++P S QA++PY FAVS++LQPG FDLVG I Y+++   YQS+FYNGTIEVVE 
Sbjct: 126 LRLNNASIPTSLQATFPYIFAVSQYLQPGAFDLVGYIIYDVEGKPYQSVFYNGTIEVVES 185

Query: 186 SGFLSIETVFLVTLGIALLVILGLWIRGQIQQKLSKKPKRAASKVEVGTKTVDTSMDEWL 245
            G LS E+VFL+TLGI LL++LGLW   Q+ Q+L+KK K+  SKVEVGT++ + S+DEWL
Sbjct: 186 GGLLSGESVFLLTLGIGLLLLLGLWAYSQV-QRLTKKTKK-VSKVEVGTRSTEASLDEWL 245

Query: 246 QGTAYTRSGSSKSKKK 259
           +GT   ++ S K+K K
Sbjct: 246 EGTTLAKTSSGKTKNK 256

[Close]

BLAST of Sed0027417 vs. TAIR 10
Match: AT2G16595.1 (Translocon-associated protein (TRAP), alpha subunit )

HSP 1 Score: 240.7 bits (613), Expect = 1.3e-63
Identity = 137/256 (53.52%), Postives = 182/256 (71.09%), Query Frame = 0


Query: 3   AFTVFFLALILFASPFLPVATCQSNSDGETSEIVEEASDLGIVGEEDSQDFGEVNFGTAP 62
           +F + F A +L  SPFL VA CQS+S+    E+    SD+G   E D+++   +   +AP
Sbjct: 4   SFRLLFFAFLLLVSPFLKVALCQSDSEDSGFEV----SDVG-EEESDAEEVFGLELTSAP 63

Query: 63  GVDTVCIFPKNSARIVQAGEETELLAGVKNEGESSLNIIAIKASIHYTFDHRMLIQNLTG 122
           G++T+C+FPKNSA+I++AG ETELL G+KN+G+S+++I+A+K S+H  FD    +QNLT 
Sbjct: 64  GIETLCVFPKNSAKIIKAGVETELLVGMKNDGQSNVDIVAVKGSLHLPFDQN-AVQNLTA 123

Query: 123 QVFHNATVPPSTQASYPYAFAVSKFLQPGNFDLVGTIYYEIDQNAYQSIFYNGTIEVVEP 182
             F NA+VP S QA+ PYAFAVSKFLQ G FD VGTI YEID   YQSIFYNGTIEVVE 
Sbjct: 124 LSFSNASVPTSAQATLPYAFAVSKFLQAGAFDFVGTIIYEIDGKPYQSIFYNGTIEVVED 183

Query: 183 SGFLSIETVFLVTLGIALLVILGLWIRGQIQQKLSKKPKRAASKVEVGTKTVDTSMDEWL 242
                +E+VFL  L I ++  L ++I+  + + ++KK KR A KVEVGT T D S DEWL
Sbjct: 184 GPLFRMESVFLSGLLIFVIAFLAIYIQ-NVLKHMTKKTKR-APKVEVGTATKDASHDEWL 243

Query: 243 QGTAYTRSGSSKSKKK 259
           +GT+YT+S SSKSKKK
Sbjct: 244 EGTSYTQS-SSKSKKK 250

[Close]

BLAST of Sed0027417 vs. TAIR 10
Match: AT2G21160.2 (Translocon-associated protein (TRAP), alpha subunit )

HSP 1 Score: 196.8 bits (499), Expect = 2.1e-50
Identity = 99/184 (53.80%), Postives = 138/184 (75.00%), Query Frame = 0


Query: 6   VFFLALILFASPFLPVATCQSNSDGETS---EIVEEASDLGIVGEEDSQDFGEVNFGTAP 65
           V FLAL+L ASP L VA CQS+++  +S   ++V E +D  +  EED  D  ++N  + P
Sbjct: 6   VLFLALLLLASPLLQVARCQSDAEDHSSLVDDVVGENTDDAV--EEDDHDL-DMNLSSFP 65

Query: 66  GVDTVCIFPKNSARIVQAGEETELLAGVKNEGESSLNIIAIKASIHYTFDHRMLIQNLTG 125
           GV+TVC+FPKNSA++V AGEETELL G+KNEG++ + ++ I+AS+H  +DH++L+QNLT 
Sbjct: 66  GVETVCVFPKNSAKLVPAGEETELLVGLKNEGKTRVGVMGIRASVHLPYDHKLLVQNLTM 125

Query: 126 QVFHNATVPPSTQASYPYAFAVSKFLQPGNFDLVGTIYYEIDQNAYQSIFYNGTIEVVEP 185
              +NA++P S QA++PY FAVS++LQPG FDLVG I Y+++   YQS+FYNGTIEVVE 
Sbjct: 126 LRLNNASIPTSLQATFPYIFAVSQYLQPGAFDLVGYIIYDVEGKPYQSVFYNGTIEVVES 185

Query: 186 SGFL 187
            G L
Sbjct: 186 GGNL 186

The following BLAST results are available for this feature:

BLAST of Sed0027417 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023529772.1	1.9e-122	87.60	translocon-associated protein subunit alpha-like [Cucurbita pepo subsp. pepo]	[more]
XP_038886848.1	4.3e-122	89.15	translocon-associated protein subunit alpha-like [Benincasa hispida]	[more]
XP_022989061.1	2.1e-121	87.60	translocon-associated protein subunit alpha-like [Cucurbita maxima]	[more]
KAG6572098.1	8.2e-121	87.60	Translocon-associated protein subunit alpha, partial [Cucurbita argyrosperma sub...	[more]
XP_023553718.1	3.1e-120	87.60	translocon-associated protein subunit alpha-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0027417 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P45434	6.8e-70	53.91	Translocon-associated protein subunit alpha OS=Arabidopsis thaliana OX=3702 GN=A...	[more]
Q54R45	3.7e-15	30.57	Translocon-associated protein subunit alpha OS=Dictyostelium discoideum OX=44689...	[more]
P43307	2.4e-14	29.03	Translocon-associated protein subunit alpha OS=Homo sapiens OX=9606 GN=SSR1 PE=1...	[more]
Q7TPJ0	3.1e-14	29.48	Translocon-associated protein subunit alpha OS=Rattus norvegicus OX=10116 GN=Ssr...	[more]
Q5R4X4	4.1e-14	30.40	Translocon-associated protein subunit alpha OS=Pongo abelii OX=9601 GN=SSR1 PE=2...	[more]

BLAST of Sed0027417 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JIZ3	1.0e-121	87.60	Signal sequence receptor subunit alpha OS=Cucurbita maxima OX=3661 GN=LOC1114862...	[more]
A0A6J1GKP1	1.5e-120	87.21	Signal sequence receptor subunit alpha OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A6J1I2T7	4.4e-120	87.60	Signal sequence receptor subunit alpha OS=Cucurbita maxima OX=3661 GN=LOC1114684...	[more]
A0A5D3CLZ0	1.7e-119	86.43	Signal sequence receptor subunit alpha OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3BIP9	3.7e-119	86.05	Signal sequence receptor subunit alpha OS=Cucumis melo OX=3656 GN=LOC103490305 P...	[more]

BLAST of Sed0027417 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21160.1	4.8e-71	53.91	Translocon-associated protein (TRAP), alpha subunit	[more]
AT2G16595.1	1.3e-63	53.52	Translocon-associated protein (TRAP), alpha subunit	[more]
AT2G21160.2	2.1e-50	53.80	Translocon-associated protein (TRAP), alpha subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005595	Translocon-associated protein (TRAP), alpha subunit	PFAM	PF03896	TRAP_alpha	coord: 29..242 e-value: 7.5E-29 score: 100.8
None	No IPR available	PANTHER	PTHR12924:SF5	SUBFAMILY NOT NAMED	coord: 1..258
None	No IPR available	PANTHER	PTHR12924	TRANSLOCON-ASSOCIATED PROTEIN, ALPHA SUBUNIT	coord: 1..258

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0027417.1	Sed0027417.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane