Sed0027411 (gene) Chayote v1

Overview


Name	Sed0027411
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Glycine-rich RNA-binding family protein
Location	LG03: 3800139 .. 3804501 (-)
RNA-Seq Expression	Sed0027411
Synteny	Sed0027411

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGCAGTCTAAAAGGTGAAAACCCTTCACCCTGTGGAACTCATCGGTTCATTTCAGGCTACGAAGGTGAGTTTTAATCACTTCTTCTCTTTTCGCAACTCTTGATTTTTTGTTATTGTTGAATCGGAATTGAGTTTTCGGTGTTCTGCAGGAATTGTATCTGATCCATAGGCGAAATTGTAATGGCTGGGAAGGACGAGTATCGAATATTTGTTGGAGGGCTCTCATCGAGCGTCTCCGAGCGTCAGCTCGAGAGCGCTTTCAGCCGCTATGGCAAAATTCTTGAAACTCAGGTAACTTTCGCATTTATTTCTGTTTTCCGGTTGATAGGTTTTCTTCTGAAGAAAAAACTATGAATCTGTCGAGGACGTTGTTTGATTTATATTCCTCTAAAGCCCATCGAGCGTTTTTATGATTGAAATTACCAGATGTGATTTGATGACGTTCCTCGTAGGTTGTGAATTTTCCTTTTCCACAATGCGCGTTAGTGGTATTCTGTAATTTGCATAGATGACCCTTTGGTGTAATTACTTCTAGGAGTAATTTCTTTAGTTTGGAGATTCTTTTGGTAGGAAGTGCTGTATTTTAATGCCCATGGATTATTCTTCCATTATTTTTCTCAATGAAAGTTCAGTATTTCATCTACAAACAAATTTAGTATATTTACGGGGTTGTAATGTACGAATTAATTTTTTTGGGTCGAAGAGTAAGTTGGTCAGTACACTATATAAAAATATCTGTATTTTATCTTACTTTTCTTATTTGTTTATTATTTTCTAGTATCCAAGGGGTGGCACAGTGGTTGAAGACTTGGGTTTTGAATGTATGCTCCTTCAAAGTTCCAGGTTCGAGACTCACCTGTGACATTATTCATTCGATGTCGCTAGTGTCTGTCTCAGGGACGGGCATGGTTACCCTTGTTTAAAAAAAAAAAATCTTATCATGATATATATATTTTTTTAATTTGAAAATGTGCACGTGGATGTTAGTTGAACCATCAGGATGTATTGATTCATTTAGGCTATATGTATCAGAATACTTCAGATTAGTTTTACTTGCTAGATTTTAGTAAACAGTTTGTTTCAGGCTGAGATTCTTACCATCCTTTGCTCTTTTGCTATGTAGAATATGGTCCAGGGAAATCCTGTCCATCCGTATACATATATTGGAAGAAGTTGTTTGGAAACTGATAGTATTTCGTAAGAAAAGTGTTGTCAATATTGTTTCAGAAATTATATATGATCGATGCCTCCTCTTAGGTTATCGGGTGAGATGTTTCTTCCGTGGAGTTGATTGTGTGGTTGAGAAATTATAGGTAGTGCAATTTGTGAAAATTGATCAAGACTTCTCACTTCCAAAAAAAAAAAATTTGTGTTCCACATCCAGTTTGCTGAATTTGTTGTTAGTACACCTCCATTCCTTGAAATCCAGAGATTGAATTTGGGGTATAAGTTGTTGGATTGAGAAGATGCTTCTAAAACCTTAGTATTCAGTTTTTTGTTGATGTACTTCGTGCTTCCTATTTTATAAGATTTTGCAAAGTATTCCATACTTAATGTCTGCTCTTTCTAGTTTCGAAGAGAATTCTTGACATTTTACTTGATCTGTATTCCCTAATGCATCTACAGACTTTGTTTTTGTTCATGCTCAATCAGTGTAAATAGTGAGTACGTGCATTCAGAAGGAATTTGTTATCATCTGCCTTGATGTCGGTATGGTGTAAGGTTCTTGCTTTCCATTTGTGTGTATTTTGGAACTTGAACTTATTAGGAATTACTGTTCTAGACTTCTAGTGCTTCCGGACGTTCAGGGATTATTTTTGGTGTTTTGGCATGGAAGGGAAAGCTGTTGTCAAATATTACACGTTCCCTCCTAGTTATTTGATCATCAGAATCAGTTGTCCCTCGAGCAGGTCTCTTTTTCTTCCAGGGTGGTCTCTATTGATCGAACCCTTTCTCCCGGTTGTCGAGCCTGATCGATTCGACTCTTTTCTTAGCCTCCCGGCCTCTCACTTCGTTTTGTTCTTCTCTTCCTTTGCTTGAATGAAGACAGCCATTGACCCGTCTATCCCAAATGCCCACCAAACCAAATAATTGAGGGAAAATTTGAGGCTATTGTTATTTCAGTTCTACAACATTTTTTACGAAATCTGTAAACATGCTTACCATGACAAAAAGGGTTGATAAAACAACTATCACATCATTTGGTGTGAATTGAGGCAGTGCAGGGCCTCTATCGTTTGTCATTTTCCTGTTGTACACCAGTTTGCTTGGATATCTTGCTTCACTGTTAAATTATACTAAAATCAGTTTTAGTTGTCAGCATTGGCTTGTTCTGTTCTGTTTTAGAGGACAAGATTTCACAGTAAATTTAATTAAATTGTAGAGACATGACATCAAAATGCAGAAGAATCTGAATTAGGATTAGGTCTGCTGCCGTTGCCATGTGTTGGTTGCTCAGTGAATTATAAAGGACGAAGGGCAGTTGACAGCATAAAACTTAGAATTGCATCCAATGTGAGGAGAGTTTTTAATGCATTACTGTACTTTGTTTATTGTGGCATTGGATTGGGTGGTGGCTTAGCGCAGAGAGCATTAAGGCAAGCAATTATATTTCCCCAAGGTTTTTTCTTCTTGATTCAGTTTCTAGACTCTTGAGCGATGTATCTGGCTGGGTTACGAACAATGAATGTTGTCTGAGTGCTACAGTTATTAAGGCTACAAAGTGGTGTGATAATTTCAGTTACCAGTGGAATCATTGCCTTGGGCCGTCATCTCAGTGGAGTGGGATAGATTCTTTTTAACTCTTAGAGCTCAAGATTCTAATTTTATGATGGGAAATTTCCTAGATTGCACCCGAAGAGGTTTTGGGTAGTTGAGATGGATGATTCTATTTAAATGGTAGATTTGAAGTGTTGAAGACAACTTGTGTAACGATCTTCAAGTTGTTGGACACATTGCAGGCTTTGCTGGGAAATTCTTCCTAAGTATGTCATTCAAATTTTCTGCTTAAATGATTGCTTGGAAGGGAAAGTAAGTTGTCAGAATTTTTAATGGTTTTCTACCTATTCTATTCCTTGCATAACTATAAAACATTTCTGTTGTCTATGTCGAATTAAACAATGCAATACTGTAAATATTGTTTCCTGCGTAATAATGCTACTTCTTTGCATGAGCTTCTCTTGTGATGTTTATGTAGATCATGTTAGAACGAGATACAGGTCGTCCTCGAGGGTTTGGTTTCCTTACCTTCGCAGACCGTCGAGGGATGGATGATGCAATTAGAGAGATGCATGGGCATGAGCTTGGTGAGCGGACTATCACAGTTAATAAGGCTGAACCCAAGATGGAGGGAGATAATTCAGAGTCAGGCTTCAGGAGGGGAGGCTATTCATCTGGTGGTAGGGCTAGTTTTGGTAGAGGAGGAGATAGATCTGTTGGACAAGATGAATGCTTCAAGTGTGGTCGCCCGGGGCATTGGGCACGAGACTGCCCTTCAGCTGGTGGTGGTGTACGTGGTAGGGTTGGAGATTCATTTTCATTGCGATCTCGATTTGATAGTGATGGCCGTGGGGATCGTTTTGGAGAAGACCGTGACCGATATATAGATGATCGTTATGATTTAGGGCGAGATGGGGGGCGATATGGTGATAGAGATCGTTTCGATCGTAGAGATGACAAGTATGGAAGTCGAGACCGCTATTTTGATGACAGGTAGTTCTAATATCACCCATTTACTATCCTTCCAAAATCATATGATTTGATTGACAGCTTATTGGAGCATGTTTTGACAATTCCGTATCTCTGGGATCTTTTATGGAAACTCTTCAGGTACCCATCTGCTGGAGATCGTTTTGCAGGTGGTGGTGATAGGTACGATGTTAGTGATCGCAATCCTCAAAATGGCTATGCAAAAGACAGAGGCAGCTATGGTAGAGATATCGGTCCTAGGAGTGGCAGCGATAGGTATGGTAGCGGTGGTCCTGCCCGTTACGAGGGAAGGAGTCTCAGAGATAGGCCAGGCCCTTACGACCGCCCGAGCAGGGGAGGACGACCGTCATCCTATGAGCGCTATTGAAATTCAGATGTATGTTTTTTTGTTCGGAAATCGTTCTTTAAACTTGGGAAGACACTTGCAATTGAGCTTTTGATGCTACATCTGACCTTTTTTGGGATTTGATGTCTATCCAAAACTTCACTACTTTAAGAAATATTTTGTATTAGAAACTTGGTTTTTCACAAATTTCTAATATTCATAGGGTCCTTTACTTTCTTTGTTGGACAACGTAAGTTTGAGAACTTCCTTTTTCTCGAGTGTTCGAATTCCTAAATTAAATTCCATTATTCTATAGTTTCACAAATGTA

mRNA sequence

TTGCAGTCTAAAAGGTGAAAACCCTTCACCCTGTGGAACTCATCGGTTCATTTCAGGCTACGAAGGAATTGTATCTGATCCATAGGCGAAATTGTAATGGCTGGGAAGGACGAGTATCGAATATTTGTTGGAGGGCTCTCATCGAGCGTCTCCGAGCGTCAGCTCGAGAGCGCTTTCAGCCGCTATGGCAAAATTCTTGAAACTCAGATCATGTTAGAACGAGATACAGGTCGTCCTCGAGGGTTTGGTTTCCTTACCTTCGCAGACCGTCGAGGGATGGATGATGCAATTAGAGAGATGCATGGGCATGAGCTTGGTGAGCGGACTATCACAGTTAATAAGGCTGAACCCAAGATGGAGGGAGATAATTCAGAGTCAGGCTTCAGGAGGGGAGGCTATTCATCTGGTGGTAGGGCTAGTTTTGGTAGAGGAGGAGATAGATCTGTTGGACAAGATGAATGCTTCAAGTGTGGTCGCCCGGGGCATTGGGCACGAGACTGCCCTTCAGCTGGTGGTGGTGTACGTGGTAGGGTTGGAGATTCATTTTCATTGCGATCTCGATTTGATAGTGATGGCCGTGGGGATCGTTTTGGAGAAGACCGTGACCGATATATAGATGATCGTTATGATTTAGGGCGAGATGGGGGGCGATATGGTGATAGAGATCGTTTCGATCGTAGAGATGACAAGTATGGAAGTCGAGACCGCTATTTTGATGACAGGTACCCATCTGCTGGAGATCGTTTTGCAGGTGGTGGTGATAGGTACGATGTTAGTGATCGCAATCCTCAAAATGGCTATGCAAAAGACAGAGGCAGCTATGGTAGAGATATCGGTCCTAGGAGTGGCAGCGATAGGTATGGTAGCGGTGGTCCTGCCCGTTACGAGGGAAGGAGTCTCAGAGATAGGCCAGGCCCTTACGACCGCCCGAGCAGGGGAGGACGACCGTCATCCTATGAGCGCTATTGAAATTCAGATGTATGTTTTTTTGTTCGGAAATCGTTCTTTAAACTTGGGAAGACACTTGCAATTGAGCTTTTGATGCTACATCTGACCTTTTTTGGGATTTGATGTCTATCCAAAACTTCACTACTTTAAGAAATATTTTGTATTAGAAACTTGGTTTTTCACAAATTTCTAATATTCATAGGGTCCTTTACTTTCTTTGTTGGACAACGTAAGTTTGAGAACTTCCTTTTTCTCGAGTGTTCGAATTCCTAAATTAAATTCCATTATTCTATAGTTTCACAAATGTA

Coding sequence (CDS)

ATGGCTGGGAAGGACGAGTATCGAATATTTGTTGGAGGGCTCTCATCGAGCGTCTCCGAGCGTCAGCTCGAGAGCGCTTTCAGCCGCTATGGCAAAATTCTTGAAACTCAGATCATGTTAGAACGAGATACAGGTCGTCCTCGAGGGTTTGGTTTCCTTACCTTCGCAGACCGTCGAGGGATGGATGATGCAATTAGAGAGATGCATGGGCATGAGCTTGGTGAGCGGACTATCACAGTTAATAAGGCTGAACCCAAGATGGAGGGAGATAATTCAGAGTCAGGCTTCAGGAGGGGAGGCTATTCATCTGGTGGTAGGGCTAGTTTTGGTAGAGGAGGAGATAGATCTGTTGGACAAGATGAATGCTTCAAGTGTGGTCGCCCGGGGCATTGGGCACGAGACTGCCCTTCAGCTGGTGGTGGTGTACGTGGTAGGGTTGGAGATTCATTTTCATTGCGATCTCGATTTGATAGTGATGGCCGTGGGGATCGTTTTGGAGAAGACCGTGACCGATATATAGATGATCGTTATGATTTAGGGCGAGATGGGGGGCGATATGGTGATAGAGATCGTTTCGATCGTAGAGATGACAAGTATGGAAGTCGAGACCGCTATTTTGATGACAGGTACCCATCTGCTGGAGATCGTTTTGCAGGTGGTGGTGATAGGTACGATGTTAGTGATCGCAATCCTCAAAATGGCTATGCAAAAGACAGAGGCAGCTATGGTAGAGATATCGGTCCTAGGAGTGGCAGCGATAGGTATGGTAGCGGTGGTCCTGCCCGTTACGAGGGAAGGAGTCTCAGAGATAGGCCAGGCCCTTACGACCGCCCGAGCAGGGGAGGACGACCGTCATCCTATGAGCGCTATTGA

Protein sequence

MAGKDEYRIFVGGLSSSVSERQLESAFSRYGKILETQIMLERDTGRPRGFGFLTFADRRGMDDAIREMHGHELGERTITVNKAEPKMEGDNSESGFRRGGYSSGGRASFGRGGDRSVGQDECFKCGRPGHWARDCPSAGGGVRGRVGDSFSLRSRFDSDGRGDRFGEDRDRYIDDRYDLGRDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFAGGGDRYDVSDRNPQNGYAKDRGSYGRDIGPRSGSDRYGSGGPARYEGRSLRDRPGPYDRPSRGGRPSSYERY

Homology

[Close]

BLAST of Sed0027411 vs. NCBI nr
Match: KAG6602289.1 (Glycine-rich RNA-binding protein RZ1C, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 505.8 bits (1301), Expect = 2.6e-139
Identity = 258/291 (88.66%), Postives = 267/291 (91.75%), Query Frame = 0


Query: 1   MAGKDEYRIFVGGLSSSVSERQLESAFSRYGKILETQIMLERDTGRPRGFGFLTFADRRG 60
           MA KDEYRIFVGGLS +VSER+LE+AFSRYGKI+ETQIMLERDTGRPRGFGF+TFADRRG
Sbjct: 1   MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQIMLERDTGRPRGFGFITFADRRG 60

Query: 61  MDDAIREMHGHELGERTITVNKAEPKMEGDNSESGFRRGGYSSGGRASFGRGGDRSVGQD 120
           MDDAIREMHGHE GER I+VNKAEPKMEGD+ E GFR GGYSSGGRASFGRGGDRSVGQD
Sbjct: 61  MDDAIREMHGHEFGERIISVNKAEPKMEGDDREPGFRGGGYSSGGRASFGRGGDRSVGQD 120

Query: 121 ECFKCGRPGHWARDCPSAGGGVRGRVGDSFSLRSRFDSDGRGDRFGEDRDRYIDDRYDLG 180
           ECFKCGRPGHWARDCPSAGGG RGR   SFS RSRFD D RGDRFG DRDRY+DDRYD G
Sbjct: 121 ECFKCGRPGHWARDCPSAGGG-RGRGRGSFSSRSRFDGDSRGDRFGGDRDRYVDDRYDGG 180

Query: 181 RDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFAGGGDRYDVSDRNPQNGYAKDRG 240
           RDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFA GGDRYDVSDR PQNGY KDRG
Sbjct: 181 RDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFA-GGDRYDVSDRYPQNGYVKDRG 240

Query: 241 SYGRDIGPRSGSDRYGS-GGPARYEGRSLRDRPGPYDRPSRGGRPSSYERY 291
            Y RDIGPRSGSDRYG+ GGP RYEGRS RDRPGPYDRPSRGGRPSSYERY
Sbjct: 241 GYDRDIGPRSGSDRYGTGGGPGRYEGRSYRDRPGPYDRPSRGGRPSSYERY 289

[Close]

BLAST of Sed0027411 vs. NCBI nr
Match: XP_022990423.1 (glycine-rich RNA-binding protein RZ1C [Cucurbita maxima] >XP_022990424.1 glycine-rich RNA-binding protein RZ1C [Cucurbita maxima])

HSP 1 Score: 504.6 bits (1298), Expect = 5.7e-139
Identity = 257/291 (88.32%), Postives = 267/291 (91.75%), Query Frame = 0


Query: 1   MAGKDEYRIFVGGLSSSVSERQLESAFSRYGKILETQIMLERDTGRPRGFGFLTFADRRG 60
           MA KDEYRIFVGGLS +VSER+LE+AFSRYGKI+ETQIMLERDTGRPRGFGF+TFADRRG
Sbjct: 1   MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQIMLERDTGRPRGFGFITFADRRG 60

Query: 61  MDDAIREMHGHELGERTITVNKAEPKMEGDNSESGFRRGGYSSGGRASFGRGGDRSVGQD 120
           MDDAIREMHGHE GER I+VNKAEPKMEGD+ E GFR GGYSSGGRASFGRGGDRSVGQD
Sbjct: 61  MDDAIREMHGHEFGERIISVNKAEPKMEGDDREPGFRGGGYSSGGRASFGRGGDRSVGQD 120

Query: 121 ECFKCGRPGHWARDCPSAGGGVRGRVGDSFSLRSRFDSDGRGDRFGEDRDRYIDDRYDLG 180
           ECFKCGRPGHWARDCPSAGGG RGR   SFS RSRFD D RGDRFG DRDRY+DDRYD G
Sbjct: 121 ECFKCGRPGHWARDCPSAGGG-RGRGRGSFSSRSRFDGDSRGDRFGGDRDRYVDDRYDGG 180

Query: 181 RDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFAGGGDRYDVSDRNPQNGYAKDRG 240
           RDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFA GGDRYDVSDR PQNGY KDRG
Sbjct: 181 RDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFA-GGDRYDVSDRYPQNGYVKDRG 240

Query: 241 SYGRDIGPRSGSDRYGS-GGPARYEGRSLRDRPGPYDRPSRGGRPSSYERY 291
            Y RDIGPRSGSDRYG+ GGP RYEGR+ RDRPGPYDRPSRGGRPSSYERY
Sbjct: 241 GYDRDIGPRSGSDRYGTGGGPGRYEGRNYRDRPGPYDRPSRGGRPSSYERY 289

[Close]

BLAST of Sed0027411 vs. NCBI nr
Match: XP_022961758.1 (glycine-rich RNA-binding protein RZ1C-like [Cucurbita moschata] >XP_022961766.1 glycine-rich RNA-binding protein RZ1C-like [Cucurbita moschata])

HSP 1 Score: 504.2 bits (1297), Expect = 7.4e-139
Identity = 257/291 (88.32%), Postives = 266/291 (91.41%), Query Frame = 0


Query: 1   MAGKDEYRIFVGGLSSSVSERQLESAFSRYGKILETQIMLERDTGRPRGFGFLTFADRRG 60
           MA KDEYRIFVGGLS +VSER+LE+AFSRYGKI+ETQIMLERDTGRPRGFGF+TFADRRG
Sbjct: 1   MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQIMLERDTGRPRGFGFITFADRRG 60

Query: 61  MDDAIREMHGHELGERTITVNKAEPKMEGDNSESGFRRGGYSSGGRASFGRGGDRSVGQD 120
           MDDAIREMHGHE GER I+VNKAEPKMEGD+ E GFR GGYSSGGRASFGRGGDRSVGQD
Sbjct: 61  MDDAIREMHGHEFGERIISVNKAEPKMEGDDREPGFRGGGYSSGGRASFGRGGDRSVGQD 120

Query: 121 ECFKCGRPGHWARDCPSAGGGVRGRVGDSFSLRSRFDSDGRGDRFGEDRDRYIDDRYDLG 180
           ECFKCGRPGHWARDCPSAGGG RGR   SFS RSRFD D RGDRFG DRDRY+DDRYD G
Sbjct: 121 ECFKCGRPGHWARDCPSAGGG-RGRGRGSFSSRSRFDGDSRGDRFGGDRDRYVDDRYDGG 180

Query: 181 RDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFAGGGDRYDVSDRNPQNGYAKDRG 240
           RDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRF  GGDRYDVSDR PQNGY KDRG
Sbjct: 181 RDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFT-GGDRYDVSDRYPQNGYVKDRG 240

Query: 241 SYGRDIGPRSGSDRYGS-GGPARYEGRSLRDRPGPYDRPSRGGRPSSYERY 291
            Y RDIGPRSGSDRYG+ GGP RYEGRS RDRPGPYDRPSRGGRPSSYERY
Sbjct: 241 GYDRDIGPRSGSDRYGTGGGPGRYEGRSYRDRPGPYDRPSRGGRPSSYERY 289

[Close]

BLAST of Sed0027411 vs. NCBI nr
Match: XP_023544240.1 (glycine-rich RNA-binding protein RZ1C [Cucurbita pepo subsp. pepo] >XP_023544248.1 glycine-rich RNA-binding protein RZ1C [Cucurbita pepo subsp. pepo])

HSP 1 Score: 501.1 bits (1289), Expect = 6.3e-138
Identity = 255/291 (87.63%), Postives = 266/291 (91.41%), Query Frame = 0


Query: 1   MAGKDEYRIFVGGLSSSVSERQLESAFSRYGKILETQIMLERDTGRPRGFGFLTFADRRG 60
           MA KDEYRIFVGGLS +VSER+LE+AFSRYGKI+ETQIMLERDTGRPRGFGF+TFADRRG
Sbjct: 1   MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQIMLERDTGRPRGFGFITFADRRG 60

Query: 61  MDDAIREMHGHELGERTITVNKAEPKMEGDNSESGFRRGGYSSGGRASFGRGGDRSVGQD 120
           MDDAIREMHGHE GER I+VNKAEPKMEGD+ E GFR GGYSSGGRASFGRGGDRSVGQD
Sbjct: 61  MDDAIREMHGHEFGERIISVNKAEPKMEGDDREPGFRGGGYSSGGRASFGRGGDRSVGQD 120

Query: 121 ECFKCGRPGHWARDCPSAGGGVRGRVGDSFSLRSRFDSDGRGDRFGEDRDRYIDDRYDLG 180
           ECFKCGRPGHWARDCPS GGG RGR   SFS RSRFD D RGDRFG DRDRY+DDRYD G
Sbjct: 121 ECFKCGRPGHWARDCPSTGGG-RGRGRGSFSSRSRFDGDSRGDRFGGDRDRYVDDRYDGG 180

Query: 181 RDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFAGGGDRYDVSDRNPQNGYAKDRG 240
           RDGGRYGDRDRFDRRDDKYGSRDRYF+DRYPSAGDRFA GGDRYDVSDR PQNGY K+RG
Sbjct: 181 RDGGRYGDRDRFDRRDDKYGSRDRYFEDRYPSAGDRFA-GGDRYDVSDRYPQNGYVKERG 240

Query: 241 SYGRDIGPRSGSDRYGS-GGPARYEGRSLRDRPGPYDRPSRGGRPSSYERY 291
            Y RDIGPRSGSDRYG+ GGP RYEGRS RDRPGPYDRPSRGGRPSSYERY
Sbjct: 241 GYDRDIGPRSGSDRYGTGGGPGRYEGRSYRDRPGPYDRPSRGGRPSSYERY 289

[Close]

BLAST of Sed0027411 vs. NCBI nr
Match: XP_022133790.1 (glycine-rich RNA-binding protein RZ1C-like isoform X1 [Momordica charantia])

HSP 1 Score: 498.4 bits (1282), Expect = 4.1e-137
Identity = 255/290 (87.93%), Postives = 262/290 (90.34%), Query Frame = 0


Query: 1   MAGKDEYRIFVGGLSSSVSERQLESAFSRYGKILETQIMLERDTGRPRGFGFLTFADRRG 60
           MAGKDEYRIFVGGLS ++SERQLE+AFSRYGKILETQIMLERDTGRPRGFGF+TFADRRG
Sbjct: 1   MAGKDEYRIFVGGLSWNISERQLENAFSRYGKILETQIMLERDTGRPRGFGFITFADRRG 60

Query: 61  MDDAIREMHGHELGERTITVNKAEPKMEGDNSESGFRRGGYSSGGRASFGRGGDRSVGQD 120
           MDDAIREMHG ELGERTI+VNKAEPKMEGD+ E GFR GGYSSGGR SFGRGGDRSVGQD
Sbjct: 61  MDDAIREMHGRELGERTISVNKAEPKMEGDDGEPGFRGGGYSSGGRPSFGRGGDRSVGQD 120

Query: 121 ECFKCGRPGHWARDCPSAGGGVRGRVGDSFSLRSRFDSDGRGDRFGEDRDRYIDDRYDLG 180
           ECFKCGRPGHWARDCPS GGG RGR   SFS RSRFDSD RGDRFG DRDRY+DDRY   
Sbjct: 121 ECFKCGRPGHWARDCPSVGGG-RGRGRGSFSSRSRFDSDSRGDRFGGDRDRYVDDRY--- 180

Query: 181 RDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFAGGGDRYDVSDRNPQNGYAKDRG 240
            DGGRYGDRD FDRRDDKYGSRDRYFDDRYPS GDRFA GGDRYDVSDR PQNGY KDRG
Sbjct: 181 -DGGRYGDRDHFDRRDDKYGSRDRYFDDRYPSGGDRFA-GGDRYDVSDRYPQNGYVKDRG 240

Query: 241 SYGRDIGPRSGSDRYGSGGPARYEGRSLRDRPGPYDRPSRGGRPSSYERY 291
            Y RDIGPRSGSDRYGSGGP RYEGRS RDR GPYDRPSRGGRPSSYERY
Sbjct: 241 GYNRDIGPRSGSDRYGSGGPGRYEGRSYRDRAGPYDRPSRGGRPSSYERY 284

[Close]

BLAST of Sed0027411 vs. ExPASy Swiss-Prot
Match: Q8RWN5 (Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana OX=3702 GN=RZ1C PE=1 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.6e-75
Identity = 180/307 (58.63%), Postives = 207/307 (67.43%), Query Frame = 0


Query: 1   MAGKDEYRIFVGGLSSSVSERQLESAFSRYGKILETQIMLERDTGRPRGFGFLTFADRRG 60
           MA K+  RIFVGGLS  V++R LE AFSR+G IL+ QIMLERDTGR RGFGF+TFADRR 
Sbjct: 1   MAAKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRA 60

Query: 61  MDDAIREMHGHELGERTITVNKAEPKMEGDNSES----GFRRGGYSSGGRASFGRGGDRS 120
           MD++IREMHG + G+R I+VN+AEPK+  D+ ES    G R  GYS  G+ SFG GG   
Sbjct: 61  MDESIREMHGRDFGDRVISVNRAEPKLGRDDGESHGSRGGRDSGYSIAGKGSFGGGGGGG 120

Query: 121 --VGQDECFKCGRPGHWARDCPSAGGGVRGRVGDSFSLRSRF-DSDGRGDRFGE-----D 180
             VG+DECFKCGR GHWARDCPSAGGG  G VG   S  S +  SDGR DR+ +     D
Sbjct: 121 GRVGEDECFKCGRVGHWARDCPSAGGGRGGPVGGFSSRASAYGGSDGRVDRYADRDRYVD 180

Query: 181 RDRYIDDRYDLGRDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFAGGGDRYD-VS 240
           R+RYIDDRYD      RYG RDRFD R + Y  RDRY  DRY +  DRFA GGDRY   S
Sbjct: 181 RERYIDDRYD---GAARYGARDRFDSR-EAYIPRDRYASDRYAAPADRFA-GGDRYSRGS 240

Query: 241 DRNPQNGYAKDRGSYGRDIGPRSGSDRYG---SGGPAR---YEGRSLRDRPG-PYDRPSR 288
           DR P   Y K R S+ RDI P +GSDRYG   +GGP R    EGR  R R G PY+RPSR
Sbjct: 241 DRYPPGSYDKAR-SFERDIAPSAGSDRYGGGRAGGPIRGGGEEGRGFRSRAGAPYERPSR 300

[Close]

BLAST of Sed0027411 vs. ExPASy Swiss-Prot
Match: O22703 (Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE=2 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 1.4e-71
Identity = 168/301 (55.81%), Postives = 194/301 (64.45%), Query Frame = 0


Query: 3   GKDEYRIFVGGLSSSVSERQLESAFSRYGKILETQIMLERDTGRPRGFGFLTFADRRGMD 62
           G  E RIFVGGLS  V+ERQLES F RYGKI E QIM+ RDTGRPRGFGF+TF DRRG D
Sbjct: 8   GNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGAD 67

Query: 63  DAIREMHGHELGERTITVNKAEPKMEGDNSESGFRRGGYSSGGRASFGRGGDRSVGQDEC 122
           DAI+ MHG ELG + I+VNKAEPK+ G++ +   + GGYSS G+ +          +DEC
Sbjct: 68  DAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGT----------EDEC 127

Query: 123 FKCGRPGHWARDCPSAGGGVRGRVGDSFSLRSRF-DSDGRGDRFGE-----------DRD 182
           FKC RPGHWARDCPS G   R R     ++RSR  D DG  DR+G+           + D
Sbjct: 128 FKCRRPGHWARDCPSTGDD-RERFRVPLAMRSRIGDIDGHRDRYGDRDLEREREREREFD 187

Query: 183 RYIDDRYDLGRDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFAGGGDRYDVSDRN 242
           RY+D R D  RDGGRY  RDRFD   DKY  RD Y  +RY   GDRF    DRY + + +
Sbjct: 188 RYMDGRRD--RDGGRYSYRDRFD-SGDKYEPRDHYPFERYAPPGDRFV--SDRYGMPEHH 247

Query: 243 PQNGYAKDRGSYGRDIGPRSGSDRYGSGGPARYEGRSLRDRPGPYDRPSR-GGRPSSYER 291
            +N Y     SY RD   R  SDRYG  GP R EGR  R RPGPYDRPSR GGRPSSYER
Sbjct: 248 LENEYRGRERSYDRDRYARDTSDRYGDMGPIRDEGRPYRSRPGPYDRPSRPGGRPSSYER 292

[Close]

BLAST of Sed0027411 vs. ExPASy Swiss-Prot
Match: Q9LIN3 (Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana OX=3702 GN=RZ1A PE=1 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.0e-33
Identity = 114/292 (39.04%), Postives = 151/292 (51.71%), Query Frame = 0


Query: 1   MAGKDEYRIFVGGLSSSVSERQLESAFSRYGKILETQIMLERDTGRPRGFGFLTFADRRG 60
           M+   EYR F+GGL+ + S+R L  AF +YG ++E +++L++ +GR RGFGF+TF +++ 
Sbjct: 1   MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60

Query: 61  MDDAIREMHGHELGERTITVNKAEPKMEG----DNSESGFRRGGYSSGGRASFGRGGDRS 120
           MD+AI  M+G +L  RTITV+KA+P   G    ++ + G  RG      R S GRGG   
Sbjct: 61  MDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGDRGRDRGYDRDRSRPSGGRGG--- 120

Query: 121 VGQDECFKCGRPGHWARDCPSAGGGVRGRVGDSFSLRSRFDSDGRGDRFGEDRDRYI--D 180
               +CFKCG+PGH+AR+CPS                     DG G RF    DRY   D
Sbjct: 121 ---GDCFKCGKPGHFARECPSES-----------------SRDG-GGRFSSKDDRYSSKD 180

Query: 181 DRYDLGRDGGRYGDR-DRFDRRDDKYGSRDRYFDDRYPSAGDRFA---GGGDRYDVSDRN 240
           DRY  G    RYG + DR+  +DD+Y S+    DDRY S  DR+    GGG RY      
Sbjct: 181 DRY--GAKDDRYGAKEDRYGAKDDRYSSK----DDRYSSKDDRYGSRDGGGSRYGPDRSG 240

Query: 241 PQNGYAKDRGSYGRDIGPRSGSDRYGSGGPARYEGRSLRDRPGPYDRPSRGG 283
            + G        GR    R G  R   GG         R    PYDRP  GG
Sbjct: 241 ERAG--------GRS---RDGGSRGAPGGE--------RHSRAPYDRPRAGG 243

[Close]

BLAST of Sed0027411 vs. ExPASy Swiss-Prot
Match: P49310 (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.6e-22
Identity = 64/148 (43.24%), Postives = 91/148 (61.49%), Query Frame = 0


Query: 1   MAGKD-EYRIFVGGLSSSVSERQLESAFSRYGKILETQIMLERDTGRPRGFGFLTFADRR 60
           MA  D EYR FVGGL+ +  +R LE+AFS+YG++L+++I+ +R+TGR RGFGF+TF D +
Sbjct: 1   MASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  GMDDAIREMHGHELGERTITVNKAEPKMEGDNSESGFRRGGYSSGGRASFGRGGD--RSV 120
            M DAI  M+G +L  R+ITVN+A+ +  G         GGY SGG   +G GG      
Sbjct: 61  SMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGGRGGGGGYRSGGGGGYGGGGGGYGGG 120

Query: 121 GQDECFKCGRPGHWARDCPSAGGGVRGR 146
           G++  +  G  G+ +R     G G  GR
Sbjct: 121 GREGGYSGGGGGYSSRGGGGGGYGGGGR 148

[Close]

BLAST of Sed0027411 vs. ExPASy Swiss-Prot
Match: Q03250 (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.5e-20
Identity = 63/151 (41.72%), Postives = 91/151 (60.26%), Query Frame = 0


Query: 2   AGKDEYRIFVGGLSSSVSERQLESAFSRYGKILETQIMLERDTGRPRGFGFLTFADRRGM 61
           +G  EYR FVGGL+ +  +R LE+AF++YG +++++I+ +R+TGR RGFGF+TF D + M
Sbjct: 3   SGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAM 62

Query: 62  DDAIREMHGHELGERTITVNKAEPKMEG------DNSESGFRRGGYS--SGGRASFGRGG 121
            DAI  M+G +L  R+ITVN+A+ +  G           G+R GG    SGG  S+G GG
Sbjct: 63  KDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYSGGGGSYGGGG 122

Query: 122 DRSVGQDECFKCGRPGHWARDCPSAGGGVRG 145
            R  G    +  G  G+ +R     GGG  G
Sbjct: 123 GRREGGGG-YSGGGGGYSSR---GGGGGSYG 149

[Close]

BLAST of Sed0027411 vs. ExPASy TrEMBL
Match: A0A6J1JS04 (glycine-rich RNA-binding protein RZ1C OS=Cucurbita maxima OX=3661 GN=LOC111487287 PE=4 SV=1)

HSP 1 Score: 504.6 bits (1298), Expect = 2.8e-139
Identity = 257/291 (88.32%), Postives = 267/291 (91.75%), Query Frame = 0


Query: 1   MAGKDEYRIFVGGLSSSVSERQLESAFSRYGKILETQIMLERDTGRPRGFGFLTFADRRG 60
           MA KDEYRIFVGGLS +VSER+LE+AFSRYGKI+ETQIMLERDTGRPRGFGF+TFADRRG
Sbjct: 1   MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQIMLERDTGRPRGFGFITFADRRG 60

Query: 61  MDDAIREMHGHELGERTITVNKAEPKMEGDNSESGFRRGGYSSGGRASFGRGGDRSVGQD 120
           MDDAIREMHGHE GER I+VNKAEPKMEGD+ E GFR GGYSSGGRASFGRGGDRSVGQD
Sbjct: 61  MDDAIREMHGHEFGERIISVNKAEPKMEGDDREPGFRGGGYSSGGRASFGRGGDRSVGQD 120

Query: 121 ECFKCGRPGHWARDCPSAGGGVRGRVGDSFSLRSRFDSDGRGDRFGEDRDRYIDDRYDLG 180
           ECFKCGRPGHWARDCPSAGGG RGR   SFS RSRFD D RGDRFG DRDRY+DDRYD G
Sbjct: 121 ECFKCGRPGHWARDCPSAGGG-RGRGRGSFSSRSRFDGDSRGDRFGGDRDRYVDDRYDGG 180

Query: 181 RDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFAGGGDRYDVSDRNPQNGYAKDRG 240
           RDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFA GGDRYDVSDR PQNGY KDRG
Sbjct: 181 RDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFA-GGDRYDVSDRYPQNGYVKDRG 240

Query: 241 SYGRDIGPRSGSDRYGS-GGPARYEGRSLRDRPGPYDRPSRGGRPSSYERY 291
            Y RDIGPRSGSDRYG+ GGP RYEGR+ RDRPGPYDRPSRGGRPSSYERY
Sbjct: 241 GYDRDIGPRSGSDRYGTGGGPGRYEGRNYRDRPGPYDRPSRGGRPSSYERY 289

[Close]

BLAST of Sed0027411 vs. ExPASy TrEMBL
Match: A0A6J1HB93 (glycine-rich RNA-binding protein RZ1C-like OS=Cucurbita moschata OX=3662 GN=LOC111462429 PE=4 SV=1)

HSP 1 Score: 504.2 bits (1297), Expect = 3.6e-139
Identity = 257/291 (88.32%), Postives = 266/291 (91.41%), Query Frame = 0


Query: 1   MAGKDEYRIFVGGLSSSVSERQLESAFSRYGKILETQIMLERDTGRPRGFGFLTFADRRG 60
           MA KDEYRIFVGGLS +VSER+LE+AFSRYGKI+ETQIMLERDTGRPRGFGF+TFADRRG
Sbjct: 1   MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQIMLERDTGRPRGFGFITFADRRG 60

Query: 61  MDDAIREMHGHELGERTITVNKAEPKMEGDNSESGFRRGGYSSGGRASFGRGGDRSVGQD 120
           MDDAIREMHGHE GER I+VNKAEPKMEGD+ E GFR GGYSSGGRASFGRGGDRSVGQD
Sbjct: 61  MDDAIREMHGHEFGERIISVNKAEPKMEGDDREPGFRGGGYSSGGRASFGRGGDRSVGQD 120

Query: 121 ECFKCGRPGHWARDCPSAGGGVRGRVGDSFSLRSRFDSDGRGDRFGEDRDRYIDDRYDLG 180
           ECFKCGRPGHWARDCPSAGGG RGR   SFS RSRFD D RGDRFG DRDRY+DDRYD G
Sbjct: 121 ECFKCGRPGHWARDCPSAGGG-RGRGRGSFSSRSRFDGDSRGDRFGGDRDRYVDDRYDGG 180

Query: 181 RDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFAGGGDRYDVSDRNPQNGYAKDRG 240
           RDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRF  GGDRYDVSDR PQNGY KDRG
Sbjct: 181 RDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFT-GGDRYDVSDRYPQNGYVKDRG 240

Query: 241 SYGRDIGPRSGSDRYGS-GGPARYEGRSLRDRPGPYDRPSRGGRPSSYERY 291
            Y RDIGPRSGSDRYG+ GGP RYEGRS RDRPGPYDRPSRGGRPSSYERY
Sbjct: 241 GYDRDIGPRSGSDRYGTGGGPGRYEGRSYRDRPGPYDRPSRGGRPSSYERY 289

[Close]

BLAST of Sed0027411 vs. ExPASy TrEMBL
Match: A0A6J1BW89 (glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111006270 PE=4 SV=1)

HSP 1 Score: 498.4 bits (1282), Expect = 2.0e-137
Identity = 255/290 (87.93%), Postives = 262/290 (90.34%), Query Frame = 0


Query: 1   MAGKDEYRIFVGGLSSSVSERQLESAFSRYGKILETQIMLERDTGRPRGFGFLTFADRRG 60
           MAGKDEYRIFVGGLS ++SERQLE+AFSRYGKILETQIMLERDTGRPRGFGF+TFADRRG
Sbjct: 1   MAGKDEYRIFVGGLSWNISERQLENAFSRYGKILETQIMLERDTGRPRGFGFITFADRRG 60

Query: 61  MDDAIREMHGHELGERTITVNKAEPKMEGDNSESGFRRGGYSSGGRASFGRGGDRSVGQD 120
           MDDAIREMHG ELGERTI+VNKAEPKMEGD+ E GFR GGYSSGGR SFGRGGDRSVGQD
Sbjct: 61  MDDAIREMHGRELGERTISVNKAEPKMEGDDGEPGFRGGGYSSGGRPSFGRGGDRSVGQD 120

Query: 121 ECFKCGRPGHWARDCPSAGGGVRGRVGDSFSLRSRFDSDGRGDRFGEDRDRYIDDRYDLG 180
           ECFKCGRPGHWARDCPS GGG RGR   SFS RSRFDSD RGDRFG DRDRY+DDRY   
Sbjct: 121 ECFKCGRPGHWARDCPSVGGG-RGRGRGSFSSRSRFDSDSRGDRFGGDRDRYVDDRY--- 180

Query: 181 RDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFAGGGDRYDVSDRNPQNGYAKDRG 240
            DGGRYGDRD FDRRDDKYGSRDRYFDDRYPS GDRFA GGDRYDVSDR PQNGY KDRG
Sbjct: 181 -DGGRYGDRDHFDRRDDKYGSRDRYFDDRYPSGGDRFA-GGDRYDVSDRYPQNGYVKDRG 240

Query: 241 SYGRDIGPRSGSDRYGSGGPARYEGRSLRDRPGPYDRPSRGGRPSSYERY 291
            Y RDIGPRSGSDRYGSGGP RYEGRS RDR GPYDRPSRGGRPSSYERY
Sbjct: 241 GYNRDIGPRSGSDRYGSGGPGRYEGRSYRDRAGPYDRPSRGGRPSSYERY 284

[Close]

BLAST of Sed0027411 vs. ExPASy TrEMBL
Match: A0A0A0LQB5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G324460 PE=4 SV=1)

HSP 1 Score: 470.3 bits (1209), Expect = 5.8e-129
Identity = 244/290 (84.14%), Postives = 258/290 (88.97%), Query Frame = 0


Query: 1   MAGKDEYRIFVGGLSSSVSERQLESAFSRYGKILETQIMLERDTGRPRGFGFLTFADRRG 60
           MA KDEYRIFVGGLS ++SERQLE+AF R+GK+LETQIMLERDTGRPRGFGF+TFADRRG
Sbjct: 1   MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRG 60

Query: 61  MDDAIREMHGHELGERTITVNKAEPKMEGDNSESGFRRGGYSSGGRASFGRGGDRSVGQD 120
           MDDAIREMHG ELGER I+VNKAEPKMEGD++E GFR GGYSSGGRASFGRG DRSVGQD
Sbjct: 61  MDDAIREMHGQELGERIISVNKAEPKMEGDDTEQGFRGGGYSSGGRASFGRGKDRSVGQD 120

Query: 121 ECFKCGRPGHWARDCPSAGGGVRGRVGDSFSLRSRFDSDGRGDRFGEDRDRYIDDRYDLG 180
           ECFKCGRPGHWARDCPS GGG RG    SFS RSRFDSDGRGDRFG DRDRY+D+RY   
Sbjct: 121 ECFKCGRPGHWARDCPSVGGG-RGGGRGSFSSRSRFDSDGRGDRFGGDRDRYVDERY--- 180

Query: 181 RDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFAGGGDRYDVSDRNPQNGYAKDRG 240
            +GGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRF  G DRYDVSDR PQNGY KDR 
Sbjct: 181 -NGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFT-GSDRYDVSDRYPQNGYVKDR- 240

Query: 241 SYGRDIGPRSGSDRYGSGGPARYEGRSLRDRPGPYDRPSRGGRPSSYERY 291
            Y RDIGPRSGSDRYGSGGP R+EGRS RDR GPYDRPSR GRPSSY+RY
Sbjct: 241 VYDRDIGPRSGSDRYGSGGPGRHEGRSYRDRTGPYDRPSRVGRPSSYDRY 283

[Close]

BLAST of Sed0027411 vs. ExPASy TrEMBL
Match: A0A6J1BW59 (glycine-rich RNA-binding protein RZ1C-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111006270 PE=4 SV=1)

HSP 1 Score: 432.2 bits (1110), Expect = 1.7e-117
Identity = 221/252 (87.70%), Postives = 225/252 (89.29%), Query Frame = 0


Query: 39  MLERDTGRPRGFGFLTFADRRGMDDAIREMHGHELGERTITVNKAEPKMEGDNSESGFRR 98
           MLERDTGRPRGFGF+TFADRRGMDDAIREMHG ELGERTI+VNKAEPKMEGD+ E GFR 
Sbjct: 1   MLERDTGRPRGFGFITFADRRGMDDAIREMHGRELGERTISVNKAEPKMEGDDGEPGFRG 60

Query: 99  GGYSSGGRASFGRGGDRSVGQDECFKCGRPGHWARDCPSAGGGVRGRVGDSFSLRSRFDS 158
           GGYSSGGR SFGRGGDRSVGQDECFKCGRPGHWARDCPS GGG RGR   SFS RSRFDS
Sbjct: 61  GGYSSGGRPSFGRGGDRSVGQDECFKCGRPGHWARDCPSVGGG-RGRGRGSFSSRSRFDS 120

Query: 159 DGRGDRFGEDRDRYIDDRYDLGRDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFA 218
           D RGDRFG DRDRY+DDRY    DGGRYGDRD FDRRDDKYGSRDRYFDDRYPS GDRFA
Sbjct: 121 DSRGDRFGGDRDRYVDDRY----DGGRYGDRDHFDRRDDKYGSRDRYFDDRYPSGGDRFA 180

Query: 219 GGGDRYDVSDRNPQNGYAKDRGSYGRDIGPRSGSDRYGSGGPARYEGRSLRDRPGPYDRP 278
            GGDRYDVSDR PQNGY KDRG Y RDIGPRSGSDRYGSGGP RYEGRS RDR GPYDRP
Sbjct: 181 -GGDRYDVSDRYPQNGYVKDRGGYNRDIGPRSGSDRYGSGGPGRYEGRSYRDRAGPYDRP 240

Query: 279 SRGGRPSSYERY 291
           SRGGRPSSYERY
Sbjct: 241 SRGGRPSSYERY 246

[Close]

BLAST of Sed0027411 vs. TAIR 10
Match: AT5G04280.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 284.3 bits (726), Expect = 1.1e-76
Identity = 180/307 (58.63%), Postives = 207/307 (67.43%), Query Frame = 0


Query: 1   MAGKDEYRIFVGGLSSSVSERQLESAFSRYGKILETQIMLERDTGRPRGFGFLTFADRRG 60
           MA K+  RIFVGGLS  V++R LE AFSR+G IL+ QIMLERDTGR RGFGF+TFADRR 
Sbjct: 1   MAAKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRA 60

Query: 61  MDDAIREMHGHELGERTITVNKAEPKMEGDNSES----GFRRGGYSSGGRASFGRGGDRS 120
           MD++IREMHG + G+R I+VN+AEPK+  D+ ES    G R  GYS  G+ SFG GG   
Sbjct: 61  MDESIREMHGRDFGDRVISVNRAEPKLGRDDGESHGSRGGRDSGYSIAGKGSFGGGGGGG 120

Query: 121 --VGQDECFKCGRPGHWARDCPSAGGGVRGRVGDSFSLRSRF-DSDGRGDRFGE-----D 180
             VG+DECFKCGR GHWARDCPSAGGG  G VG   S  S +  SDGR DR+ +     D
Sbjct: 121 GRVGEDECFKCGRVGHWARDCPSAGGGRGGPVGGFSSRASAYGGSDGRVDRYADRDRYVD 180

Query: 181 RDRYIDDRYDLGRDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFAGGGDRYD-VS 240
           R+RYIDDRYD      RYG RDRFD R + Y  RDRY  DRY +  DRFA GGDRY   S
Sbjct: 181 RERYIDDRYD---GAARYGARDRFDSR-EAYIPRDRYASDRYAAPADRFA-GGDRYSRGS 240

Query: 241 DRNPQNGYAKDRGSYGRDIGPRSGSDRYG---SGGPAR---YEGRSLRDRPG-PYDRPSR 288
           DR P   Y K R S+ RDI P +GSDRYG   +GGP R    EGR  R R G PY+RPSR
Sbjct: 241 DRYPPGSYDKAR-SFERDIAPSAGSDRYGGGRAGGPIRGGGEEGRGFRSRAGAPYERPSR 300

[Close]

BLAST of Sed0027411 vs. TAIR 10
Match: AT1G60650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 271.2 bits (692), Expect = 9.9e-73
Identity = 168/301 (55.81%), Postives = 194/301 (64.45%), Query Frame = 0


Query: 3   GKDEYRIFVGGLSSSVSERQLESAFSRYGKILETQIMLERDTGRPRGFGFLTFADRRGMD 62
           G  E RIFVGGLS  V+ERQLES F RYGKI E QIM+ RDTGRPRGFGF+TF DRRG D
Sbjct: 8   GNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGAD 67

Query: 63  DAIREMHGHELGERTITVNKAEPKMEGDNSESGFRRGGYSSGGRASFGRGGDRSVGQDEC 122
           DAI+ MHG ELG + I+VNKAEPK+ G++ +   + GGYSS G+ +          +DEC
Sbjct: 68  DAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGT----------EDEC 127

Query: 123 FKCGRPGHWARDCPSAGGGVRGRVGDSFSLRSRF-DSDGRGDRFGE-----------DRD 182
           FKC RPGHWARDCPS G   R R     ++RSR  D DG  DR+G+           + D
Sbjct: 128 FKCRRPGHWARDCPSTGDD-RERFRVPLAMRSRIGDIDGHRDRYGDRDLEREREREREFD 187

Query: 183 RYIDDRYDLGRDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFAGGGDRYDVSDRN 242
           RY+D R D  RDGGRY  RDRFD   DKY  RD Y  +RY   GDRF    DRY + + +
Sbjct: 188 RYMDGRRD--RDGGRYSYRDRFD-SGDKYEPRDHYPFERYAPPGDRFV--SDRYGMPEHH 247

Query: 243 PQNGYAKDRGSYGRDIGPRSGSDRYGSGGPARYEGRSLRDRPGPYDRPSR-GGRPSSYER 291
            +N Y     SY RD   R  SDRYG  GP R EGR  R RPGPYDRPSR GGRPSSYER
Sbjct: 248 LENEYRGRERSYDRDRYARDTSDRYGDMGPIRDEGRPYRSRPGPYDRPSRPGGRPSSYER 292

[Close]

BLAST of Sed0027411 vs. TAIR 10
Match: AT1G60650.2 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 271.2 bits (692), Expect = 9.9e-73
Identity = 168/301 (55.81%), Postives = 194/301 (64.45%), Query Frame = 0


Query: 3   GKDEYRIFVGGLSSSVSERQLESAFSRYGKILETQIMLERDTGRPRGFGFLTFADRRGMD 62
           G  E RIFVGGLS  V+ERQLES F RYGKI E QIM+ RDTGRPRGFGF+TF DRRG D
Sbjct: 8   GNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGAD 67

Query: 63  DAIREMHGHELGERTITVNKAEPKMEGDNSESGFRRGGYSSGGRASFGRGGDRSVGQDEC 122
           DAI+ MHG ELG + I+VNKAEPK+ G++ +   + GGYSS G+ +          +DEC
Sbjct: 68  DAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGT----------EDEC 127

Query: 123 FKCGRPGHWARDCPSAGGGVRGRVGDSFSLRSRF-DSDGRGDRFGE-----------DRD 182
           FKC RPGHWARDCPS G   R R     ++RSR  D DG  DR+G+           + D
Sbjct: 128 FKCRRPGHWARDCPSTGDD-RERFRVPLAMRSRIGDIDGHRDRYGDRDLEREREREREFD 187

Query: 183 RYIDDRYDLGRDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFAGGGDRYDVSDRN 242
           RY+D R D  RDGGRY  RDRFD   DKY  RD Y  +RY   GDRF    DRY + + +
Sbjct: 188 RYMDGRRD--RDGGRYSYRDRFD-SGDKYEPRDHYPFERYAPPGDRFV--SDRYGMPEHH 247

Query: 243 PQNGYAKDRGSYGRDIGPRSGSDRYGSGGPARYEGRSLRDRPGPYDRPSR-GGRPSSYER 291
            +N Y     SY RD   R  SDRYG  GP R EGR  R RPGPYDRPSR GGRPSSYER
Sbjct: 248 LENEYRGRERSYDRDRYARDTSDRYGDMGPIRDEGRPYRSRPGPYDRPSRPGGRPSSYER 292

[Close]

BLAST of Sed0027411 vs. TAIR 10
Match: AT3G26420.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 144.4 bits (363), Expect = 1.4e-34
Identity = 114/292 (39.04%), Postives = 151/292 (51.71%), Query Frame = 0


Query: 1   MAGKDEYRIFVGGLSSSVSERQLESAFSRYGKILETQIMLERDTGRPRGFGFLTFADRRG 60
           M+   EYR F+GGL+ + S+R L  AF +YG ++E +++L++ +GR RGFGF+TF +++ 
Sbjct: 1   MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60

Query: 61  MDDAIREMHGHELGERTITVNKAEPKMEG----DNSESGFRRGGYSSGGRASFGRGGDRS 120
           MD+AI  M+G +L  RTITV+KA+P   G    ++ + G  RG      R S GRGG   
Sbjct: 61  MDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGDRGRDRGYDRDRSRPSGGRGG--- 120

Query: 121 VGQDECFKCGRPGHWARDCPSAGGGVRGRVGDSFSLRSRFDSDGRGDRFGEDRDRYI--D 180
               +CFKCG+PGH+AR+CPS                     DG G RF    DRY   D
Sbjct: 121 ---GDCFKCGKPGHFARECPSES-----------------SRDG-GGRFSSKDDRYSSKD 180

Query: 181 DRYDLGRDGGRYGDR-DRFDRRDDKYGSRDRYFDDRYPSAGDRFA---GGGDRYDVSDRN 240
           DRY  G    RYG + DR+  +DD+Y S+    DDRY S  DR+    GGG RY      
Sbjct: 181 DRY--GAKDDRYGAKEDRYGAKDDRYSSK----DDRYSSKDDRYGSRDGGGSRYGPDRSG 240

Query: 241 PQNGYAKDRGSYGRDIGPRSGSDRYGSGGPARYEGRSLRDRPGPYDRPSRGG 283
            + G        GR    R G  R   GG         R    PYDRP  GG
Sbjct: 241 ERAG--------GRS---RDGGSRGAPGGE--------RHSRAPYDRPRAGG 243

[Close]

BLAST of Sed0027411 vs. TAIR 10
Match: AT2G21660.2 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 103.2 bits (256), Expect = 3.6e-22
Identity = 61/150 (40.67%), Postives = 87/150 (58.00%), Query Frame = 0


Query: 2   AGKDEYRIFVGGLSSSVSERQLESAFSRYGKILETQIMLERDTGRPRGFGFLTFADRRGM 61
           +G  EYR FVGGL+ +  +R LE+AF++YG +++++I+ +R+TGR RGFGF+TF D + M
Sbjct: 3   SGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAM 62

Query: 62  DDAIREMHGHELGERTITVNKAEPKMEGDNSESGFRRGG-YSSGGRASFGRGGDRSVGQD 121
            DAI  M+G +L  R+ITVN+A+ +  G     G R GG Y  GG    G GG    G  
Sbjct: 63  KDAIEGMNGQDLDGRSITVNEAQSR--GSGGGGGHRGGGSYGGGGGRREGGGGYSGGGGG 122

Query: 122 ECFKCGRPGHWARDCPSAGGGVRGRVGDSF 151
              + G  G +       GGG  G  G  +
Sbjct: 123 YSSRGGGGGSYGGGRREGGGGYGGGEGGGY 150

The following BLAST results are available for this feature:

BLAST of Sed0027411 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6602289.1	2.6e-139	88.66	Glycine-rich RNA-binding protein RZ1C, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_022990423.1	5.7e-139	88.32	glycine-rich RNA-binding protein RZ1C [Cucurbita maxima] >XP_022990424.1 glycine...	[more]
XP_022961758.1	7.4e-139	88.32	glycine-rich RNA-binding protein RZ1C-like [Cucurbita moschata] >XP_022961766.1 ...	[more]
XP_023544240.1	6.3e-138	87.63	glycine-rich RNA-binding protein RZ1C [Cucurbita pepo subsp. pepo] >XP_023544248...	[more]
XP_022133790.1	4.1e-137	87.93	glycine-rich RNA-binding protein RZ1C-like isoform X1 [Momordica charantia]	[more]

BLAST of Sed0027411 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWN5	1.6e-75	58.63	Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana OX=3702 GN=RZ1C PE...	[more]
O22703	1.4e-71	55.81	Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE...	[more]
Q9LIN3	2.0e-33	39.04	Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana OX=3702 GN=RZ1A PE...	[more]
P49310	1.6e-22	43.24	Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]
Q03250	1.5e-20	41.72	Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 ...	[more]

BLAST of Sed0027411 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JS04	2.8e-139	88.32	glycine-rich RNA-binding protein RZ1C OS=Cucurbita maxima OX=3661 GN=LOC11148728...	[more]
A0A6J1HB93	3.6e-139	88.32	glycine-rich RNA-binding protein RZ1C-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1BW89	2.0e-137	87.93	glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Momordica charantia OX=...	[more]
A0A0A0LQB5	5.8e-129	84.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G324460 PE=4 SV=1	[more]
A0A6J1BW59	1.7e-117	87.70	glycine-rich RNA-binding protein RZ1C-like isoform X2 OS=Momordica charantia OX=...	[more]

BLAST of Sed0027411 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G04280.1	1.1e-76	58.63	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT1G60650.1	9.9e-73	55.81	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT1G60650.2	9.9e-73	55.81	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT3G26420.1	1.4e-34	39.04	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT2G21660.2	3.6e-22	40.67	cold, circadian rhythm, and rna binding 2	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 83..99 e-value: 2.7E-6 score: 36.9
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 83..99 e-value: 8.5E-9 score: 35.1
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 84..99 score: 11.449344
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..79 e-value: 5.3E-15 score: 57.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 4..41 e-value: 5.0E-8 score: 32.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 1..47 score: 10.684241
None	No IPR available	GENE3D	4.10.60.10		coord: 80..125 e-value: 5.2E-9 score: 38.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..173
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..252
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 226..252
None	No IPR available	PANTHER	PTHR15241:SF294	GLYCINE-RICH RNA-BINDING PROTEIN RZ1B-LIKE	coord: 1..192
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 1..192
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 3..76
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 65..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0027411.1	Sed0027411.1	mRNA
Sed0027411.2	Sed0027411.2	mRNA
Sed0027411.3	Sed0027411.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003676	nucleic acid binding