Sed0027353 (gene) Chayote v1

Overview


Name	Sed0027353
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG01: 10747499 .. 10747941 (+)
RNA-Seq Expression	Sed0027353
Synteny	Sed0027353

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGAAACCCCATTATGAAATGAATGTTCATGCTTGATTCAGAGTTGATTCCATTTTCTTAAGGAACTTCTCTGTTCTGGAAGGCTCTGTTTTTCAAAGGAAATATGAGTATTTTGATGAGAAGAAATCAAAATGGATACTCAAAGATGGAGAAAGAAGACCCAGAAGAGAAAAAGCACAGACAAGCTCAGTTCTTGATTTACAAGATAATGGAGCAGGCAAATAATGGCAAAAGTAGAAGACCCTCGAGTCTCCGAATCCGAATACGAAAGTTTAAGTTAAGGATTGGAAAGAGGTTGAAGAAGCTGAAGAAAGTTATGTCAATGAGTTTGTCAATAGCAAGAACTGGTGTCTGCAAGCAATTTGGACAGCTTAGAACTTGTAAAAGCCTTTTTGGACCACCCAAGGTGGAAACTTTGGCCTTTCCTTCTTTGGTTACTTGA

mRNA sequence

AAAGAAACCCCATTATGAAATGAATGTTCATGCTTGATTCAGAGTTGATTCCATTTTCTTAAGGAACTTCTCTGTTCTGGAAGGCTCTGTTTTTCAAAGGAAATATGAGTATTTTGATGAGAAGAAATCAAAATGGATACTCAAAGATGGAGAAAGAAGACCCAGAAGAGAAAAAGCACAGACAAGCTCAGTTCTTGATTTACAAGATAATGGAGCAGGCAAATAATGGCAAAAGTAGAAGACCCTCGAGTCTCCGAATCCGAATACGAAAGTTTAAGTTAAGGATTGGAAAGAGGTTGAAGAAGCTGAAGAAAGTTATGTCAATGAGTTTGTCAATAGCAAGAACTGGTGTCTGCAAGCAATTTGGACAGCTTAGAACTTGTAAAAGCCTTTTTGGACCACCCAAGGTGGAAACTTTGGCCTTTCCTTCTTTGGTTACTTGA

Coding sequence (CDS)

ATGAGTATTTTGATGAGAAGAAATCAAAATGGATACTCAAAGATGGAGAAAGAAGACCCAGAAGAGAAAAAGCACAGACAAGCTCAGTTCTTGATTTACAAGATAATGGAGCAGGCAAATAATGGCAAAAGTAGAAGACCCTCGAGTCTCCGAATCCGAATACGAAAGTTTAAGTTAAGGATTGGAAAGAGGTTGAAGAAGCTGAAGAAAGTTATGTCAATGAGTTTGTCAATAGCAAGAACTGGTGTCTGCAAGCAATTTGGACAGCTTAGAACTTGTAAAAGCCTTTTTGGACCACCCAAGGTGGAAACTTTGGCCTTTCCTTCTTTGGTTACTTGA

Protein sequence

MSILMRRNQNGYSKMEKEDPEEKKHRQAQFLIYKIMEQANNGKSRRPSSLRIRIRKFKLRIGKRLKKLKKVMSMSLSIARTGVCKQFGQLRTCKSLFGPPKVETLAFPSLVT

Homology

[Close]

BLAST of Sed0027353 vs. NCBI nr
Match: XP_023001322.1 (uncharacterized protein LOC111495486 [Cucurbita maxima])

HSP 1 Score: 171.0 bits (432), Expect = 5.8e-39
Identity = 90/112 (80.36%), Postives = 96/112 (85.71%), Query Frame = 0


Query: 1   MSILMRRNQNGYSKMEKEDPEEKKHRQAQFLIYKIMEQANNGKSRRPSSLRIRIRKFKLR 60
           MS L+ R QNGYS+MEKEDPEEKKHRQAQFLIYKIMEQAN+G  RR S LRIRIRKFKLR
Sbjct: 1   MSGLVTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGTRRRSSCLRIRIRKFKLR 60

Query: 61  IGKRLKKLKKVMSMSLSIARTGVCKQFGQLRTCKSLFGPPKVETLAFPSLVT 113
           IG+RLKKLKK MSM    AR G+CKQFGQLRTCKSLFG PK E LAFPSLV+
Sbjct: 61  IGRRLKKLKKTMSMGFCTARNGICKQFGQLRTCKSLFGRPKEEALAFPSLVS 112

[Close]

BLAST of Sed0027353 vs. NCBI nr
Match: KAG7019685.1 (hypothetical protein SDJN02_18648, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169.1 bits (427), Expect = 2.2e-38
Identity = 89/112 (79.46%), Postives = 96/112 (85.71%), Query Frame = 0


Query: 1   MSILMRRNQNGYSKMEKEDPEEKKHRQAQFLIYKIMEQANNGKSRRPSSLRIRIRKFKLR 60
           MS L+ R QNGYS+MEKEDPEEKKHRQAQFLIYKIMEQAN+G  RR S LRIRIRKFKLR
Sbjct: 1   MSGLVTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGSRRRSSCLRIRIRKFKLR 60

Query: 61  IGKRLKKLKKVMSMSLSIARTGVCKQFGQLRTCKSLFGPPKVETLAFPSLVT 113
           IG+RLKKLKK MSM +  AR G+CKQFGQLRTCKSLFG  K E LAFPSLV+
Sbjct: 61  IGRRLKKLKKTMSMGICTARNGICKQFGQLRTCKSLFGRAKEEALAFPSLVS 112

[Close]

BLAST of Sed0027353 vs. NCBI nr
Match: KAG6584084.1 (hypothetical protein SDJN03_20016, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 168.7 bits (426), Expect = 2.9e-38
Identity = 89/112 (79.46%), Postives = 96/112 (85.71%), Query Frame = 0


Query: 1   MSILMRRNQNGYSKMEKEDPEEKKHRQAQFLIYKIMEQANNGKSRRPSSLRIRIRKFKLR 60
           MS L+ R QNGYS+MEKEDPEEKKHRQAQFLIYKIMEQAN+G  RR S LRIRIRKFKLR
Sbjct: 1   MSGLVTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGSRRRSSCLRIRIRKFKLR 60

Query: 61  IGKRLKKLKKVMSMSLSIARTGVCKQFGQLRTCKSLFGPPKVETLAFPSLVT 113
           IG+RLKKLKK MSM +  AR G+CKQFGQLRTCKSLFG  K E LAFPSLV+
Sbjct: 61  IGRRLKKLKKTMSMGICTARIGICKQFGQLRTCKSLFGRAKEEALAFPSLVS 112

[Close]

BLAST of Sed0027353 vs. NCBI nr
Match: XP_022140046.1 (uncharacterized protein LOC111010796 [Momordica charantia])

HSP 1 Score: 166.8 bits (421), Expect = 1.1e-37
Identity = 88/113 (77.88%), Postives = 100/113 (88.50%), Query Frame = 0


Query: 1   MSILMRRNQNGYSKMEKEDPEEKKHRQAQFLIYKIMEQANNGKSRRPSSLRIRIRKFKLR 60
           MS+++ R Q+GYS+MEKEDPEEKKHR+AQFLIYKIMEQAN+G  RRP+ LRIRIRKFKLR
Sbjct: 1   MSVILTRKQSGYSRMEKEDPEEKKHREAQFLIYKIMEQANSGSRRRPTCLRIRIRKFKLR 60

Query: 61  IGKRLKKLKKVMSMSLSIARTGVCKQFGQLRTCKSLFG-PPKVETLAFPSLVT 113
           IG+RLKKL+K MS SLS AR G+CKQ GQLRTCKSLFG   KVETLAFPSLV+
Sbjct: 61  IGRRLKKLRKSMSASLSTARIGICKQIGQLRTCKSLFGRGRKVETLAFPSLVS 113

[Close]

BLAST of Sed0027353 vs. NCBI nr
Match: KGN64527.1 (hypothetical protein Csa_013452 [Cucumis sativus])

HSP 1 Score: 159.1 bits (401), Expect = 2.3e-35
Identity = 83/110 (75.45%), Postives = 93/110 (84.55%), Query Frame = 0


Query: 1   MSILMR-RNQNGYSKMEKEDPEEKKHRQAQFLIYKIMEQANNGKSRRPSSLRIRIRKFKL 60
           MS+LM  R   GYSKMEKEDP+EKKHRQAQFLIYKIMEQA+NG  RRPS LRIRIRKFKL
Sbjct: 1   MSVLMTVRRNGGYSKMEKEDPDEKKHRQAQFLIYKIMEQASNGSKRRPSCLRIRIRKFKL 60

Query: 61  RIGKRLKKLKKVMSMSLSIARTGVCKQFGQLRTCKSLFGPPKVETLAFPS 110
           R+G+R KK+KK M+MS S AR G+C QFGQLR+CKSLFG  KVETL FP+
Sbjct: 61  RMGRRWKKMKKTMAMSFSTARIGICNQFGQLRSCKSLFGKTKVETLNFPT 110

[Close]

BLAST of Sed0027353 vs. ExPASy TrEMBL
Match: A0A6J1KG77 (uncharacterized protein LOC111495486 OS=Cucurbita maxima OX=3661 GN=LOC111495486 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.8e-39
Identity = 90/112 (80.36%), Postives = 96/112 (85.71%), Query Frame = 0


Query: 1   MSILMRRNQNGYSKMEKEDPEEKKHRQAQFLIYKIMEQANNGKSRRPSSLRIRIRKFKLR 60
           MS L+ R QNGYS+MEKEDPEEKKHRQAQFLIYKIMEQAN+G  RR S LRIRIRKFKLR
Sbjct: 1   MSGLVTRRQNGYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGTRRRSSCLRIRIRKFKLR 60

Query: 61  IGKRLKKLKKVMSMSLSIARTGVCKQFGQLRTCKSLFGPPKVETLAFPSLVT 113
           IG+RLKKLKK MSM    AR G+CKQFGQLRTCKSLFG PK E LAFPSLV+
Sbjct: 61  IGRRLKKLKKTMSMGFCTARNGICKQFGQLRTCKSLFGRPKEEALAFPSLVS 112

[Close]

BLAST of Sed0027353 vs. ExPASy TrEMBL
Match: A0A6J1CEK3 (uncharacterized protein LOC111010796 OS=Momordica charantia OX=3673 GN=LOC111010796 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 5.3e-38
Identity = 88/113 (77.88%), Postives = 100/113 (88.50%), Query Frame = 0


Query: 1   MSILMRRNQNGYSKMEKEDPEEKKHRQAQFLIYKIMEQANNGKSRRPSSLRIRIRKFKLR 60
           MS+++ R Q+GYS+MEKEDPEEKKHR+AQFLIYKIMEQAN+G  RRP+ LRIRIRKFKLR
Sbjct: 1   MSVILTRKQSGYSRMEKEDPEEKKHREAQFLIYKIMEQANSGSRRRPTCLRIRIRKFKLR 60

Query: 61  IGKRLKKLKKVMSMSLSIARTGVCKQFGQLRTCKSLFG-PPKVETLAFPSLVT 113
           IG+RLKKL+K MS SLS AR G+CKQ GQLRTCKSLFG   KVETLAFPSLV+
Sbjct: 61  IGRRLKKLRKSMSASLSTARIGICKQIGQLRTCKSLFGRGRKVETLAFPSLVS 113

[Close]

BLAST of Sed0027353 vs. ExPASy TrEMBL
Match: A0A0A0LUT4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063510 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.1e-35
Identity = 83/110 (75.45%), Postives = 93/110 (84.55%), Query Frame = 0


Query: 1   MSILMR-RNQNGYSKMEKEDPEEKKHRQAQFLIYKIMEQANNGKSRRPSSLRIRIRKFKL 60
           MS+LM  R   GYSKMEKEDP+EKKHRQAQFLIYKIMEQA+NG  RRPS LRIRIRKFKL
Sbjct: 1   MSVLMTVRRNGGYSKMEKEDPDEKKHRQAQFLIYKIMEQASNGSKRRPSCLRIRIRKFKL 60

Query: 61  RIGKRLKKLKKVMSMSLSIARTGVCKQFGQLRTCKSLFGPPKVETLAFPS 110
           R+G+R KK+KK M+MS S AR G+C QFGQLR+CKSLFG  KVETL FP+
Sbjct: 61  RMGRRWKKMKKTMAMSFSTARIGICNQFGQLRSCKSLFGKTKVETLNFPT 110

[Close]

BLAST of Sed0027353 vs. ExPASy TrEMBL
Match: A0A540M3N5 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_021032 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.3e-20
Identity = 60/99 (60.61%), Postives = 78/99 (78.79%), Query Frame = 0


Query: 1  MSILMRRNQNGYSKMEKEDPEEKKHRQAQFLIYKIMEQANNGKSRRPSSLRIRIRKFKLR 60
          M++ +R++   YSKM+KEDPEE  HR+AQFLIYK+M+Q      RRPS+LRIR+RK KL+
Sbjct: 1  MAMTIRKSYGAYSKMDKEDPEEVNHRRAQFLIYKVMQQVE--MRRRPSNLRIRVRKLKLK 60

Query: 61 IGKRLKKLKKVMSMSLSIARTGVCKQ-FGQLRTCKSLFG 99
          IG+RLKKL+K M +S+S AR  V KQ F QL+TCK+LFG
Sbjct: 61 IGRRLKKLRKSMLLSISAARVCVYKQVFNQLKTCKTLFG 97

[Close]

BLAST of Sed0027353 vs. ExPASy TrEMBL
Match: W9RFE3 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_006294 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.2e-20
Identity = 58/96 (60.42%), Postives = 74/96 (77.08%), Query Frame = 0


Query: 4  LMRRNQNGYSKMEKEDPEEKKHRQAQFLIYKIMEQANNGKSRRPSSLRIRIRKFKLRIGK 63
          L+ R  N YSK++KEDPEE+  R+AQFLIYK+MEQA++   RRPS LRIRIRK K++IGK
Sbjct: 3  LVLRKPNAYSKIDKEDPEERNRRRAQFLIYKVMEQADSMSRRRPSYLRIRIRKLKVKIGK 62

Query: 64 RLKKLKKVMSMSLSIARTGVCKQF-GQLRTCKSLFG 99
          RL KL+K M +S+S A+  VCKQ   Q +TC+ LFG
Sbjct: 63 RLTKLRKSMLLSISAAKVSVCKQVCSQFKTCRRLFG 98

[Close]

BLAST of Sed0027353 vs. TAIR 10
Match: AT4G04745.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21902.1); Has 32 Blast hits to 32 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-08
Identity = 37/94 (39.36%), Postives = 61/94 (64.89%), Query Frame = 0


Query: 1   MSILMRRNQNGYSKMEKEDPEEKKHRQAQFLIYKIMEQANN----GKSRRPSS---LRIR 60
           M+++++ +   Y+KMEKEDP+E  HR+AQFLI K++E+A++     + RR SS   + IR
Sbjct: 26  MALMVKNSPYEYTKMEKEDPQELIHRRAQFLIQKVLERADSKTRQHQQRRRSSGPLIMIR 85

Query: 61  IRKFKLRIGKRLKKLKKVMSMSLSIARTGVCKQF 88
           +   ++RIGK+L+KL+K  +   +   T   K F
Sbjct: 86  VVGIRMRIGKKLRKLRKTNTCICNNLITRFLKSF 119

[Close]

BLAST of Sed0027353 vs. TAIR 10
Match: AT1G11655.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21902.1); Has 22 Blast hits to 22 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.0 bits (123), Expect = 3.6e-07
Identity = 36/90 (40.00%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 12 YSKMEKEDPEEKKHRQAQFLIYKIMEQANNGKSRRPSS--LRIRIRKFKLRIGKRLKKLK 71
          YSKM+KEDPEE   R+A+FLIYK +++A+    R P S  +R+++   K++IGKRL KL+
Sbjct: 10 YSKMDKEDPEEVLSRRAKFLIYKTLQEADLISRRDPHSSFIRLKLYLLKVKIGKRLAKLR 69

Query: 72 KVMSMSLSIARTGVCKQFGQ--LRTCKSLF 98
          + +   +S  R G  ++     +R  K +F
Sbjct: 70 RSV---VSAVRFGGIRKHSHNGVRALKKMF 96

[Close]

BLAST of Sed0027353 vs. TAIR 10
Match: AT4G21902.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G04745.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 47.4 bits (111), Expect = 8.9e-06
Identity = 29/73 (39.73%), Postives = 52/73 (71.23%), Query Frame = 0


Query: 5  MRRNQNGYSKMEKEDPEEKKHRQAQFLIYKIMEQAN----NGKSRRPSSLRI---RIRKF 64
          M +N N Y+K+EKED  E  HR+AQFLI+KI+++A+      + +R +++++   R+   
Sbjct: 3  MMKNPNQYTKIEKEDLNEIIHRRAQFLIHKILQRADIETLRQQQKRNTTIKLFSFRVVGI 62

Query: 65 KLRIGKRLKKLKK 71
          +++IGK+L+KL+K
Sbjct: 63 RMKIGKKLRKLRK 75

The following BLAST results are available for this feature:

BLAST of Sed0027353 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023001322.1	5.8e-39	80.36	uncharacterized protein LOC111495486 [Cucurbita maxima]	[more]
KAG7019685.1	2.2e-38	79.46	hypothetical protein SDJN02_18648, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6584084.1	2.9e-38	79.46	hypothetical protein SDJN03_20016, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022140046.1	1.1e-37	77.88	uncharacterized protein LOC111010796 [Momordica charantia]	[more]
KGN64527.1	2.3e-35	75.45	hypothetical protein Csa_013452 [Cucumis sativus]	[more]

BLAST of Sed0027353 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0027353 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KG77	2.8e-39	80.36	uncharacterized protein LOC111495486 OS=Cucurbita maxima OX=3661 GN=LOC111495486...	[more]
A0A6J1CEK3	5.3e-38	77.88	uncharacterized protein LOC111010796 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A0A0LUT4	1.1e-35	75.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063510 PE=4 SV=1	[more]
A0A540M3N5	1.3e-20	60.61	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_021032 PE=4 SV=1	[more]
W9RFE3	2.2e-20	60.42	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_006294 PE=4 SV=1	[more]

BLAST of Sed0027353 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G04745.1	1.5e-08	39.36	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G11655.1	3.6e-07	40.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G21902.1	8.9e-06	39.73	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR35687:SF1	OS07G0516700 PROTEIN	coord: 4..101
None	No IPR available	PANTHER	PTHR35687	OS07G0516700 PROTEIN	coord: 4..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0027353.1	Sed0027353.1	mRNA