Sed0027344 (gene) Chayote v1

Overview
NameSed0027344
Typegene
OrganismSechium edule (Chayote v1)
Description60S ribosomal protein L30
LocationLG12: 27367373 .. 27370162 (-)
RNA-Seq ExpressionSed0027344
SyntenySed0027344
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAAAGCTAAAAAAATAATTCAGCTTACCCTAAAGCACCGGGGCTCTGTATATAAGTATGCATAAATTAGGGTTTTGGTTGTATTTGTATCCCATAGTCGGCGTCGACGAGCAGCAGCAGCTTTCTCAAATCTTCGATCATGGTTGCGGCGAAGAAGACGGTGAGTTTCTTATCCCTTTCTCGTCTATCTCTTCCTCTCCGCCTCATTGTCGGCACTGGTGGCCGTGGATTCGCAATCGATTTTGATTTCGATTTGGAACGAACGGATTTAGGGTTCTTTGTTCTTTCACATATTTCTGTTGTGAAAACCCTTAACAGAAGAAGACCCATGAGAGCATCAACAACAGGCTCGCTCTCGTCATGAAGAGCGGCAAATTCACCTTGGGATACAAAACAGTTCTCAAGACCTTGAGGAATTCTAAAGGTAATCAGTTGTTTAAATTTTCTTCTTTCTTGTCGATCTGATCTCTGGATTTTTTAGCTTCAGTTGATTAGTTGTATCTTAGTCAGGTCTGATTTTTGCCTAAATTACTCAAATTTTGAAAAAAAGAGAGTGGTTAAAGTCTGAAAGAAATGAAATAGTATTGTGCTCTTGATCTGAAACTTTGTTAATTTCAACATTCAAAGCATTGGCAAGATTTTTGAATGCTATGGGATCCGTATTGTCTGACTTGTCATCCCTGTTTTGGTACCTTAAGCTTTTGCATTTGAGGTTATATATTATAATCTTCTTGTATGCAGGTAAGCTGATCATCATTGCCAACAATTGCCCACCACTTCGAAAGTCCGAGATCGAGTATTATGCTATGTTGGCAAAGGTTGGAGTTCACCATTACAATGGAAGTATGTCCCTAACTTTTTTAATATTGGATTAGCCTTGTTTTATGTGTTGCATTCTAGCTAGTTTTGTCAAGAGAGCCTAGGTGATAAGTTTAATCCATGGTGGCTTCCTACCAAGGTTTGATTTCCTATGAGTTATTTGATATCCAAATGTTGTAGAATTGGATCGTTTTTTCGTGAGAATAGTCGAGGTGTACATTAGCTGGCCTGTGTACTCACGAATACAAAAGTAATACTTTGGGTTTTGCAGTATAAGTATGACCCTGCCTACCTTTACCTGCGTTTTATAGGCTGAGTGAAAAGTTCCAATTGCTATTTATGATCGTAAACTTGAGGGTAGGGGTGTTCGTCGGTCGGTCGGAGTTGTTTTTTGGAGAAAACCGACATCGATAAACGACATATCGGTTTTCTAATAATAAAAACCGAAAAAAATTTTGAATCGAGAATTCTGACGGACGGTCGATCGGGTCGGTCGGTTAAGGGTTTTTTTTTTAAAAAAAAACCAAATCTAAATATTTTTCATTGGAAAACCATAGATTTTACGCTTATAATTTACTTTTTTTTAGAAAATTCTCCGACCAACCGTCGGTTAATTATTTAATTTAACCGACTCTGACCGACCTTATCAAAAAACCAACCGACCGACCTTGATTCGGTTGGTTTTGGTCGGTCGGTTCGGTTTTCGGATAAAATGTGAACACCCCTACTTGAGGGGGTGTTTGTTTGACATATTTAGGTAGTTTTTTAGGTTAAGGAGTTATATTGATGAGTTATATTGAGTAGTTAAAAATTGAGAATTGTGCCAAAAACTTGTTTGGATGTAGTTTTTGTGTAGAGGAATTATAGCCAAAACCTTGTTTGGATGTAGATTTAAAATGAATAATTATTTTTAGTAGTTAAAAAAGAAATTATTGAAAATGAGTGGTTAAAAATAAGTTGTTTTGATTGATTTGAAAGGAATGATTAAAAATGAGTAGTTAGAATTGATTGAATAGTTATAAATGAATGATTAAAAATGAATGGTTAGAAATGAGAGTTGTTTTCAAAAGTAAAATTAAGGAGGAGTTGGTAGAAATTCGTTTGGATGTAAATTTTCGAGGAGTTAATAAATCCTAAACCTAACTCCTAGCTTAAAAACGTCAAACAAACAGCCCCCGATGGTATCTAGCTGCAATTGTTGAAATTTCTTAATGGCATTTTACCCATAACTCGAGCACTTTTACTTTACCCATCACGGCTATCTCCAAATTTTTTTATGGTTTATCATGATCCTAGATTTGTTCACATATCTTCCTCTGTATGAGATAGTTTGATTCGAGGATGCAATTGATTTATTTCCGAGGACTTATTGTGAGATAATTTCCTCTTTATTGTGTTCAGGCAATGTCGATCTTGGAACCGCTTGTGGCAAGTATTACAGAGTATGTTGCCTCAGCATTATCGATCCCGGTACACCTTCCTCTGATCAAATTGTATACTTCTTTTTTTTTTTTATCTGCCCTCACATTTTATTTAGTGATTGTGGATTTGAAATTATTTTCAGGTGATTCCGATATCATCAAGAACATGCCTGGAGACAGTTAGGTTGCAACTTCCTCTCCGATTATAGATTTTTGTTTCAGAGTTTCTTTTTAATCCGTTTAATTTTGGGTTGGTAGTGATGTTCGCTTGTGAGGCATGTTATTATTTATCGAATTGCAGTATAAACTCTGTGTTCGCCCGTTCTTATTCCAGATATTACTTTGATGTTCTACATTACCCACCTTAACGGATTCCGACAAGCACGATGCCCCAATTTTTTTTGTATTATTTGCATTAATTGTTCTAGTTCAAGGGGATATTTTGATGTGTGCAATGCAATGAAGTGTTAACTCACCTAGGGTATGCTTGGGGGAGGAAGGTGAATGAGAACGTGGGGGAAGAATAGGATACGAGAATGATTATGGGGAC

mRNA sequence

GCAAAGCTAAAAAAATAATTCAGCTTACCCTAAAGCACCGGGGCTCTGTATATAAGTATGCATAAATTAGGGTTTTGGTTGTATTTGTATCCCATAGTCGGCGTCGACGAGCAGCAGCAGCTTTCTCAAATCTTCGATCATGGTTGCGGCGAAGAAGACGAAGAAGACCCATGAGAGCATCAACAACAGGCTCGCTCTCGTCATGAAGAGCGGCAAATTCACCTTGGGATACAAAACAGTTCTCAAGACCTTGAGGAATTCTAAAGGTAAGCTGATCATCATTGCCAACAATTGCCCACCACTTCGAAAGTCCGAGATCGAGTATTATGCTATGTTGGCAAAGGTTGGAGTTCACCATTACAATGGAAGCAATGTCGATCTTGGAACCGCTTGTGGCAAGTATTACAGAGTATGTTGCCTCAGCATTATCGATCCCGGTGATTCCGATATCATCAAGAACATGCCTGGAGACAGTTAGGTTGCAACTTCCTCTCCGATTATAGATTTTTGTTTCAGAGTTTCTTTTTAATCCGTTTAATTTTGGGTTGGTAGTGATGTTCGCTTGTGAGGCATGTTATTATTTATCGAATTGCAGTATAAACTCTGTGTTCGCCCGTTCTTATTCCAGATATTACTTTGATGTTCTACATTACCCACCTTAACGGATTCCGACAAGCACGATGCCCCAATTTTTTTTGTATTATTTGCATTAATTGTTCTAGTTCAAGGGGATATTTTGATGTGTGCAATGCAATGAAGTGTTAACTCACCTAGGGTATGCTTGGGGGAGGAAGGTGAATGAGAACGTGGGGGAAGAATAGGATACGAGAATGATTATGGGGAC

Coding sequence (CDS)

ATGGTTGCGGCGAAGAAGACGAAGAAGACCCATGAGAGCATCAACAACAGGCTCGCTCTCGTCATGAAGAGCGGCAAATTCACCTTGGGATACAAAACAGTTCTCAAGACCTTGAGGAATTCTAAAGGTAAGCTGATCATCATTGCCAACAATTGCCCACCACTTCGAAAGTCCGAGATCGAGTATTATGCTATGTTGGCAAAGGTTGGAGTTCACCATTACAATGGAAGCAATGTCGATCTTGGAACCGCTTGTGGCAAGTATTACAGAGTATGTTGCCTCAGCATTATCGATCCCGGTGATTCCGATATCATCAAGAACATGCCTGGAGACAGTTAG

Protein sequence

MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKNMPGDS
Homology
[Close]
BLAST of Sed0027344 vs. NCBI nr
Match: XP_038878626.1 (60S ribosomal protein L30 [Benincasa hispida])

HSP 1 Score: 225.7 bits (574), Expect = 2.0e-55
Identity = 109/112 (97.32%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKTKKTHESINNRLALVMKSGK+TLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKNMPGDS 113
           EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIK+MPG+S
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGES 112

[Close]
BLAST of Sed0027344 vs. NCBI nr
Match: XP_004251199.1 (60S ribosomal protein L30 [Solanum lycopersicum] >XP_015056853.1 60S ribosomal protein L30 [Solanum pennellii] >XP_016548732.1 PREDICTED: 60S ribosomal protein L30 [Capsicum annuum])

HSP 1 Score: 224.6 bits (571), Expect = 4.4e-55
Identity = 108/111 (97.30%), Postives = 111/111 (100.00%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKTKKTHESINNRLALVMKSGK+TLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKNMPGD 112
           EYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSIIDPGDSDIIK+MPGD
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGD 111

[Close]
BLAST of Sed0027344 vs. NCBI nr
Match: XP_022960585.1 (60S ribosomal protein L30-like [Cucurbita moschata] >XP_022988235.1 60S ribosomal protein L30-like [Cucurbita maxima] >XP_023515547.1 60S ribosomal protein L30-like [Cucurbita pepo subsp. pepo] >KAG7022349.1 60S ribosomal protein L30 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 224.6 bits (571), Expect = 4.4e-55
Identity = 108/112 (96.43%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKTKKTHESINNRLALVMKSGK+TLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKNMPGDS 113
           EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIK++PG+S
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSLPGES 112

[Close]
BLAST of Sed0027344 vs. NCBI nr
Match: XP_030458554.1 (60S ribosomal protein L30 [Syzygium oleosum])

HSP 1 Score: 224.2 bits (570), Expect = 5.7e-55
Identity = 107/111 (96.40%), Postives = 111/111 (100.00%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKTKKTHESINNRLALVMKSGK+TLGYKTVLKTLRNSKGKL+IIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLVIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKNMPGD 112
           EYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSIIDPGDSDIIK+MPGD
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGD 111

[Close]
BLAST of Sed0027344 vs. NCBI nr
Match: PON59180.1 (Ribosomal protein [Parasponia andersonii] >POO01419.1 Ribosomal protein [Trema orientale])

HSP 1 Score: 224.2 bits (570), Expect = 5.7e-55
Identity = 108/111 (97.30%), Postives = 111/111 (100.00%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLK+LRNSKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKSLRNSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKNMPGD 112
           EYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSIIDPGDSDIIK+MPGD
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGD 111

[Close]
BLAST of Sed0027344 vs. ExPASy Swiss-Prot
Match: O49884 (60S ribosomal protein L30 OS=Lupinus luteus OX=3873 GN=RPL30 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 2.4e-56
Identity = 104/111 (93.69%), Postives = 110/111 (99.10%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKTKKTHESINNRLALVMKSGK+TLGYKTVLK+LR+SKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKNMPGD 112
           EYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSI+DPGDSDIIK +PGD
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIVDPGDSDIIKTLPGD 111

[Close]
BLAST of Sed0027344 vs. ExPASy Swiss-Prot
Match: Q9M5M6 (60S ribosomal protein L30 OS=Euphorbia esula OX=3993 GN=RPL30 PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 5.0e-54
Identity = 101/111 (90.99%), Postives = 110/111 (99.10%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKTKKTHESIN+RLALVMKSGKFTLGYKTVL++LR++KGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINSRLALVMKSGKFTLGYKTVLESLRSNKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKNMPGD 112
           EYYAMLAKVGVHHYNG+NVDLGTACGKY+RVCCLSIID GDSDIIK++PGD
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVCCLSIIDAGDSDIIKSIPGD 111

[Close]
BLAST of Sed0027344 vs. ExPASy Swiss-Prot
Match: Q9C8F7 (Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana OX=3702 GN=RPL30A PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.0e-50
Identity = 93/111 (83.78%), Postives = 108/111 (97.30%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKTKK+HE IN+RLALVMKSGK+TLGYK+VLK+LR+SKGKLI+I++NCPPLR+SEI
Sbjct: 1   MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKNMPGD 112
           EYYAMLAKVGVHHYN +NVDLGTACGKY+RV CLSI+DPGDSDIIK++PGD
Sbjct: 61  EYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLPGD 111

[Close]
BLAST of Sed0027344 vs. ExPASy Swiss-Prot
Match: Q8VZ19 (60S ribosomal protein L30-2 OS=Arabidopsis thaliana OX=3702 GN=RPL30B PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 5.8e-50
Identity = 92/111 (82.88%), Postives = 105/111 (94.59%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MV  KKTKK+HE IN+RLALVMKSGK+TLGYK+VLK+LR SKGKLI+I+ NCPPLR+SEI
Sbjct: 1   MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKNMPGD 112
           EYYAMLAKVGVHHYNG+NVDLGTACGKY+RV CLSI+DPGDSDIIK++PGD
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIPGD 111

[Close]
BLAST of Sed0027344 vs. ExPASy Swiss-Prot
Match: O48558 (60S ribosomal protein L30 OS=Zea mays OX=4577 GN=RPL30 PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 2.2e-49
Identity = 92/111 (82.88%), Postives = 104/111 (93.69%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVA KKTKK+ ++INN+L LVMKSGK+TLGYKTVL+TLRNSK KL+IIANNCPPLRKSEI
Sbjct: 1   MVATKKTKKSTDNINNKLQLVMKSGKYTLGYKTVLRTLRNSKSKLVIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKNMPGD 112
           EYYAMLAKV VHH++G+NVDLGTACGKY+RVCCLSIIDPGDSDIIK  PG+
Sbjct: 61  EYYAMLAKVTVHHFHGNNVDLGTACGKYFRVCCLSIIDPGDSDIIKTTPGE 111

[Close]
BLAST of Sed0027344 vs. ExPASy TrEMBL
Match: A0A6J1JJ11 (60S ribosomal protein L30-like OS=Cucurbita maxima OX=3661 GN=LOC111485536 PE=3 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.1e-55
Identity = 108/112 (96.43%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKTKKTHESINNRLALVMKSGK+TLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKNMPGDS 113
           EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIK++PG+S
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSLPGES 112

[Close]
BLAST of Sed0027344 vs. ExPASy TrEMBL
Match: A0A3Q7J0N1 (Ribosomal_L7Ae domain-containing protein OS=Solanum lycopersicum OX=4081 GN=101254162 PE=3 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.1e-55
Identity = 108/111 (97.30%), Postives = 111/111 (100.00%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKTKKTHESINNRLALVMKSGK+TLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKNMPGD 112
           EYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSIIDPGDSDIIK+MPGD
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGD 111

[Close]
BLAST of Sed0027344 vs. ExPASy TrEMBL
Match: A0A1U8ENE7 (60S ribosomal protein L30 OS=Capsicum annuum OX=4072 GN=LOC107848475 PE=3 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.1e-55
Identity = 108/111 (97.30%), Postives = 111/111 (100.00%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKTKKTHESINNRLALVMKSGK+TLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKNMPGD 112
           EYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSIIDPGDSDIIK+MPGD
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGD 111

[Close]
BLAST of Sed0027344 vs. ExPASy TrEMBL
Match: A0A6J1H9H7 (60S ribosomal protein L30-like OS=Cucurbita moschata OX=3662 GN=LOC111461321 PE=3 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.1e-55
Identity = 108/112 (96.43%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKTKKTHESINNRLALVMKSGK+TLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKNMPGDS 113
           EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIK++PG+S
Sbjct: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSLPGES 112

[Close]
BLAST of Sed0027344 vs. ExPASy TrEMBL
Match: A0A2P5CDP9 (Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_161070 PE=3 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 2.8e-55
Identity = 108/111 (97.30%), Postives = 111/111 (100.00%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLK+LRNSKGKLIIIANNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKSLRNSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKNMPGD 112
           EYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSIIDPGDSDIIK+MPGD
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGD 111

[Close]
BLAST of Sed0027344 vs. TAIR 10
Match: AT1G36240.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 199.5 bits (506), Expect = 1.4e-51
Identity = 93/111 (83.78%), Postives = 108/111 (97.30%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVAAKKTKK+HE IN+RLALVMKSGK+TLGYK+VLK+LR+SKGKLI+I++NCPPLR+SEI
Sbjct: 1   MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKNMPGD 112
           EYYAMLAKVGVHHYN +NVDLGTACGKY+RV CLSI+DPGDSDIIK++PGD
Sbjct: 61  EYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLPGD 111

[Close]
BLAST of Sed0027344 vs. TAIR 10
Match: AT1G77940.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 198.0 bits (502), Expect = 4.1e-51
Identity = 92/111 (82.88%), Postives = 105/111 (94.59%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MV  KKTKK+HE IN+RLALVMKSGK+TLGYK+VLK+LR SKGKLI+I+ NCPPLR+SEI
Sbjct: 1   MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKNMPGD 112
           EYYAMLAKVGVHHYNG+NVDLGTACGKY+RV CLSI+DPGDSDIIK++PGD
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIPGD 111

[Close]
BLAST of Sed0027344 vs. TAIR 10
Match: AT3G18740.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 195.3 bits (495), Expect = 2.7e-50
Identity = 91/111 (81.98%), Postives = 105/111 (94.59%), Query Frame = 0 

Query: 1   MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60
           MVA KK KK+HE IN+RLALVMKSGK+TLGYK+VLK+LR+SKGKLI+I++NCPPLR+SEI
Sbjct: 1   MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKNMPGD 112
           EYYAMLAKVGVH YNG+NVDLGTACGKY+RV CLSI+DPGDSDIIK +PGD
Sbjct: 61  EYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKTLPGD 111

The following BLAST results are available for this feature:
BLAST of Sed0027344 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038878626.12.0e-5597.3260S ribosomal protein L30 [Benincasa hispida][more]
XP_004251199.14.4e-5597.3060S ribosomal protein L30 [Solanum lycopersicum] >XP_015056853.1 60S ribosomal p... [more]
XP_022960585.14.4e-5596.4360S ribosomal protein L30-like [Cucurbita moschata] >XP_022988235.1 60S ribosoma... [more]
XP_030458554.15.7e-5596.4060S ribosomal protein L30 [Syzygium oleosum][more]
PON59180.15.7e-5597.30Ribosomal protein [Parasponia andersonii] >POO01419.1 Ribosomal protein [Trema o... [more]
BLAST of Sed0027344 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O498842.4e-5693.6960S ribosomal protein L30 OS=Lupinus luteus OX=3873 GN=RPL30 PE=3 SV=1[more]
Q9M5M65.0e-5490.9960S ribosomal protein L30 OS=Euphorbia esula OX=3993 GN=RPL30 PE=3 SV=1[more]
Q9C8F72.0e-5083.78Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana OX=3702 GN=RPL30A P... [more]
Q8VZ195.8e-5082.8860S ribosomal protein L30-2 OS=Arabidopsis thaliana OX=3702 GN=RPL30B PE=3 SV=1[more]
O485582.2e-4982.8860S ribosomal protein L30 OS=Zea mays OX=4577 GN=RPL30 PE=3 SV=1[more]
BLAST of Sed0027344 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JJ112.1e-5596.4360S ribosomal protein L30-like OS=Cucurbita maxima OX=3661 GN=LOC111485536 PE=3 ... [more]
A0A3Q7J0N12.1e-5597.30Ribosomal_L7Ae domain-containing protein OS=Solanum lycopersicum OX=4081 GN=1012... [more]
A0A1U8ENE72.1e-5597.3060S ribosomal protein L30 OS=Capsicum annuum OX=4072 GN=LOC107848475 PE=3 SV=1[more]
A0A6J1H9H72.1e-5596.4360S ribosomal protein L30-like OS=Cucurbita moschata OX=3662 GN=LOC111461321 PE=... [more]
A0A2P5CDP92.8e-5597.30Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_161070 PE=3 SV=... [more]
BLAST of Sed0027344 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G36240.11.4e-5183.78Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
AT1G77940.14.1e-5182.88Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
AT3G18740.12.7e-5081.98Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004038Ribosomal protein L7Ae/L30e/S12e/Gadd45PFAMPF01248Ribosomal_L7Aecoord: 13..105
e-value: 1.5E-23
score: 82.3
IPR02906450S ribosomal protein L30e-likeGENE3D3.30.1330.30coord: 2..108
e-value: 1.5E-53
score: 181.0
IPR02906450S ribosomal protein L30e-likeSUPERFAMILY55315L30e-likecoord: 13..106
IPR039109Ribosomal protein L30/YlxQPANTHERPTHR11449RIBOSOMAL PROTEIN L30coord: 1..112
NoneNo IPR availablePANTHERPTHR11449:SF2360S RIBOSOMAL PROTEIN L30coord: 1..112
IPR022991Ribosomal protein L30e, conserved sitePROSITEPS00709RIBOSOMAL_L30E_1coord: 24..48
IPR022991Ribosomal protein L30e, conserved sitePROSITEPS00993RIBOSOMAL_L30E_2coord: 80..100
IPR000231Ribosomal protein L30eHAMAPMF_00481Ribosomal_L30ecoord: 12..109
score: 21.343466

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0027344.1Sed0027344.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0022625 cytosolic large ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome