Sed0027301 (gene) Chayote v1

Overview


Name	Sed0027301
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Ycf20-like protein
Location	LG01: 65713291 .. 65716071 (+)
RNA-Seq Expression	Sed0027301
Synteny	Sed0027301

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCGAAAAGAAGCCGAGATTGAAAAAAGAAAAAAAAAATTCTCAATGCTTGGGCTTTCGATATGTGCTCTAATTTTTCAAATGCGAATGCACAAACTCGTCATTATCTTTTCTCCATCGACAATTGCAGTTCTTCATCTCCTTTCTCACAAAGCGGAAACTGGAATCCAGTTCTAGGTATTAATTAATTTCCCCCCAATTTTCGTTCATTTTTGTTTATGAATCTTTCAGTTTTTTCAATCCTACCGCCGGAGAAACATTTATTAATCTGTGAAACTCGTATTGATTTTCAAGTTTTCTGCCTTAATTTCGCTTGATTCTGACTGCCGAATCGAAAATGAGAGTTATAATTGATTCAACTGAGCCTGAAATTTCTTTCAATTTCTTACTTCGGTGGTCTTGTTTTAGTCGTTTCTATCGAATGTGGTTTGGATTGTAAACTCTTTTTTAGTGTCATACGTGTGCGAGGATTGATAATCTTCAATCTCTTTATTCCGAACTTGGAATTTGAAATACAAAGATGAGTTAAATGTAACTTGGGTTAATTAGAGGGTTAATTTTACTAATCATGAGAAATGTGTATTAGTGCTCTTGTATAAAGCACTATTGGGGGTTTTCTTCATCTTGGAGAGTGAGAGTAGAAACCCTAGCCACCTTTGAGAGTCCTGGTACATTCAATCAATGACATTATGATGGTGGATCGAAGAAGCTCAATCGATCCATAACAGTGGAGTAGGGACGTTCTCGAACCACTATAAATCTGGTGTGCTTTGTCTCTCTTCTCCATTTGATCCTTCTTTATTTTGTTTCAATTTCATCTCAATTTGGTTTGATCTTGGATTAGAGTTGCATAGATCTAGATTTTGTTATTACACCTAGTAATGGGAAGGTGGATATTGTTTTTTTTTTTTTTAAAAATATCCGTGGGTGTTAGGGTGAATTTACGCGCACTTCAACTGTTGTCACGCTATGTATGGTTTAACCTTACAATATTTGGATGTCAATGGAACATGTAGGAAATTAATTTCTAGGTAGGTGACTACCATGGATTGAGTTTATTACCCCTTAGTTACTTAAGACACTCTTGAATTTCCTGGCCTAAGGACGGGCGTGGTTATCTTTGTTCCATAAAAAAAAAATAAGACACTCTTGAATTTGAATCTATGTTTTCTTCTCATTGTTTTTTTGGTTCACCATCGAATTACAATTCCAATCCTCTGTGTTTCTATTAAAGTCCTACTGATTATAGACATTTCTCGATTTACACCGATTAAAAAAGCTTTCTCATAACCACCATGAATCCATGATAGCCTAATGGTCAATAAGAAATCAAAAGGTTATGAGTTCAATCTATGGTAGCCACCTACAAGTTTTCTGGACATTCAAATATTGTAGGGTTAAGCAGTATGTCTTGGGAGGGTAATCGAGGTTCACGTAAATTGACCCAGACACTTACCGATATCAAAAATAAAAATAAAAAGTTCTCTTGTATCATTTTAATGATAACCGTGGCCCTGTGGGAGCCTTGCATCATTTTTCATTGCCAAACTTGATCCTTTGTGTTCTACGTAAAAGTGAGTCTTATTTGATCAGTCACCTAAACCTTAAGTAAGCTTTTCTGTTGTGATCTCAGGTTCTCAACCTTTTATTCAGCCATATAGGAAGTGAAAATCTAATGGCACAGTCTGCAAGTTTAGTCTCTAGTAGCCTCCTAAAGTATGGTTTTACTCCCAAAATGAATGCTTCATATTGGAGATATGATATGATAAAATCACAACCATCCCCTCGTGGTTTTCATGTCAAAGCCGTGCAAGATACGGGAGGTCCTCGTAGGTTAGTTGATATCATTAGACTCGTTCCTGAGCTCTCGAGAAATTACTTTCGAAGTCCTTTGAAGAAGGCCCTTTTTGGAGGAATCTCATTGTTGGGTGGCTTTTATGTAGCACAAACTATCTCATTGTCATTTGGACCTTTAGGAGTAAATGATGTGATTGCTGCTGTGGTGTGCGCTCTGCTTACTGAGTACGTTACTCGATTTTATTACAGTCGACCGAAAGTAACGTTCCCTATTGCTCTACTCAACACCTTCAAAATGGGTTTCACTTATGGTCTCTTCATTGATGCTTTCAAACTGGCTAGTTAAATGCATTTGATGAAACCATTGAGGTAACTGGCATATTTACATTTGTAAAGTTCTACCCTTCTGTCTTCACTAATTTTGTTTCATATCTTTAAAGCTTGTTCTTATTGTTTTTAATGAAATTTTTTCCCCTCTTTATTTGTTTCCTCTGTATATTTTCATCTATAATTTGCACTGAAGAGTTAGTTCTGAGCTAATCACCCTCAAATGCAATTTAGTAACAGAGTTTTAGATAAAACAAAAGGCAACAGATTTGAATGGAATTGATGTCTTTTTTTAGTTCAGTTCTTATTCAATGGAGAATTGTTTGATTCAACTGCTCTTTTCCAAAAACCTGTTCTGATACCACGGGCATTGCTCCTTTTCTTTACCATCCCGTCTTACCGTCTCTGCTAGCGTCATCGACAATGTTTTTCGAACATTGGTGGTCTCGATCTGCTTTAACCTTGTCGAGCACGAGAATCTTGTTCTCCCATATTTTTCTTATCATACCATTGAGGGGATACCTATTTTTTTGGTCAACGGGTTATCTTCATCATTGGTTTATAGGCTTTATTTTCTTGCATTTATCTGTATCTATATTGCTGGGATGTATCGGCTTGTGATTATCAATATTCACCTTGATTCTCTTTTTTTTTTTAA

mRNA sequence

ATCGAAAAGAAGCCGAGATTGAAAAAAGAAAAAAAAAATTCTCAATGCTTGGGCTTTCGATATGTGCTCTAATTTTTCAAATGCGAATGCACAAACTCGTCATTATCTTTTCTCCATCGACAATTGCAGTTCTTCATCTCCTTTCTCACAAAGCGGAAACTGGAATCCAGTTCTAGGTTCTCAACCTTTTATTCAGCCATATAGGAAGTGAAAATCTAATGGCACAGTCTGCAAGTTTAGTCTCTAGTAGCCTCCTAAAGTATGGTTTTACTCCCAAAATGAATGCTTCATATTGGAGATATGATATGATAAAATCACAACCATCCCCTCGTGGTTTTCATGTCAAAGCCGTGCAAGATACGGGAGGTCCTCGTAGGTTAGTTGATATCATTAGACTCGTTCCTGAGCTCTCGAGAAATTACTTTCGAAGTCCTTTGAAGAAGGCCCTTTTTGGAGGAATCTCATTGTTGGGTGGCTTTTATGTAGCACAAACTATCTCATTGTCATTTGGACCTTTAGGAGTAAATGATGTGATTGCTGCTGTGGTGTGCGCTCTGCTTACTGAGTACGTTACTCGATTTTATTACAGTCGACCGAAAGTAACGTTCCCTATTGCTCTACTCAACACCTTCAAAATGGGTTTCACTTATGGTCTCTTCATTGATGCTTTCAAACTGGCTAGTTAAATGCATTTGATGAAACCATTGAGGTAACTGGCATATTTACATTTGTAAAGTTCTACCCTTCTGTCTTCACTAATTTTGTTTCATATCTTTAAAGCTTGTTCTTATTGTTTTTAATGAAATTTTTTCCCCTCTTTATTTGTTTCCTCTGTATATTTTCATCTATAATTTGCACTGAAGAGTTAGTTCTGAGCTAATCACCCTCAAATGCAATTTAGTAACAGAGTTTTAGATAAAACAAAAGGCAACAGATTTGAATGGAATTGATGTCTTTTTTTAGTTCAGTTCTTATTCAATGGAGAATTGTTTGATTCAACTGCTCTTTTCCAAAAACCTGTTCTGATACCACGGGCATTGCTCCTTTTCTTTACCATCCCGTCTTACCGTCTCTGCTAGCGTCATCGACAATGTTTTTCGAACATTGGTGGTCTCGATCTGCTTTAACCTTGTCGAGCACGAGAATCTTGTTCTCCCATATTTTTCTTATCATACCATTGAGGGGATACCTATTTTTTTGGTCAACGGGTTATCTTCATCATTGGTTTATAGGCTTTATTTTCTTGCATTTATCTGTATCTATATTGCTGGGATGTATCGGCTTGTGATTATCAATATTCACCTTGATTCTCTTTTTTTTTTTAA

Coding sequence (CDS)

ATGGCACAGTCTGCAAGTTTAGTCTCTAGTAGCCTCCTAAAGTATGGTTTTACTCCCAAAATGAATGCTTCATATTGGAGATATGATATGATAAAATCACAACCATCCCCTCGTGGTTTTCATGTCAAAGCCGTGCAAGATACGGGAGGTCCTCGTAGGTTAGTTGATATCATTAGACTCGTTCCTGAGCTCTCGAGAAATTACTTTCGAAGTCCTTTGAAGAAGGCCCTTTTTGGAGGAATCTCATTGTTGGGTGGCTTTTATGTAGCACAAACTATCTCATTGTCATTTGGACCTTTAGGAGTAAATGATGTGATTGCTGCTGTGGTGTGCGCTCTGCTTACTGAGTACGTTACTCGATTTTATTACAGTCGACCGAAAGTAACGTTCCCTATTGCTCTACTCAACACCTTCAAAATGGGTTTCACTTATGGTCTCTTCATTGATGCTTTCAAACTGGCTAGTTAA

Protein sequence

MAQSASLVSSSLLKYGFTPKMNASYWRYDMIKSQPSPRGFHVKAVQDTGGPRRLVDIIRLVPELSRNYFRSPLKKALFGGISLLGGFYVAQTISLSFGPLGVNDVIAAVVCALLTEYVTRFYYSRPKVTFPIALLNTFKMGFTYGLFIDAFKLAS

Homology

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BLAST of Sed0027301 vs. NCBI nr
Match: XP_004143642.1 (uncharacterized protein ycf20 [Cucumis sativus] >KGN50402.1 hypothetical protein Csa_000018 [Cucumis sativus])

HSP 1 Score: 278.5 bits (711), Expect = 3.5e-71
Identity = 141/156 (90.38%), Postives = 146/156 (93.59%), Query Frame = 0


Query: 1   MAQSASLVSSSLLKYGFTPKMNASYWRYDMIKSQPS-PRGFHVKAVQDTGGPRRLVDIIR 60
           MAQSASLV +SLL YGFTPKMN SYWRYDM+KS+PS PR F VKAVQDTGGPRRLVDIIR
Sbjct: 1   MAQSASLVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRSPLKKALFGGISLLGGFYVAQTISLSFGPLGVNDVIAAVVCALLTEYVT 120
           LVPELSRNYFRSP ++ALFGGISLLGGFYVAQTISLSFG LGVNDVIAAVVC LLTEYVT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYSRPKVTFPIALLNTFKMGFTYGLFIDAFKLAS 156
           RFYYSRPKVTFPIALLN FKMGFTYGLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156

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BLAST of Sed0027301 vs. NCBI nr
Match: KAG6579671.1 (hypothetical protein SDJN03_24119, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 274.6 bits (701), Expect = 5.1e-70
Identity = 136/155 (87.74%), Postives = 144/155 (92.90%), Query Frame = 0


Query: 1   MAQSASLVSSSLLKYGFTPKMNASYWRYDMIKSQPSPRGFHVKAVQDTGGPRRLVDIIRL 60
           MAQSASLVS+ LL Y FTP+ NASYWRYDMIKS+PSPR   +KAVQDTGGPRRLVDIIRL
Sbjct: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDMIKSRPSPRSLCIKAVQDTGGPRRLVDIIRL 60

Query: 61  VPELSRNYFRSPLKKALFGGISLLGGFYVAQTISLSFGPLGVNDVIAAVVCALLTEYVTR 120
           VPE+SRNYFRSP ++ALFGGISLLGGFYVAQTISLSFG LGVNDVIAAVVC LLTEYVTR
Sbjct: 61  VPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120

Query: 121 FYYSRPKVTFPIALLNTFKMGFTYGLFIDAFKLAS 156
           FYYSRPKVTFP+ALLN FKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

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BLAST of Sed0027301 vs. NCBI nr
Match: XP_022969949.1 (uncharacterized protein ycf20 [Cucurbita maxima] >XP_022969950.1 uncharacterized protein ycf20 [Cucurbita maxima])

HSP 1 Score: 274.2 bits (700), Expect = 6.7e-70
Identity = 136/155 (87.74%), Postives = 144/155 (92.90%), Query Frame = 0


Query: 1   MAQSASLVSSSLLKYGFTPKMNASYWRYDMIKSQPSPRGFHVKAVQDTGGPRRLVDIIRL 60
           MAQSASLVS+ LL Y FTP+ NASYWRYD+IKS+PSPR   +KAVQDTGGPRRLVDIIRL
Sbjct: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLGIKAVQDTGGPRRLVDIIRL 60

Query: 61  VPELSRNYFRSPLKKALFGGISLLGGFYVAQTISLSFGPLGVNDVIAAVVCALLTEYVTR 120
           VPELSRNYFRSP ++ALFGGISLLGGFYVAQTISLSFG LGVNDVIAAVVC LLTEYVTR
Sbjct: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120

Query: 121 FYYSRPKVTFPIALLNTFKMGFTYGLFIDAFKLAS 156
           FYYSRPKVTFP+ALLN FKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

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BLAST of Sed0027301 vs. NCBI nr
Match: XP_022928979.1 (uncharacterized protein ycf20 [Cucurbita moschata] >XP_022928980.1 uncharacterized protein ycf20 [Cucurbita moschata])

HSP 1 Score: 273.9 bits (699), Expect = 8.7e-70
Identity = 136/155 (87.74%), Postives = 144/155 (92.90%), Query Frame = 0


Query: 1   MAQSASLVSSSLLKYGFTPKMNASYWRYDMIKSQPSPRGFHVKAVQDTGGPRRLVDIIRL 60
           MAQSASLVS+ LL Y FTP+ NASYWRYD+IKS+PSPR   +KAVQDTGGPRRLVDIIRL
Sbjct: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRL 60

Query: 61  VPELSRNYFRSPLKKALFGGISLLGGFYVAQTISLSFGPLGVNDVIAAVVCALLTEYVTR 120
           VPELSRNYFRSP ++ALFGGISLLGGFYVAQTISLSFG LGVNDVIAAVVC LLTEYVTR
Sbjct: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120

Query: 121 FYYSRPKVTFPIALLNTFKMGFTYGLFIDAFKLAS 156
           FYYSRPKVTFP+ALLN FKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

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BLAST of Sed0027301 vs. NCBI nr
Match: XP_023549885.1 (uncharacterized protein LOC111808248 [Cucurbita pepo subsp. pepo] >XP_023549886.1 uncharacterized protein LOC111808248 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 273.1 bits (697), Expect = 1.5e-69
Identity = 135/155 (87.10%), Postives = 144/155 (92.90%), Query Frame = 0


Query: 1   MAQSASLVSSSLLKYGFTPKMNASYWRYDMIKSQPSPRGFHVKAVQDTGGPRRLVDIIRL 60
           MAQSASLVS+ LL Y FTP+ NASYWRYD+IKS+PSPR   +KAVQDTGGPRRLVDIIRL
Sbjct: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRL 60

Query: 61  VPELSRNYFRSPLKKALFGGISLLGGFYVAQTISLSFGPLGVNDVIAAVVCALLTEYVTR 120
           VPE+SRNYFRSP ++ALFGGISLLGGFYVAQTISLSFG LGVNDVIAAVVC LLTEYVTR
Sbjct: 61  VPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120

Query: 121 FYYSRPKVTFPIALLNTFKMGFTYGLFIDAFKLAS 156
           FYYSRPKVTFP+ALLN FKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

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BLAST of Sed0027301 vs. ExPASy Swiss-Prot
Match: Q1XDS2 (Uncharacterized protein ycf20 OS=Pyropia yezoensis OX=2788 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-08
Identity = 39/97 (40.21%), Postives = 54/97 (55.67%), Query Frame = 0


Query: 60  LVPELSRNYFRSPLKKALFGGISLLGGFYVAQTISLSFGPLGVNDVIAAVVCALLTEYVT 119
           L+  L+   + S L +   G ISLL GF+++  +S   G  G   +IAA +    TE  +
Sbjct: 13  LIKNLNNKLYYS-LSELTTGLISLLLGFFISTGLSTIPGQTGDWGIIAASLIVAATELTS 72

Query: 120 RFYYSRPK-VTFPIALLNTFKMGFTYGLFIDAFKLAS 156
           +  YS  K +   I L N FK+G TYGLF+DAFKL S
Sbjct: 73  KIVYSSHKQLNIKINLFNNFKIGITYGLFVDAFKLGS 108

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BLAST of Sed0027301 vs. ExPASy Swiss-Prot
Match: P72983 (Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll1509 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.4e-08
Identity = 35/105 (33.33%), Postives = 54/105 (51.43%), Query Frame = 0


Query: 53  RLVDIIRLVPELSRNYFRSPLKKALFGGISLLGGFYVAQTISLSFGPLGVNDVIAAVVCA 112
           RL  I+ +  +    +FR+P ++     +S L GF+V   ++ + G     DV+ A    
Sbjct: 5   RLNTIVEVRGQQLSQFFRNPWRRISLSLLSFLFGFFVGTAVATTAGQNSQWDVVCAAFIL 64

Query: 113 LLTEYVTRFYYSR--PKVTFPIALLNTFKMGFTYGLFIDAFKLAS 156
           L  E V R++Y R          +LN FKMG +Y LF++AFKL S
Sbjct: 65  LFCELVNRWFYRRGVKMGDLQAEVLNIFKMGVSYSLFLEAFKLGS 109

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BLAST of Sed0027301 vs. ExPASy Swiss-Prot
Match: P51214 (Uncharacterized protein ycf20 OS=Porphyra purpurea OX=2787 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.7e-07
Identity = 39/92 (42.39%), Postives = 52/92 (56.52%), Query Frame = 0


Query: 65  SRNYFRSPLKKALFGGISLLGGFYVAQTISLSFGPLGVNDVIAAVVCALLTEYVTRFYYS 124
           SR Y+   L +   G ISLL GF+++  +S   G  G   +IAA +     E V++  YS
Sbjct: 19  SRLYY--SLNELTAGLISLLLGFFISTGLSTIPGQTGDWGIIAASLIVAAIELVSKIVYS 78

Query: 125 -RPKVTFPIALLNTFKMGFTYGLFIDAFKLAS 156
            + K    I LLN  K+G TYGLF+DAFKL S
Sbjct: 79  NKKKYGVRINLLNNLKIGITYGLFVDAFKLGS 108

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BLAST of Sed0027301 vs. ExPASy Swiss-Prot
Match: Q9MUL5 (Uncharacterized protein ycf20 OS=Mesostigma viride OX=41882 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 7.8e-05
Identity = 37/110 (33.64%), Postives = 55/110 (50.00%), Query Frame = 0


Query: 56  DIIRLVPELSRNY-FRSPLKKALFGGISLLGGFYVAQTISLSFGPLGVNDVIAAVVCALL 115
           +I +L+    +NY    P+K  L     LL GF++A  ++  FG  G  DV+ A +   +
Sbjct: 12  NIFQLLDSKIQNYSINFPIKILL-----LLLGFFIATVLATVFGQTGDWDVLVAGILVAM 71

Query: 116 TEYVTRFYYSR----PKVTFPIALL-----NTFKMGFTYGLFIDAFKLAS 156
            E +    YS+     K  F I+ L     N  K+G  +GLF+DAFKL S
Sbjct: 72  IEILGNKMYSKKYISKKQVFDISFLSLIGINYIKIGLIFGLFVDAFKLGS 116

[Close]

BLAST of Sed0027301 vs. ExPASy TrEMBL
Match: A0A0A0KPS1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G172820 PE=3 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 1.7e-71
Identity = 141/156 (90.38%), Postives = 146/156 (93.59%), Query Frame = 0


Query: 1   MAQSASLVSSSLLKYGFTPKMNASYWRYDMIKSQPS-PRGFHVKAVQDTGGPRRLVDIIR 60
           MAQSASLV +SLL YGFTPKMN SYWRYDM+KS+PS PR F VKAVQDTGGPRRLVDIIR
Sbjct: 1   MAQSASLVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRSPLKKALFGGISLLGGFYVAQTISLSFGPLGVNDVIAAVVCALLTEYVT 120
           LVPELSRNYFRSP ++ALFGGISLLGGFYVAQTISLSFG LGVNDVIAAVVC LLTEYVT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYSRPKVTFPIALLNTFKMGFTYGLFIDAFKLAS 156
           RFYYSRPKVTFPIALLN FKMGFTYGLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156

[Close]

BLAST of Sed0027301 vs. ExPASy TrEMBL
Match: A0A6J1I440 (uncharacterized protein ycf20 OS=Cucurbita maxima OX=3661 GN=LOC111468994 PE=3 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 3.2e-70
Identity = 136/155 (87.74%), Postives = 144/155 (92.90%), Query Frame = 0


Query: 1   MAQSASLVSSSLLKYGFTPKMNASYWRYDMIKSQPSPRGFHVKAVQDTGGPRRLVDIIRL 60
           MAQSASLVS+ LL Y FTP+ NASYWRYD+IKS+PSPR   +KAVQDTGGPRRLVDIIRL
Sbjct: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLGIKAVQDTGGPRRLVDIIRL 60

Query: 61  VPELSRNYFRSPLKKALFGGISLLGGFYVAQTISLSFGPLGVNDVIAAVVCALLTEYVTR 120
           VPELSRNYFRSP ++ALFGGISLLGGFYVAQTISLSFG LGVNDVIAAVVC LLTEYVTR
Sbjct: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120

Query: 121 FYYSRPKVTFPIALLNTFKMGFTYGLFIDAFKLAS 156
           FYYSRPKVTFP+ALLN FKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of Sed0027301 vs. ExPASy TrEMBL
Match: A0A6J1ESY7 (uncharacterized protein ycf20 OS=Cucurbita moschata OX=3662 GN=LOC111435716 PE=3 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 4.2e-70
Identity = 136/155 (87.74%), Postives = 144/155 (92.90%), Query Frame = 0


Query: 1   MAQSASLVSSSLLKYGFTPKMNASYWRYDMIKSQPSPRGFHVKAVQDTGGPRRLVDIIRL 60
           MAQSASLVS+ LL Y FTP+ NASYWRYD+IKS+PSPR   +KAVQDTGGPRRLVDIIRL
Sbjct: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRL 60

Query: 61  VPELSRNYFRSPLKKALFGGISLLGGFYVAQTISLSFGPLGVNDVIAAVVCALLTEYVTR 120
           VPELSRNYFRSP ++ALFGGISLLGGFYVAQTISLSFG LGVNDVIAAVVC LLTEYVTR
Sbjct: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120

Query: 121 FYYSRPKVTFPIALLNTFKMGFTYGLFIDAFKLAS 156
           FYYSRPKVTFP+ALLN FKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]

BLAST of Sed0027301 vs. ExPASy TrEMBL
Match: A0A1S3CT33 (uncharacterized protein ycf20 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504644 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.6e-69
Identity = 137/156 (87.82%), Postives = 144/156 (92.31%), Query Frame = 0


Query: 1   MAQSASLVSSSLLKYGFTPKMNASYWRYDMIKSQPS-PRGFHVKAVQDTGGPRRLVDIIR 60
           MAQS SLV + LL YGF+ KMN+SYWRYDM+KS+PS PR F VKAVQDTGGPRRLVDIIR
Sbjct: 1   MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPELSRNYFRSPLKKALFGGISLLGGFYVAQTISLSFGPLGVNDVIAAVVCALLTEYVT 120
           LVPELSRNYFRSP ++ALFGGISLLGGFYVAQTISLSFG LGVNDVIAAVVC LLTEYVT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYSRPKVTFPIALLNTFKMGFTYGLFIDAFKLAS 156
           RFYYSRPKVTFPIALLN FKMGFTYGLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156

[Close]

BLAST of Sed0027301 vs. ExPASy TrEMBL
Match: A0A5D3BMH1 (Ycf20-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1728G00540 PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.5e-62
Identity = 124/136 (91.18%), Postives = 128/136 (94.12%), Query Frame = 0


Query: 21  MNASYWRYDMIKSQPS-PRGFHVKAVQDTGGPRRLVDIIRLVPELSRNYFRSPLKKALFG 80
           MN SYWRYDM+KS+PS PR F VKAVQDTGGPRRLVDIIRLVPELSRNYFRSP ++ALFG
Sbjct: 1   MNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFG 60

Query: 81  GISLLGGFYVAQTISLSFGPLGVNDVIAAVVCALLTEYVTRFYYSRPKVTFPIALLNTFK 140
           GISLLGGFYVAQTISLSFG LGVNDVIAAVVC LLTEYVTRFYYSRPKVTFPIALLN FK
Sbjct: 61  GISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFK 120

Query: 141 MGFTYGLFIDAFKLAS 156
           MGFTYGLFIDAFKLAS
Sbjct: 121 MGFTYGLFIDAFKLAS 136

[Close]

BLAST of Sed0027301 vs. TAIR 10
Match: AT5G43050.1 (Protein of unknown function (DUF565) )

HSP 1 Score: 188.7 bits (478), Expect = 3.4e-48
Identity = 94/116 (81.03%), Postives = 104/116 (89.66%), Query Frame = 0


Query: 42  VKAVQDTGG--PRRLVDIIRLVPELSRNYFRSPLKKALFGGISLLGGFYVAQTISLSFGP 101
           ++A+Q+T G  PRRL+DIIR VPE+SRNYF+ P ++ LFGGISLLGGFYVAQTISLSFG 
Sbjct: 43  IRALQETEGPTPRRLIDIIRSVPEISRNYFKKPSRRTLFGGISLLGGFYVAQTISLSFGA 102

Query: 102 LGVNDVIAAVVCALLTEYVTRFYYSRPKVTFPIALLNTFKMGFTYGLFIDAFKLAS 156
           LGVNDVIAAV+C LLTEYVTRFYYSR  VTFPIALLN FKMGFTYGLFIDAFKLAS
Sbjct: 103 LGVNDVIAAVLCVLLTEYVTRFYYSRTTVTFPIALLNNFKMGFTYGLFIDAFKLAS 158

[Close]

BLAST of Sed0027301 vs. TAIR 10
Match: AT1G65420.1 (Protein of unknown function (DUF565) )

HSP 1 Score: 43.1 bits (100), Expect = 2.3e-04
Identity = 27/80 (33.75%), Postives = 38/80 (47.50%), Query Frame = 0


Query: 83  LLGGFYVAQTISLSFGPLGVNDVIAAVVCALLTEYVTRFYYSRP-------KVTFPIALL 142
           LL GFY A  ++   G  G  DV+ A +     E +    Y +P       K+   +  +
Sbjct: 118 LLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGIGMLMYKKPSSSMFSGKLQSFVVFM 177

Query: 143 NTFKMGFTYGLFIDAFKLAS 156
           N +K G   GLF+DAFKL S
Sbjct: 178 NFWKAGVCLGLFVDAFKLGS 197

The following BLAST results are available for this feature:

BLAST of Sed0027301 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143642.1	3.5e-71	90.38	uncharacterized protein ycf20 [Cucumis sativus] >KGN50402.1 hypothetical protein...	[more]
KAG6579671.1	5.1e-70	87.74	hypothetical protein SDJN03_24119, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022969949.1	6.7e-70	87.74	uncharacterized protein ycf20 [Cucurbita maxima] >XP_022969950.1 uncharacterized...	[more]
XP_022928979.1	8.7e-70	87.74	uncharacterized protein ycf20 [Cucurbita moschata] >XP_022928980.1 uncharacteriz...	[more]
XP_023549885.1	1.5e-69	87.10	uncharacterized protein LOC111808248 [Cucurbita pepo subsp. pepo] >XP_023549886....	[more]

BLAST of Sed0027301 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1XDS2	2.0e-08	40.21	Uncharacterized protein ycf20 OS=Pyropia yezoensis OX=2788 GN=ycf20 PE=3 SV=1	[more]
P72983	4.4e-08	33.33	Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN...	[more]
P51214	1.7e-07	42.39	Uncharacterized protein ycf20 OS=Porphyra purpurea OX=2787 GN=ycf20 PE=3 SV=1	[more]
Q9MUL5	7.8e-05	33.64	Uncharacterized protein ycf20 OS=Mesostigma viride OX=41882 GN=ycf20 PE=3 SV=1	[more]

BLAST of Sed0027301 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPS1	1.7e-71	90.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G172820 PE=3 SV=1	[more]
A0A6J1I440	3.2e-70	87.74	uncharacterized protein ycf20 OS=Cucurbita maxima OX=3661 GN=LOC111468994 PE=3 S...	[more]
A0A6J1ESY7	4.2e-70	87.74	uncharacterized protein ycf20 OS=Cucurbita moschata OX=3662 GN=LOC111435716 PE=3...	[more]
A0A1S3CT33	3.6e-69	87.82	uncharacterized protein ycf20 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504644...	[more]
A0A5D3BMH1	2.5e-62	91.18	Ycf20-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]

BLAST of Sed0027301 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43050.1	3.4e-48	81.03	Protein of unknown function (DUF565)	[more]
AT1G65420.1	2.3e-04	33.75	Protein of unknown function (DUF565)	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007572	Uncharacterised protein family Ycf20	PFAM	PF04483	DUF565	coord: 101..155 e-value: 5.1E-18 score: 65.3
IPR007572	Uncharacterised protein family Ycf20	PANTHER	PTHR33787	FAMILY NOT NAMED	coord: 1..155
None	No IPR available	PANTHER	PTHR33787:SF5	YCF20-LIKE PROTEIN	coord: 1..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0027301.1	Sed0027301.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane