Sed0027226 (gene) Chayote v1

Overview
NameSed0027226
Typegene
OrganismSechium edule (Chayote v1)
DescriptionCCHC-type domain-containing protein
LocationLG14: 6426090 .. 6426413 (+)
RNA-Seq ExpressionSed0027226
SyntenySed0027226
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAAAATTGAATGGGTAAAAGATTACCTCTCGAATTTTCAAAGTGCCAATCAAGGAGCTATTCGTTCATCTCATTATGCGGGTCCTCCTAGAGATCTGAATGTTGGTAGCTATTGGCGCTTGCCTGAGGCTGGTCAGTTTGTCTTGAACGTAGATGCAACATGCTCAAAAAGTTGGAACCGAGTTGGCCTTGGGGTCGTCATCTGGGATCATTGCGGTAAGTGTGTGATGGCGTCGGCTAACTTTCATCACTCCCAGCTAAATGCATTCTCAGCTGACGCTCTAGCCTTGTTGTTTGGCCTGAGGTTGGGGGGTGAGTAG

mRNA sequence

ATGGACAAAATTGAATGGGTAAAAGATTACCTCTCGAATTTTCAAAGTGCCAATCAAGGAGCTATTCGTTCATCTCATTATGCGGGTCCTCCTAGAGATCTGAATGTTGGTAGCTATTGGCGCTTGCCTGAGGCTGGTCAGTTTGTCTTGAACGTAGATGCAACATGCTCAAAAAGTTGGAACCGAGTTGGCCTTGGGGTCGTCATCTGGGATCATTGCGGTAAGTGTGTGATGGCGTCGGCTAACTTTCATCACTCCCAGCTAAATGCATTCTCAGCTGACGCTCTAGCCTTGTTGTTTGGCCTGAGGTTGGGGGGTGAGTAG

Coding sequence (CDS)

ATGGACAAAATTGAATGGGTAAAAGATTACCTCTCGAATTTTCAAAGTGCCAATCAAGGAGCTATTCGTTCATCTCATTATGCGGGTCCTCCTAGAGATCTGAATGTTGGTAGCTATTGGCGCTTGCCTGAGGCTGGTCAGTTTGTCTTGAACGTAGATGCAACATGCTCAAAAAGTTGGAACCGAGTTGGCCTTGGGGTCGTCATCTGGGATCATTGCGGTAAGTGTGTGATGGCGTCGGCTAACTTTCATCACTCCCAGCTAAATGCATTCTCAGCTGACGCTCTAGCCTTGTTGTTTGGCCTGAGGTTGGGGGGTGAGTAG

Protein sequence

MDKIEWVKDYLSNFQSANQGAIRSSHYAGPPRDLNVGSYWRLPEAGQFVLNVDATCSKSWNRVGLGVVIWDHCGKCVMASANFHHSQLNAFSADALALLFGLRLGGE
Homology
BLAST of Sed0027226 vs. NCBI nr
Match: TXG53482.1 (hypothetical protein EZV62_022651 [Acer yangbiense])

HSP 1 Score: 61.6 bits (148), Expect = 4.7e-06
Identity = 35/103 (33.98%), Postives = 54/103 (52.43%), Query Frame = 0

Query: 2   DKIEWVKDYLSNFQSANQGAIRSSHYAGPPRDLNVGSYWRLPEAGQFVLNVDATCSKSWN 61
           D   W  DY+  F+ AN   +     AG PR +     W  P+ G F +N DA    + N
Sbjct: 553 DVFAWASDYIGEFRMAN---LVEKGPAGLPRPV-ARIRWSKPDIGSFKINTDAAIKVANN 612

Query: 62  RVGLGVVIWDHCGKCVMASANFHHSQLNAFSADALALLFGLRL 105
           +VG+G +I D  GK ++A+     +  +   A+A+A+LFGLR+
Sbjct: 613 QVGVGAIIRDSGGKVMVAAVQRMDACYDPSVAEAVAILFGLRV 651

BLAST of Sed0027226 vs. NCBI nr
Match: PON90739.1 (Ribonuclease H-like domain containing protein [Trema orientale])

HSP 1 Score: 61.2 bits (147), Expect = 6.1e-06
Identity = 36/102 (35.29%), Postives = 48/102 (47.06%), Query Frame = 0

Query: 1   MDKIEWVKDYLSNFQSANQGAIRSSHYAGPPRDLNVGSYWRLPEAGQFVLNVDATCSKSW 60
           MD   W  +YL  FQ+A Q     S     PR +     W+ P    + LNVDA  S+S 
Sbjct: 1   MDTFTWCLNYLREFQTAQQQRASVSSTQSAPRPIK----WQPPSTHGYKLNVDAAISESQ 60

Query: 61  NRVGLGVVIWDHCGKCVMASANFHHSQLNAFSADALALLFGL 103
             VG G +I D  G  + A A   H+ L   +A+  AL FG+
Sbjct: 61  RCVGFGAIIRDTTGFVLAAVAKKFHNPLKPKTAEVAALSFGI 98

BLAST of Sed0027226 vs. NCBI nr
Match: XP_024628663.1 (uncharacterized protein LOC112417327 [Medicago truncatula])

HSP 1 Score: 55.8 bits (133), Expect = 2.6e-04
Identity = 33/101 (32.67%), Postives = 49/101 (48.51%), Query Frame = 0

Query: 7   VKDYLSNFQSANQGAIRSSHYAGPPRDLNVGSYWRLPEAGQFVLNVDATCSKSWNRVGLG 66
           V+D   N  +  Q A  S + A   +     + WR P+ G F  NVDA   K  NRVG+G
Sbjct: 6   VRDRGLNLLTGWQNAQDSRNQADVQQQRIDDTVWRKPDEGHFKCNVDAAFFKESNRVGIG 65

Query: 67  VVIWDHCGKCVMASANFHHSQLNAFSADALALLFGLRLGGE 108
           + I D  G+ V A  ++    L+    +A+ LL+ +R   E
Sbjct: 66  ICIRDDSGRLVKARTSWSTPLLDVPEGEAIGLLYAIRWAKE 106

BLAST of Sed0027226 vs. NCBI nr
Match: XP_024626530.1 (uncharacterized protein LOC112416549 [Medicago truncatula])

HSP 1 Score: 55.5 bits (132), Expect = 3.4e-04
Identity = 33/101 (32.67%), Postives = 49/101 (48.51%), Query Frame = 0

Query: 7   VKDYLSNFQSANQGAIRSSHYAGPPRDLNVGSYWRLPEAGQFVLNVDATCSKSWNRVGLG 66
           V+D   N  +  Q A  S + A   +     + WR P+ G F  NVDA   K  NRVG+G
Sbjct: 6   VRDRGLNLLTGWQNAQDSRNRADVQQQRIDDTVWRKPDEGHFKCNVDAAFFKERNRVGIG 65

Query: 67  VVIWDHCGKCVMASANFHHSQLNAFSADALALLFGLRLGGE 108
           + I D  G+ V A  ++    L+    +A+ LL+ +R   E
Sbjct: 66  ICIRDDSGRLVKARTSWSMPLLDVPEGEAIGLLYAIRWAKE 106

BLAST of Sed0027226 vs. NCBI nr
Match: TXG67924.1 (hypothetical protein EZV62_009199 [Acer yangbiense])

HSP 1 Score: 53.9 bits (128), Expect = 9.8e-04
Identity = 29/102 (28.43%), Postives = 49/102 (48.04%), Query Frame = 0

Query: 6   WVKDYLSNFQSANQGAIRSSHYAGPPRDLNVGSYWRLPEAGQFVLNVDATCSKSWNRVGL 65
           W  ++L  F+ A+      SH +    D  V   W  P  G F +N DA        +G+
Sbjct: 262 WASNFLDKFRGASVSRPPISHSSSVSPDSVV--KWAPPPTGSFKINSDAAVRVDSQLIGV 321

Query: 66  GVVIWDHCGKCVMASANFHHSQLNAFSADALALLFGLRLGGE 108
           G+V+ D CG+   +S N  ++  +    +A+A+  G+RL G+
Sbjct: 322 GIVVKDSCGRVCASSVNRINACSSPSVVEAIAIRNGIRLAGD 361

BLAST of Sed0027226 vs. ExPASy TrEMBL
Match: A0A5C7HA98 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_022651 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.3e-06
Identity = 35/103 (33.98%), Postives = 54/103 (52.43%), Query Frame = 0

Query: 2   DKIEWVKDYLSNFQSANQGAIRSSHYAGPPRDLNVGSYWRLPEAGQFVLNVDATCSKSWN 61
           D   W  DY+  F+ AN   +     AG PR +     W  P+ G F +N DA    + N
Sbjct: 553 DVFAWASDYIGEFRMAN---LVEKGPAGLPRPV-ARIRWSKPDIGSFKINTDAAIKVANN 612

Query: 62  RVGLGVVIWDHCGKCVMASANFHHSQLNAFSADALALLFGLRL 105
           +VG+G +I D  GK ++A+     +  +   A+A+A+LFGLR+
Sbjct: 613 QVGVGAIIRDSGGKVMVAAVQRMDACYDPSVAEAVAILFGLRV 651

BLAST of Sed0027226 vs. ExPASy TrEMBL
Match: A0A5C7IG10 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_009199 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.7e-04
Identity = 29/102 (28.43%), Postives = 49/102 (48.04%), Query Frame = 0

Query: 6   WVKDYLSNFQSANQGAIRSSHYAGPPRDLNVGSYWRLPEAGQFVLNVDATCSKSWNRVGL 65
           W  ++L  F+ A+      SH +    D  V   W  P  G F +N DA        +G+
Sbjct: 262 WASNFLDKFRGASVSRPPISHSSSVSPDSVV--KWAPPPTGSFKINSDAAVRVDSQLIGV 321

Query: 66  GVVIWDHCGKCVMASANFHHSQLNAFSADALALLFGLRLGGE 108
           G+V+ D CG+   +S N  ++  +    +A+A+  G+RL G+
Sbjct: 322 GIVVKDSCGRVCASSVNRINACSSPSVVEAIAIRNGIRLAGD 361

BLAST of Sed0027226 vs. ExPASy TrEMBL
Match: A0A2Z6MRJ3 (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_274760 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 8.1e-04
Identity = 26/64 (40.62%), Postives = 41/64 (64.06%), Query Frame = 0

Query: 40  WRLPEAGQFVLNVDATCSKSWNRVGLGVVIWDHCGKCVMASANFHHSQLNAFSADALALL 99
           W  P+AG +  NVDA+ S+S N+VG+GV I D+ G+ V+A   ++   L+  + +AL LL
Sbjct: 762 WTKPDAGTWKCNVDASFSRSRNKVGIGVCIRDNQGQFVLAKTEWYSPILDVDTGEALGLL 821

Query: 100 FGLR 104
             L+
Sbjct: 822 SALK 825

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TXG53482.14.7e-0633.98hypothetical protein EZV62_022651 [Acer yangbiense][more]
PON90739.16.1e-0635.29Ribonuclease H-like domain containing protein [Trema orientale][more]
XP_024628663.12.6e-0432.67uncharacterized protein LOC112417327 [Medicago truncatula][more]
XP_024626530.13.4e-0432.67uncharacterized protein LOC112416549 [Medicago truncatula][more]
TXG67924.19.8e-0428.43hypothetical protein EZV62_009199 [Acer yangbiense][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5C7HA982.3e-0633.98CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_02265... [more]
A0A5C7IG104.7e-0428.43Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_009199 PE=4 SV=1[more]
A0A2Z6MRJ38.1e-0440.63Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_274760 PE=4 SV... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 51..104
e-value: 1.3E-6
score: 28.2

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0027226.1Sed0027226.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity