Sed0027224 (gene) Chayote v1

Overview


Name	Sed0027224
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Ty3-gypsy retrotransposon protein
Location	LG02: 30366310 .. 30366564 (-)
RNA-Seq Expression	Sed0027224
Synteny	Sed0027224

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGTTATGATGGCTGGTGATGGAGGCGATGATCGAATGGCAGAGTTTGAAAGAAAGCTCGAGCAGATGATGAAAACAATTGAGGAAAGAGACTTAGAGATAGCTTACCTAAAAAATCAAATGCAGAACCGAGAGACGGCTGAATCAAGCCAGAGTCTACATGAGAGAGTTAATGATAAAGGAAAGAACCTTCTCTTTGAGGCACAACCACAACTGCACTCAACCCCAGTCGCTTCCTTATCTGTCCAGTAG

mRNA sequence

ATGTCTGTTATGATGGCTGGTGATGGAGGCGATGATCGAATGGCAGAGTTTGAAAGAAAGCTCGAGCAGATGATGAAAACAATTGAGGAAAGAGACTTAGAGATAGCTTACCTAAAAAATCAAATGCAGAACCGAGAGACGGCTGAATCAAGCCAGAGTCTACATGAGAGAGTTAATGATAAAGGAAAGAACCTTCTCTTTGAGGCACAACCACAACTGCACTCAACCCCAGTCGCTTCCTTATCTGTCCAGTAG

Coding sequence (CDS)

ATGTCTGTTATGATGGCTGGTGATGGAGGCGATGATCGAATGGCAGAGTTTGAAAGAAAGCTCGAGCAGATGATGAAAACAATTGAGGAAAGAGACTTAGAGATAGCTTACCTAAAAAATCAAATGCAGAACCGAGAGACGGCTGAATCAAGCCAGAGTCTACATGAGAGAGTTAATGATAAAGGAAAGAACCTTCTCTTTGAGGCACAACCACAACTGCACTCAACCCCAGTCGCTTCCTTATCTGTCCAGTAG

Protein sequence

MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSLHERVNDKGKNLLFEAQPQLHSTPVASLSVQ

Homology

[Close]

BLAST of Sed0027224 vs. NCBI nr
Match: XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 2.8e-14
Identity = 52/84 (61.90%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 1   MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSLHERVND 60
           MSVMMA    +  MAE ERK+  +MK ++ERD EIA LK QMQ RETAESSQ+   +V+D
Sbjct: 82  MSVMMADVAVETAMAEMERKINLLMKVVDERDHEIAALKEQMQTRETAESSQTPVVKVDD 141

Query: 61  KGKNLLFEAQPQLHSTPVASLSVQ 85
           KGKN++ E QPQ  ST VASLSVQ
Sbjct: 142 KGKNVVQENQPQQQSTSVASLSVQ 165

[Close]

BLAST of Sed0027224 vs. NCBI nr
Match: XP_031742032.1 (uncharacterized protein LOC116404025 [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 2.8e-14
Identity = 52/84 (61.90%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 1   MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSLHERVND 60
           MSVMMA    +  MAE ERK+  +MK ++ERD EIA LK QMQ RETAESSQ+   +V+D
Sbjct: 82  MSVMMADVAVETAMAEMERKINLLMKVVDERDHEIAALKEQMQTRETAESSQTPVVKVDD 141

Query: 61  KGKNLLFEAQPQLHSTPVASLSVQ 85
           KGKN++ E QPQ  ST VASLSVQ
Sbjct: 142 KGKNVVQENQPQQQSTSVASLSVQ 165

[Close]

BLAST of Sed0027224 vs. NCBI nr
Match: XP_031742199.1 (uncharacterized protein LOC105435721 [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 2.8e-14
Identity = 52/84 (61.90%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 1   MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSLHERVND 60
           MSVMMA    +  MAE ERK+  +MK ++ERD EIA LK QMQ RETAESSQ+   +V+D
Sbjct: 82  MSVMMADVAVETAMAEMERKINLLMKVVDERDHEIAALKEQMQTRETAESSQTPVVKVDD 141

Query: 61  KGKNLLFEAQPQLHSTPVASLSVQ 85
           KGKN++ E QPQ  ST VASLSVQ
Sbjct: 142 KGKNVVQENQPQQQSTSVASLSVQ 165

[Close]

BLAST of Sed0027224 vs. NCBI nr
Match: XP_031735972.1 (uncharacterized protein LOC116401693 [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 2.8e-14
Identity = 52/84 (61.90%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 1   MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSLHERVND 60
           MSVMMA    +  MAE ERK+  +MK ++ERD EIA LK QMQ RETAESSQ+   +V+D
Sbjct: 82  MSVMMADVAVETAMAEMERKINLLMKVVDERDHEIAALKEQMQTRETAESSQTPVVKVDD 141

Query: 61  KGKNLLFEAQPQLHSTPVASLSVQ 85
           KGKN++ E QPQ  ST VASLSVQ
Sbjct: 142 KGKNVVQENQPQQQSTSVASLSVQ 165

[Close]

BLAST of Sed0027224 vs. NCBI nr
Match: XP_031737053.1 (uncharacterized protein LOC116402138 [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 2.8e-14
Identity = 52/84 (61.90%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 1   MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSLHERVND 60
           MSVMMA    +  MAE ERK+  +MK ++ERD EIA LK QMQ RETAESSQ+   +V+D
Sbjct: 82  MSVMMADVAVETAMAEMERKINLLMKVVDERDHEIAALKEQMQTRETAESSQTPVVKVDD 141

Query: 61  KGKNLLFEAQPQLHSTPVASLSVQ 85
           KGKN++ E QPQ  ST VASLSVQ
Sbjct: 142 KGKNVVQENQPQQQSTSVASLSVQ 165

[Close]

BLAST of Sed0027224 vs. ExPASy TrEMBL
Match: A0A5A7TYE9 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold236G00410 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.2e-12
Identity = 48/84 (57.14%), Postives = 58/84 (69.05%), Query Frame = 0


Query: 1   MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSLHERVND 60
           MSVMMA    +  MAE ERK+  +MK +EERD EI  L+ QM+ RETAESSQ+   +  D
Sbjct: 59  MSVMMADITAEAAMAEMERKINFLMKVVEERDHEITALREQMRTRETAESSQTPVVKATD 118

Query: 61  KGKNLLFEAQPQLHSTPVASLSVQ 85
           KGKN++ E QPQ  S  VASLSVQ
Sbjct: 119 KGKNVVQENQPQQQSVSVASLSVQ 142

[Close]

BLAST of Sed0027224 vs. ExPASy TrEMBL
Match: A0A5D3BY54 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001700 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.9e-12
Identity = 48/84 (57.14%), Postives = 58/84 (69.05%), Query Frame = 0


Query: 1   MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSLHERVND 60
           MSVMMA    +  MAE ERK+  +MK +EERD EI  L+ QM+ RETAESSQ+   +  D
Sbjct: 82  MSVMMADITPEAAMAEMERKINFLMKAVEERDHEIIALREQMRTRETAESSQTPIVKATD 141

Query: 61  KGKNLLFEAQPQLHSTPVASLSVQ 85
           KGKN++ E QPQ  S  VASLSVQ
Sbjct: 142 KGKNVVQENQPQQQSVSVASLSVQ 165

[Close]

BLAST of Sed0027224 vs. ExPASy TrEMBL
Match: A0A5A7VDN4 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold381G00050 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.3e-12
Identity = 47/84 (55.95%), Postives = 58/84 (69.05%), Query Frame = 0


Query: 1   MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSLHERVND 60
           MSVMMA    +  MAE ERK+  +MK +EERD EI  L+ QM+ RETAESSQ+   +  D
Sbjct: 35  MSVMMADITAEAAMAEMERKINFLMKAVEERDHEITALREQMRTRETAESSQTPVVKATD 94

Query: 61  KGKNLLFEAQPQLHSTPVASLSVQ 85
           KGKN++ + QPQ  S  VASLSVQ
Sbjct: 95  KGKNVVQKNQPQQQSVSVASLSVQ 118

[Close]

BLAST of Sed0027224 vs. ExPASy TrEMBL
Match: A0A5A7VCU1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00120 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 8.3e-12
Identity = 47/84 (55.95%), Postives = 56/84 (66.67%), Query Frame = 0


Query: 1   MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSLHERVND 60
           MSVMM     +  MAE ERK+  +MK +EERD EI  L+ QMQ RET ESSQ+   +  D
Sbjct: 110 MSVMMTDITAEAVMAEMERKINFLMKVVEERDHEITALREQMQTRETVESSQTSVVKATD 169

Query: 61  KGKNLLFEAQPQLHSTPVASLSVQ 85
           KGKN++ E QPQ  S  VASLSVQ
Sbjct: 170 KGKNVVQENQPQQQSVSVASLSVQ 193

[Close]

BLAST of Sed0027224 vs. ExPASy TrEMBL
Match: A0A5D3DH20 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14792G00010 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.1e-11
Identity = 47/84 (55.95%), Postives = 58/84 (69.05%), Query Frame = 0


Query: 1   MSVMMAGDGGDDRMAEFERKLEQMMKTIEERDLEIAYLKNQMQNRETAESSQSLHERVND 60
           MSVMMA    +  MAE +RK+  +MK +EERD EI  L+ QM+ RETAESSQ+   +  D
Sbjct: 35  MSVMMADITTEAAMAEMKRKINFLMKVVEERDHEITALREQMRTRETAESSQTPIVKATD 94

Query: 61  KGKNLLFEAQPQLHSTPVASLSVQ 85
           KGKN++ E QPQ  S  VASLSVQ
Sbjct: 95  KGKNVVQENQPQQQSVSVASLSVQ 118

The following BLAST results are available for this feature:

BLAST of Sed0027224 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031739134.1	2.8e-14	61.90	uncharacterized protein LOC116402863 [Cucumis sativus]	[more]
XP_031742032.1	2.8e-14	61.90	uncharacterized protein LOC116404025 [Cucumis sativus]	[more]
XP_031742199.1	2.8e-14	61.90	uncharacterized protein LOC105435721 [Cucumis sativus]	[more]
XP_031735972.1	2.8e-14	61.90	uncharacterized protein LOC116401693 [Cucumis sativus]	[more]
XP_031737053.1	2.8e-14	61.90	uncharacterized protein LOC116402138 [Cucumis sativus]	[more]

BLAST of Sed0027224 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0027224 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TYE9	2.2e-12	57.14	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3BY54	4.9e-12	57.14	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7VDN4	6.3e-12	55.95	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7VCU1	8.3e-12	55.95	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DH20	1.1e-11	55.95	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Sed0027224 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 14..34

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0027224.1	Sed0027224.1	mRNA