Sed0027189 (gene) Chayote v1

Overview


Name	Sed0027189
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG03: 5111524 .. 5111861 (-)
RNA-Seq Expression	Sed0027189
Synteny	Sed0027189

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCCCACACTTCACAACCACTGCTATTCAAGCAAGTAGCTACCAATTTTGGCTACAAGCTGAACGCATTCTGAACGGGATTTATCTTACGTTATGTGCAAAATCAACGTAACCTAATTCTCATACGTAAATGGAACATCAGAAATACCAGGGATAACATGAAGCGGCTCGAATGGCCAGCCTCCGTGTTCGATTAACTGTCAGCAAAACGCCGTCGGAAAACCCTCCTCTATGAGGGAATCCGTTGAGATGCAGAAACACAGAGAAACGGAGCAATTCCAAAACAGAAGATTGCCCCCGTCAAAACAGTTCGATCAGGCGAGAAATAAACCCTAA

mRNA sequence

ATGATCCCACACTTCACAACCACTGCTATTCAAGCAAGTAGCTACCAATTTTGGCTACAAGCTGAACGCATTCTGAACGGGATTTATCTTACGTTATGTGCAAAATCAACCGGCTCGAATGGCCAGCCTCCGTGTTCGATTAACTGTCAGCAAAACGCCGTCGGAAAACCCTCCTCTATGAGGGAATCCGTTGAGATGCAGAAACACAGAGAAACGGAGCAATTCCAAAACAGAAGATTGCCCCCGTCAAAACAGTTCGATCAGGCGAGAAATAAACCCTAA

Coding sequence (CDS)

ATGATCCCACACTTCACAACCACTGCTATTCAAGCAAGTAGCTACCAATTTTGGCTACAAGCTGAACGCATTCTGAACGGGATTTATCTTACGTTATGTGCAAAATCAACCGGCTCGAATGGCCAGCCTCCGTGTTCGATTAACTGTCAGCAAAACGCCGTCGGAAAACCCTCCTCTATGAGGGAATCCGTTGAGATGCAGAAACACAGAGAAACGGAGCAATTCCAAAACAGAAGATTGCCCCCGTCAAAACAGTTCGATCAGGCGAGAAATAAACCCTAA

Protein sequence

MIPHFTTTAIQASSYQFWLQAERILNGIYLTLCAKSTGSNGQPPCSINCQQNAVGKPSSMRESVEMQKHRETEQFQNRRLPPSKQFDQARNKP

Homology

[Close]

BLAST of Sed0027189 vs. NCBI nr
Match: KGN50992.1 (hypothetical protein Csa_009144 [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 1.4e-14
Identity = 50/81 (61.73%), Postives = 57/81 (70.37%), Query Frame = 0


Query: 2   IPHFTTTAIQASSYQFWLQAERILNGIYLTLCAKSTGSNG--------QPPCSINC---Q 61
           + +FTTT IQASSYQF  + ERIL GIYL LCAKS   N         +PPCSINC   Q
Sbjct: 74  LSYFTTTGIQASSYQFGYKLERILKGIYLILCAKSIYPNSHTGLTVVLRPPCSINCRFGQ 133

Query: 62  QNAVGKPSSMRESVEMQKHRE 72
           QN +GKPSSMRESVEM+K +E
Sbjct: 134 QNTLGKPSSMRESVEMRKDKE 154

[Close]

BLAST of Sed0027189 vs. ExPASy TrEMBL
Match: A0A0A0KRK5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G387440 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.8e-15
Identity = 50/81 (61.73%), Postives = 57/81 (70.37%), Query Frame = 0


Query: 2   IPHFTTTAIQASSYQFWLQAERILNGIYLTLCAKSTGSNG--------QPPCSINC---Q 61
           + +FTTT IQASSYQF  + ERIL GIYL LCAKS   N         +PPCSINC   Q
Sbjct: 74  LSYFTTTGIQASSYQFGYKLERILKGIYLILCAKSIYPNSHTGLTVVLRPPCSINCRFGQ 133

Query: 62  QNAVGKPSSMRESVEMQKHRE 72
           QN +GKPSSMRESVEM+K +E
Sbjct: 134 QNTLGKPSSMRESVEMRKDKE 154

The following BLAST results are available for this feature:

BLAST of Sed0027189 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50992.1	1.4e-14	61.73	hypothetical protein Csa_009144 [Cucumis sativus]	[more]

BLAST of Sed0027189 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0027189 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRK5	6.8e-15	61.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G387440 PE=4 SV=1	[more]

BLAST of Sed0027189 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0027189.1	Sed0027189.1	mRNA