Sed0027177 (gene) Chayote v1

Overview


Name	Sed0027177
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Small nuclear ribonucleoprotein-associated protein
Location	LG10: 215211 .. 219502 (-)
RNA-Seq Expression	Sed0027177
Synteny	Sed0027177

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGATGTCTAAGAGTTCGAAGATGCTGCAGTACGTTAACTACCGGATGAGGGTTACGATCCAAGATGGTCGCCAATTGGTTGGCAAGTTCATGGCCTTCGATCGCCACATGAACCTCGTCCTCGGCGACTGCGAGGAGTTCCGCAAGCTTCCCCCGGCCAAGGGTAAGAAGACCAACGAGGAACGCGACGAGCGCCGCACCCTTGGCCTCGTTCTTCTCCGCGGCGAAGAGGTCATTTCCATGACTGTTGAGGGTCCTCCGCCTGCTGAAGACTCCCGTGCTAAGGCCGTCAATGCCGCTGCCATGGCTGGCCCTGGTATTGGCCGTGCCGCCGGGAGGGGTATCCCCACTGCCCCTCTTGTTCAAGCCCAGCCTGGTCTCTCTGGCCCTGTTCGTGGTGTCGGCAGTCCCGCTCCCGGGATGATGCAGCCTCAAATCTCTCGCCCGCCTATCCCTCAGATGTCTGCCCCCCCAATGTCATATCCGCCTGCTCCCATTATCCGTCCGCCTTCTCAGATCCCAATGTTCCCAGGCCAAGGTCCACCTCCAGTTGGGAGAGGAATGCCTCCTCCGGGGCCTCCACCACAATTCTCAGCGGCCAGACCCGGGGTGCCCCCACCACAGTTCCCGGGTCCTCCTCAATTTGCGCAGAGACCCATGGGACCTCCACCAACCGGGCAGATGATGAGAGGACCTCCACCTCCACCCAGGCCTGGCATGACAGGTCCTCCGCCTCGACCTGGGATGCCTCCTCCGCCCGGTGGCCAAGTTCCTGTTTACGGACCACCTCGTCCTGGCATGCAGCCTCCGCCCAACCCACAAAATCAGCAGCAAAATCAACAGCAATAGTGTTGGTATGTGTCTTTTATCTTTGAAATTCGGTAGTTTTACCTTCTAGTGTCCAATTCTTTGATTTATCTATCTCTACAAAACTTGCAATCATTGAAGTCAAGTATACCGATCTTCTTTGCTCGTAATTTACCAACGAGGATGCATCAGATTAAAATATAGGGGCACTGTATTTAGAATGGATTGCATTTGAATATGTTTCCAATTCCCCTGTAATCCCGAATCACCCATTACTGTATTATTGCTTAGAGTTAGGGACTGTCTCAGAAGACTGTCACTTTAACATGTTCAAATACCGCTGGCTTTTTGGTAGACACCCTTTTTGCAACAAGGATTTTGTTGTAACGTTTCTCTGGAGATAGTTTCGTTGGCAAGGATAAGTTCACTTCATTAATGTTCATTTTCTACTTTAGGGTTCTTTTGCTCGAGAGAAGCTGTAGGATCTTCTAAAGGAAGTCTAGTCTAGGGAACAGTGTTGAGCTGGAGAAGCTTTAGTGTCTCAATGGGTTTGTCGTTTAAATAATTGTTTCCCCATATCTTTTGGTTAATTTTCATTCCAATGTCAACATTGGTTCCTATTCTTAGAATGAGGTGTGTTATTGTGACTGTGTGAAGAATTGTCTTATTTTGGAAAGGCCAACCATGGAACAACAACTGACTTTGTAAACAATTACACTTGATCACTTATTGATCAAGTTAAAAAAAGCCTTTTCAGAATTGCCTCTCACCATACACTCATTACTCTTTCTAAACCTAGCGTTGTTTAGTTCATTCCTTCCCCTGTGGAGTCGCTCCCCCAGTTTTAGGTAGGACTAGTGTTTTCTAAGCGCAAGGCGGAATGCTAAGCGATACTCTACTTGATCGCCTCAAAGCGAGAGGCAATTAAAAGGCGAGACCCGAGTGAAGAGAGGTGCAACAAATAAATGCATAACTAGCATAAATCGATAAATAAAACATATTTCTATTCTCACTACATTTCAAATTCATACATAAATCACACAAATTATGTTATTATAAAATTATTATACATATTTATTATCTGTCTAAAAAAAATTTAAAGTTAACCAAAAGTATAAAAAAAACGAAAATTCTATATAGATATATATATATATTCATTTGAAATAACAATTAAACAGATTCAATATCCTTAATAAAAACCTCACATGGTTGTTAGATTTCTTCCTGAGCTAATTCTAGGTTATTTCGTAGATATTAAGTTAGCATATTGATAGATAAATAAAACTTTGACAAGACGCACGCCTTGGCCTAAGGCGAAGGCGATGCGAGACGCAAAATGGCAAGGAAAGGCAAGGGCTTGATTGAAGAGCTCACCTTGTCTTTTTTAGAGGTGCAATACCCACATATGTGCAAGGCAATGGCCATAGGCGAGGAAAGGTGATGACCTTGAAAACAATGGGTAGGAGGAAGGCCTTTACCCTGCCGACAACATAACTTTGCCAACCATCTATCTTTGGTGTTTCTGCCTCTTCAACACTTGCGTTGTTGTTTGACTCATCTCTGGCAATGCCTCATAAACCATTGAACTAAGGTGAAATCATCAATCTTCCTCCATCGAAGATCAAATCCTCTTAAATCACCAAACCTGGATTTATCAAGACTCTAGCACCTTCCGACTTTGCCAACCATCCATCATTGGTTCCACTCCTACTTGACTTTCACGCTGCCTCTTCTTGAGCCACCCATGCCATTACCATTCAAATTTACTCGCCATCCATCTCTAGTGCCTTCTCTTGAACCATTGAATCTTATGAGTGATCACAATTGCCATACCAAATTTTCCATGTTTTTCTCCATTGATCTTCCTCAAACATGTCTACTCCGTTGTTGTCACCAACTCACCATTTCTCCTCTTTAAGAACTTTGACATTACTTCCATTGCTTTAAATTTGAAAGCTTTTTTGTAATTTTGTATGCTTCTTGCATACTTTATATACCACTTTGTATCTTTTCCAAAAAAAAAAAACTCACCATTTCTCCTCTAATGTCCATCATACCCAATCGTTAGCGAGTTTTTTCATTACAAATTATATCCTTGAGAGATTGCTACATGTTGATTTTCTTCGCCATCTTGACTTACCCCTTGTTTCGACACAAAGTGAAGCCTATGTCAAGACTTGCCCAGATGTTTCATCTGCTATGAGCATTGCCAATCTTGATCTGTTTTTCTCTAACCTCAAGAGCGTTGTACTTTAACAGTGACAACGACGCGCACACCCAACTTCTATCATCTTCAAAAACTAGGTCTATGTGTTTTTTTCTTCATAAAAAATACACTTCATACAACCTTTTCTTTGGCATTATTCAATGCCGTCTTCACCACAACACTATTTTGATAAAAAAAACTATTTAACAGGGAACGATTTTTTGCTCCCAAGGGGCGGCCTCGTTGGGAGAGGCTTGGGGTCTCTAAGGTATCTCCTTGGAGGTCCCAAGTTTGAAACCAATGAGTGAGCTTAATTATAAAACCTTTTGTTGTCTATTTGGTCTAGACCCTGGGATGGGTGCCCTAGGTATGGAGTGGAGTGAACAAAAACATGGAACAATTTGGCTACTTGTCTTCCTTTCATCGGTCACCGTTGTATTTAATTGCCCTCTATATTTATTGTCCTATATATCAACTTGTGTTTAGCTGCCTCCTCCCCGTTTCTCTCTTATCCTTATTTATATTGCTTGTTTTGATAGGTCTTCTTAAATCTCAACACTTTCACAAATCAATGAAATTAGTTTTTGTTTCAGCTTAAAAGTAACAGATATTTTGTTATTCCCTTGTGTTTGTTAGTTTCTCTTATATTATCCTTTTCTTGGTAGGCTATCTAGGTGTTCAGTTCTCGAATTTGCACTTGAAAACCCAAACACAAGGCAGGTTCTTCTGCACTTCTATAGTTTCCTCATGGCTGGTTCTTTCTTCATTACTTTGTGCTTAGTAGAATACTATTGCTTTACTGGTTCCAAAATAAGCAATGATATTTTTAATAAAGGCCAAAGTAAGCCTGTAGGAACATTTATGATTTAACATTGTTAGGGGTTATTTTCTTCCAATCTCCCCGATAGATCCTTGAATAGGAACCGAATACTTTTTTTGTTGACATAAAAGAAAGATTTATTGAATGAAGTTCCCACGTTTGGATTAAATGGTTTGTCTAAATGTTCCTATAAATAATCATGACTTAATGTTTGCCAATTTGTAGTCCCGATGGGCGATGGGCAGCCTTGTTGGTAAAGGCTTGCAGTCTCCAAGATATGCTTTGATCCAACCTTTCTTACATCATGCTCCTTCAGAGGACTTAGGTTTAAAACATGCGAGTGAGTTTAATGGTAAAATTTCTTGTTGTCTCCAAGGTCTAGGCGCGAGTGCCTCGAGTATGTAGTGGGGACAATTATTAAGTCAAATGACTATCTTTAGGTCAAGGGTTCAATTT

mRNA sequence

ATGTCGATGTCTAAGAGTTCGAAGATGCTGCAGTACGTTAACTACCGGATGAGGGTTACGATCCAAGATGGTCGCCAATTGGTTGGCAAGTTCATGGCCTTCGATCGCCACATGAACCTCGTCCTCGGCGACTGCGAGGAGTTCCGCAAGCTTCCCCCGGCCAAGGGTAAGAAGACCAACGAGGAACGCGACGAGCGCCGCACCCTTGGCCTCGTTCTTCTCCGCGGCGAAGAGGTCATTTCCATGACTGTTGAGGGTCCTCCGCCTGCTGAAGACTCCCGTGCTAAGGCCGTCAATGCCGCTGCCATGGCTGGCCCTGGTATTGGCCGTGCCGCCGGGAGGGGTATCCCCACTGCCCCTCTTGTTCAAGCCCAGCCTGGTCTCTCTGGCCCTGTTCGTGGTGTCGGCAGTCCCGCTCCCGGGATGATGCAGCCTCAAATCTCTCGCCCGCCTATCCCTCAGATGTCTGCCCCCCCAATGTCATATCCGCCTGCTCCCATTATCCGTCCGCCTTCTCAGATCCCAATGTTCCCAGGCCAAGGTCCACCTCCAGTTGGGAGAGGAATGCCTCCTCCGGGGCCTCCACCACAATTCTCAGCGGCCAGACCCGGGGTGCCCCCACCACAGTTCCCGGGTCCTCCTCAATTTGCGCAGAGACCCATGGGACCTCCACCAACCGGGCAGATGATGAGAGGACCTCCACCTCCACCCAGGCCTGGCATGACAGGTCCTCCGCCTCGACCTGGGATGCCTCCTCCGCCCGGTGGCCAAGTTCCTGTTTACGGACCACCTCGTCCTGGCATGCAGCCTCCGCCCAACCCACAAAATCAGCAGCAAAATCAACAGCAATAGTGTTGGCTATCTAGGTGTTCAGTTCTCGAATTTGCACTTGAAAACCCAAACACAAGGCAGGTTCTTCTGCACTTCTATAGTTTCCTCATGGCTGGTTCTTTCTTCATTACTTTGTGCTTAGTAGAATACTATTGCTTTACTGGTTCCAAAATAAGCAATGATATTTTTAATAAAGGCCAAAGTAAGCCTGTAGGAACATTTATGATTTAACATTGTTAGGGGTTATTTTCTTCCAATCTCCCCGATAGATCCTTGAATAGGAACCGAATACTTTTTTTGTTGACATAAAAGAAAGATTTATTGAATGAAGTTCCCACGTTTGGATTAAATGGTTTGTCTAAATGTTCCTATAAATAATCATGACTTAATGTTTGCCAATTTGTAGTCCCGATGGGCGATGGGCAGCCTTGTTGGTAAAGGCTTGCAGTCTCCAAGATATGCTTTGATCCAACCTTTCTTACATCATGCTCCTTCAGAGGACTTAGGTTTAAAACATGCGAGTGAGTTTAATGGTAAAATTTCTTGTTGTCTCCAAGGTCTAGGCGCGAGTGCCTCGAGTATGTAGTGGGGACAATTATTAAGTCAAATGACTATCTTTAGGTCAAGGGTTCAATTT

Coding sequence (CDS)

ATGTCGATGTCTAAGAGTTCGAAGATGCTGCAGTACGTTAACTACCGGATGAGGGTTACGATCCAAGATGGTCGCCAATTGGTTGGCAAGTTCATGGCCTTCGATCGCCACATGAACCTCGTCCTCGGCGACTGCGAGGAGTTCCGCAAGCTTCCCCCGGCCAAGGGTAAGAAGACCAACGAGGAACGCGACGAGCGCCGCACCCTTGGCCTCGTTCTTCTCCGCGGCGAAGAGGTCATTTCCATGACTGTTGAGGGTCCTCCGCCTGCTGAAGACTCCCGTGCTAAGGCCGTCAATGCCGCTGCCATGGCTGGCCCTGGTATTGGCCGTGCCGCCGGGAGGGGTATCCCCACTGCCCCTCTTGTTCAAGCCCAGCCTGGTCTCTCTGGCCCTGTTCGTGGTGTCGGCAGTCCCGCTCCCGGGATGATGCAGCCTCAAATCTCTCGCCCGCCTATCCCTCAGATGTCTGCCCCCCCAATGTCATATCCGCCTGCTCCCATTATCCGTCCGCCTTCTCAGATCCCAATGTTCCCAGGCCAAGGTCCACCTCCAGTTGGGAGAGGAATGCCTCCTCCGGGGCCTCCACCACAATTCTCAGCGGCCAGACCCGGGGTGCCCCCACCACAGTTCCCGGGTCCTCCTCAATTTGCGCAGAGACCCATGGGACCTCCACCAACCGGGCAGATGATGAGAGGACCTCCACCTCCACCCAGGCCTGGCATGACAGGTCCTCCGCCTCGACCTGGGATGCCTCCTCCGCCCGGTGGCCAAGTTCCTGTTTACGGACCACCTCGTCCTGGCATGCAGCCTCCGCCCAACCCACAAAATCAGCAGCAAAATCAACAGCAATAG

Protein sequence

MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEDSRAKAVNAAAMAGPGIGRAAGRGIPTAPLVQAQPGLSGPVRGVGSPAPGMMQPQISRPPIPQMSAPPMSYPPAPIIRPPSQIPMFPGQGPPPVGRGMPPPGPPPQFSAARPGVPPPQFPGPPQFAQRPMGPPPTGQMMRGPPPPPRPGMTGPPPRPGMPPPPGGQVPVYGPPRPGMQPPPNPQNQQQNQQQ

Homology

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BLAST of Sed0027177 vs. NCBI nr
Match: XP_008439504.1 (PREDICTED: small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo])

HSP 1 Score: 486.9 bits (1252), Expect = 1.2e-133
Identity = 262/284 (92.25%), Postives = 272/284 (95.77%), Query Frame = 0


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQY+NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEDSRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAE+SRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLSGPVRGVGSPAPGMMQPQISRPPIPQMSAPPMSYPPAPIIRPPSQIPMFPGQ 180
           LVQAQPGL+GPVRGVG PAPGMMQPQISRPP+PQ+SAPPM+YP AP+IRPP Q+PMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180

Query: 181 GPPPVGRGMPPPGPPPQFSAARPGVPPPQ-FPGPPQFAQRPMGPPPTGQMMRGPPPPPRP 240
            PPP+GRGMPPP PPPQFSAARPG  PPQ FPGPPQFAQRPMGPPPTGQ+MRGPPPPPRP
Sbjct: 181 APPPIGRGMPPPVPPPQFSAARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRP 240

Query: 241 GMTGPPPRPGMPPPPGGQVPVYGPPRPGMQPPPNPQNQQQNQQQ 284
           GM  PPPRPGMPPPPGG VPVYGPPRPGM PPPNPQNQQQNQQQ
Sbjct: 241 GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 284

[Close]

BLAST of Sed0027177 vs. NCBI nr
Match: XP_004134546.1 (small nuclear ribonucleoprotein-associated protein B' [Cucumis sativus] >KGN49496.1 hypothetical protein Csa_003303 [Cucumis sativus])

HSP 1 Score: 485.7 bits (1249), Expect = 2.7e-133
Identity = 262/284 (92.25%), Postives = 271/284 (95.42%), Query Frame = 0


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQY+NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEDSRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAE+SRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLSGPVRGVGSPAPGMMQPQISRPPIPQMSAPPMSYPPAPIIRPPSQIPMFPGQ 180
           LVQAQPGL+GPVRGVG PAPGMMQPQISRPP+PQ+SAPPM+YP APIIRPP Q+PMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQ 180

Query: 181 GPPPVGRGMPPPGPPPQFSAARPGVPPPQ-FPGPPQFAQRPMGPPPTGQMMRGPPPPPRP 240
            PPP+GRGMPPP PPPQFS ARPG  PPQ FPGPPQFAQRPMGPPPTGQ+MRGPPPPPRP
Sbjct: 181 APPPIGRGMPPPVPPPQFSGARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRP 240

Query: 241 GMTGPPPRPGMPPPPGGQVPVYGPPRPGMQPPPNPQNQQQNQQQ 284
           GM  PPPRPGMPPPPGG VPVYGPPRPGM PPPNPQNQQQNQQQ
Sbjct: 241 GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 284

[Close]

BLAST of Sed0027177 vs. NCBI nr
Match: XP_038882444.1 (small nuclear ribonucleoprotein-associated protein B'-like [Benincasa hispida] >XP_038882445.1 small nuclear ribonucleoprotein-associated protein B'-like [Benincasa hispida])

HSP 1 Score: 483.8 bits (1244), Expect = 1.0e-132
Identity = 262/284 (92.25%), Postives = 271/284 (95.42%), Query Frame = 0


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQY+NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEDSRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAE+SRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLSGPVRGVGSPAPGMMQPQISRPPIPQMSAPPMSYPPAPIIRPPSQIPMFPGQ 180
           LVQAQPGL+GPVRGVG PAPGMMQPQISRPP+PQ+SAPPM+YP AP+IRPP Q+PMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180

Query: 181 GPPPVGRGMPPPGPPPQFSAARPGVPPPQ-FPGPPQFAQRPMGPPPTGQMMRGPPPPPRP 240
            PPPVGRGMPPP PPPQFSAARPG  PPQ FP PPQFAQRPMGPPPTGQ+MRGPPPPPRP
Sbjct: 181 APPPVGRGMPPPVPPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRP 240

Query: 241 GMTGPPPRPGMPPPPGGQVPVYGPPRPGMQPPPNPQNQQQNQQQ 284
           GM  PPPRPGMPPPPGG VPVYGPPRPGM PPPNPQNQQQNQQQ
Sbjct: 241 GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 284

[Close]

BLAST of Sed0027177 vs. NCBI nr
Match: KAA0052454.1 (small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo var. makuwa] >TYK13368.1 small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo var. makuwa])

HSP 1 Score: 483.8 bits (1244), Expect = 1.0e-132
Identity = 260/282 (92.20%), Postives = 270/282 (95.74%), Query Frame = 0


Query: 3   MSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEE 62
           MSKSSKMLQY+NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEE
Sbjct: 1   MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEE 60

Query: 63  RDERRTLGLVLLRGEEVISMTVEGPPPAEDSRAKAVNAAAMAGPGIGRAAGRGIPTAPLV 122
           RDERRTLGLVLLRGEEVISMTVEGPPPAE+SRAKAVNAAAMAGPGIGRAAGRGIPTAPLV
Sbjct: 61  RDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLV 120

Query: 123 QAQPGLSGPVRGVGSPAPGMMQPQISRPPIPQMSAPPMSYPPAPIIRPPSQIPMFPGQGP 182
           QAQPGL+GPVRGVG PAPGMMQPQISRPP+PQ+SAPPM+YP AP+IRPP Q+PMFPGQ P
Sbjct: 121 QAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAP 180

Query: 183 PPVGRGMPPPGPPPQFSAARPGVPPPQ-FPGPPQFAQRPMGPPPTGQMMRGPPPPPRPGM 242
           PP+GRGMPPP PPPQFSAARPG  PPQ FPGPPQFAQRPMGPPPTGQ+MRGPPPPPRPGM
Sbjct: 181 PPIGRGMPPPVPPPQFSAARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGM 240

Query: 243 TGPPPRPGMPPPPGGQVPVYGPPRPGMQPPPNPQNQQQNQQQ 284
             PPPRPGMPPPPGG VPVYGPPRPGM PPPNPQNQQQNQQQ
Sbjct: 241 PAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 282

[Close]

BLAST of Sed0027177 vs. NCBI nr
Match: XP_022925730.1 (small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita moschata] >XP_023544574.1 small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita pepo subsp. pepo] >KAG6581498.1 Small nuclear ribonucleoprotein-associated protein B', partial [Cucurbita argyrosperma subsp. sororia] >KAG7034787.1 Small nuclear ribonucleoprotein-associated protein B', partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 483.8 bits (1244), Expect = 1.0e-132
Identity = 261/284 (91.90%), Postives = 271/284 (95.42%), Query Frame = 0


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQY+NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEDSRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAE+SRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLSGPVRGVGSPAPGMMQPQISRPPIPQMSAPPMSYPPAPIIRPPSQIPMFPGQ 180
           LVQAQPGL+GPVRGVG PAPGMMQPQISRPP+PQ+SAPPM+YP AP+IRPP Q+PMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180

Query: 181 GPPPVGRGMPPPGPPPQFSAARPGVPPPQ-FPGPPQFAQRPMGPPPTGQMMRGPPPPPRP 240
            PPPVGRGMPPPGPPPQFSAARPG  PPQ FP PPQFAQRPMGPPPTGQ+MRGPPPPPRP
Sbjct: 181 APPPVGRGMPPPGPPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRP 240

Query: 241 GMTGPPPRPGMPPPPGGQVPVYGPPRPGMQPPPNPQNQQQNQQQ 284
           GM  PPPRPGMPPPPGG VP+YGPPRPGM PPP PQNQQQNQQQ
Sbjct: 241 GMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ 284

[Close]

BLAST of Sed0027177 vs. ExPASy Swiss-Prot
Match: Q9N1Q0 (Small nuclear ribonucleoprotein-associated protein B' OS=Macropus eugenii OX=9315 GN=SNRPB PE=2 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 4.4e-46
Identity = 133/256 (51.95%), Postives = 161/256 (62.89%), Query Frame = 0


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           M++ KSSKMLQ+++YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQA- 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEDSRAKAVNAAAMAGPGIGRAAGRGIPT-A 120
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   + A  GPGIGRAAGRG+P   
Sbjct: 61  -EREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLSGAAGGPGIGRAAGRGVPAGV 120

Query: 121 PLVQAQPGLSGPVRGVGSPAPGMMQPQISRPPIPQMSAPPMSYPPAPIIRPPSQIPMFPG 180
           P+ QA  GL+GPVRGVG P+  +M PQ         +A   S   AP   PP +     G
Sbjct: 121 PMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQHPPGR-----G 180

Query: 181 QGPPPVGRGMPPPGPPPQFSAARPGVPPPQFP--GPPQFAQRPMGPPPTGQMMRGPPPPP 240
             PPP+GRG PPPG      A  PG+ PP  P  G P     PMG PP G  MR    PP
Sbjct: 181 GPPPPMGRGRPPPG----MMAPPPGMRPPMGPPTGMPPGRGAPMGIPPPG--MR----PP 238

Query: 241 RPGMTGPPPRPGMPPP 254
            PGM GPPP PGM PP
Sbjct: 241 PPGMRGPPP-PGMRPP 238

[Close]

BLAST of Sed0027177 vs. ExPASy Swiss-Prot
Match: P14678 (Small nuclear ribonucleoprotein-associated proteins B and B' OS=Homo sapiens OX=9606 GN=SNRPB PE=1 SV=2)

HSP 1 Score: 182.6 bits (462), Expect = 6.3e-45
Identity = 137/257 (53.31%), Postives = 164/257 (63.81%), Query Frame = 0


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           M++ KSSKMLQ+++YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQA- 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEDSRAKAVNAAAMAGPGIGRAAGRGIPT-A 120
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A A  GPGIGRAAGRGIP   
Sbjct: 61  -EREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGV 120

Query: 121 PLVQAQPGLSGPVRGVGSPAPGMMQPQISRPPIPQMSAPPMSYPPAPIIRPPSQIPMFPG 180
           P+ QA  GL+GPVRGVG P+  +M PQ  R  +   +A       A I   P+Q P   G
Sbjct: 121 PMPQAPAGLAGPVRGVGGPSQQVMTPQ-GRGTVAAAAAA----ATASIAGAPTQYPPGRG 180

Query: 181 QGPPPVGRGMPPP---GPPPQFSAARPGVPPPQFPGPPQFAQRPMGPPPTGQMMRGPPPP 240
             PPP+GRG PPP   GPPP     RP + PP   G P     PMG PP G  MR    P
Sbjct: 181 GPPPPMGRGAPPPGMMGPPP---GMRPPMGPPM--GIPPGRGTPMGMPPPG--MR----P 238

Query: 241 PRPGMTGPPPRPGMPPP 254
           P PGM GPPP PGM PP
Sbjct: 241 PPPGMRGPPP-PGMRPP 238

[Close]

BLAST of Sed0027177 vs. ExPASy Swiss-Prot
Match: Q9TU67 (Small nuclear ribonucleoprotein-associated protein B' OS=Erinaceus europaeus OX=9365 GN=SNRPB PE=2 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.4e-44
Identity = 136/257 (52.92%), Postives = 164/257 (63.81%), Query Frame = 0


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           M++ KSSKMLQ+++YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQA- 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEDSRAKAVNAAAMAGPGIGRAAGRGIPT-A 120
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A A  GPGIGRAAGRGIP   
Sbjct: 61  -EREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGV 120

Query: 121 PLVQAQPGLSGPVRGVGSPAPGMMQPQISRPPIPQMSAPPMSYPPAPIIRPPSQIPMFPG 180
           P+ QA  GL+GPVRGVG P+  +M PQ  R  +   +A       A I   P+Q P   G
Sbjct: 121 PMPQAPAGLAGPVRGVGGPSQQVMTPQ-GRGTVAAAAAA----ATASIAGAPTQYPPGRG 180

Query: 181 QGPPPVGRGMPPP---GPPPQFSAARPGVPPPQFPGPPQFAQRPMGPPPTGQMMRGPPPP 240
             PPP+GRG PPP   GPPP     RP + PP   G P     PMG PP G  MR    P
Sbjct: 181 GPPPPMGRGAPPPGMMGPPP---GMRPPMGPPM--GIPPGRGTPMGMPPPG--MR----P 238

Query: 241 PRPGMTGPPPRPGMPPP 254
           P PGM GPPP PG+ PP
Sbjct: 241 PPPGMRGPPP-PGLRPP 238

[Close]

BLAST of Sed0027177 vs. ExPASy Swiss-Prot
Match: Q9TU66 (Small nuclear ribonucleoprotein-associated protein B' OS=Monodelphis domestica OX=13616 GN=SNRPB PE=2 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.8e-44
Identity = 133/258 (51.55%), Postives = 162/258 (62.79%), Query Frame = 0


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           M++ KSSKMLQ+++ RMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDCRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQA- 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEDSRAKAVNAAAMAGPGIGRAAGRGIPT-A 120
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A A  GPGIGRAAGRG+P   
Sbjct: 61  -EREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGVPAGV 120

Query: 121 PLVQAQPGLSGPVRGVGSPAPGMMQPQISRPPIPQMSAPPMSYPPAPIIRPPSQIPMFPG 180
           P+ QA  GL+GP+RGVG P+  +M PQ  R  +   +A       A I   P+Q P   G
Sbjct: 121 PMPQAPAGLAGPIRGVGGPSQQVMTPQ-GRGTVAAAAAA----ATASIAGAPTQYPSGRG 180

Query: 181 QGPPPVGRGMPPPGPPPQFSAARPGVPPPQFPGPPQFAQRPMG-PPPTGQMMRGPPP--- 240
             PPP+GRG PPPG      A  PG+ PP  P        PMG PP  G  M  PPP   
Sbjct: 181 GPPPPMGRGAPPPG----MMAPPPGMRPPMGP--------PMGMPPGRGAPMGMPPPGMR 238

Query: 241 PPRPGMTGPPPRPGMPPP 254
           PP PGM GPPP PGM PP
Sbjct: 241 PPPPGMRGPPP-PGMRPP 238

[Close]

BLAST of Sed0027177 vs. ExPASy Swiss-Prot
Match: Q58DW4 (Small nuclear ribonucleoprotein-associated protein B' OS=Bos taurus OX=9913 GN=SNRPB PE=2 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 3.1e-44
Identity = 136/257 (52.92%), Postives = 163/257 (63.42%), Query Frame = 0


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           M++ KSSKMLQ+++YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQA- 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEDSRAKAVNAAAMAGPGIGRAAGRGIPT-A 120
            ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A A  GPGIGRAAGRGIP   
Sbjct: 61  -EREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGV 120

Query: 121 PLVQAQPGLSGPVRGVGSPAPGMMQPQISRPPIPQMSAPPMSYPPAPIIRPPSQIPMFPG 180
           P+ QA  GL+GPVRGVG P+  +M PQ  R  +   +A       A I   P+Q P    
Sbjct: 121 PMPQAPAGLAGPVRGVGGPSQQVMTPQ-GRGTVAAAAAA----ATASIAGAPTQYPPGRA 180

Query: 181 QGPPPVGRGMPPP---GPPPQFSAARPGVPPPQFPGPPQFAQRPMGPPPTGQMMRGPPPP 240
             PPP+GRG PPP   GPPP     RP + PP   G P     PMG PP G  MR    P
Sbjct: 181 GPPPPMGRGAPPPGMMGPPP---GMRPPMGPPM--GIPPGRGTPMGMPPPG--MR----P 238

Query: 241 PRPGMTGPPPRPGMPPP 254
           P PGM GPPP PGM PP
Sbjct: 241 PPPGMRGPPP-PGMRPP 238

[Close]

BLAST of Sed0027177 vs. ExPASy TrEMBL
Match: A0A1S3AZK2 (Small nuclear ribonucleoprotein-associated protein OS=Cucumis melo OX=3656 GN=LOC103484284 PE=3 SV=1)

HSP 1 Score: 486.9 bits (1252), Expect = 5.8e-134
Identity = 262/284 (92.25%), Postives = 272/284 (95.77%), Query Frame = 0


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQY+NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEDSRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAE+SRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLSGPVRGVGSPAPGMMQPQISRPPIPQMSAPPMSYPPAPIIRPPSQIPMFPGQ 180
           LVQAQPGL+GPVRGVG PAPGMMQPQISRPP+PQ+SAPPM+YP AP+IRPP Q+PMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180

Query: 181 GPPPVGRGMPPPGPPPQFSAARPGVPPPQ-FPGPPQFAQRPMGPPPTGQMMRGPPPPPRP 240
            PPP+GRGMPPP PPPQFSAARPG  PPQ FPGPPQFAQRPMGPPPTGQ+MRGPPPPPRP
Sbjct: 181 APPPIGRGMPPPVPPPQFSAARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRP 240

Query: 241 GMTGPPPRPGMPPPPGGQVPVYGPPRPGMQPPPNPQNQQQNQQQ 284
           GM  PPPRPGMPPPPGG VPVYGPPRPGM PPPNPQNQQQNQQQ
Sbjct: 241 GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 284

[Close]

BLAST of Sed0027177 vs. ExPASy TrEMBL
Match: A0A0A0KPA9 (Small nuclear ribonucleoprotein-associated protein OS=Cucumis sativus OX=3659 GN=Csa_6G526300 PE=3 SV=1)

HSP 1 Score: 485.7 bits (1249), Expect = 1.3e-133
Identity = 262/284 (92.25%), Postives = 271/284 (95.42%), Query Frame = 0


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQY+NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEDSRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAE+SRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLSGPVRGVGSPAPGMMQPQISRPPIPQMSAPPMSYPPAPIIRPPSQIPMFPGQ 180
           LVQAQPGL+GPVRGVG PAPGMMQPQISRPP+PQ+SAPPM+YP APIIRPP Q+PMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPIIRPPGQMPMFPGQ 180

Query: 181 GPPPVGRGMPPPGPPPQFSAARPGVPPPQ-FPGPPQFAQRPMGPPPTGQMMRGPPPPPRP 240
            PPP+GRGMPPP PPPQFS ARPG  PPQ FPGPPQFAQRPMGPPPTGQ+MRGPPPPPRP
Sbjct: 181 APPPIGRGMPPPVPPPQFSGARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRP 240

Query: 241 GMTGPPPRPGMPPPPGGQVPVYGPPRPGMQPPPNPQNQQQNQQQ 284
           GM  PPPRPGMPPPPGG VPVYGPPRPGM PPPNPQNQQQNQQQ
Sbjct: 241 GMPAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 284

[Close]

BLAST of Sed0027177 vs. ExPASy TrEMBL
Match: A0A5A7UAP6 (Small nuclear ribonucleoprotein-associated protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009950 PE=3 SV=1)

HSP 1 Score: 483.8 bits (1244), Expect = 4.9e-133
Identity = 260/282 (92.20%), Postives = 270/282 (95.74%), Query Frame = 0


Query: 3   MSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEE 62
           MSKSSKMLQY+NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEE
Sbjct: 1   MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEE 60

Query: 63  RDERRTLGLVLLRGEEVISMTVEGPPPAEDSRAKAVNAAAMAGPGIGRAAGRGIPTAPLV 122
           RDERRTLGLVLLRGEEVISMTVEGPPPAE+SRAKAVNAAAMAGPGIGRAAGRGIPTAPLV
Sbjct: 61  RDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAPLV 120

Query: 123 QAQPGLSGPVRGVGSPAPGMMQPQISRPPIPQMSAPPMSYPPAPIIRPPSQIPMFPGQGP 182
           QAQPGL+GPVRGVG PAPGMMQPQISRPP+PQ+SAPPM+YP AP+IRPP Q+PMFPGQ P
Sbjct: 121 QAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQAP 180

Query: 183 PPVGRGMPPPGPPPQFSAARPGVPPPQ-FPGPPQFAQRPMGPPPTGQMMRGPPPPPRPGM 242
           PP+GRGMPPP PPPQFSAARPG  PPQ FPGPPQFAQRPMGPPPTGQ+MRGPPPPPRPGM
Sbjct: 181 PPIGRGMPPPVPPPQFSAARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGM 240

Query: 243 TGPPPRPGMPPPPGGQVPVYGPPRPGMQPPPNPQNQQQNQQQ 284
             PPPRPGMPPPPGG VPVYGPPRPGM PPPNPQNQQQNQQQ
Sbjct: 241 PAPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 282

[Close]

BLAST of Sed0027177 vs. ExPASy TrEMBL
Match: A0A6J1EJ14 (Small nuclear ribonucleoprotein-associated protein OS=Cucurbita moschata OX=3662 GN=LOC111433057 PE=3 SV=1)

HSP 1 Score: 483.8 bits (1244), Expect = 4.9e-133
Identity = 261/284 (91.90%), Postives = 271/284 (95.42%), Query Frame = 0


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQY+NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEDSRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAE+SRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLSGPVRGVGSPAPGMMQPQISRPPIPQMSAPPMSYPPAPIIRPPSQIPMFPGQ 180
           LVQAQPGL+GPVRGVG PAPGMMQPQISRPP+PQ+SAPPM+YP AP+IRPP Q+PMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAAPVIRPPGQMPMFPGQ 180

Query: 181 GPPPVGRGMPPPGPPPQFSAARPGVPPPQ-FPGPPQFAQRPMGPPPTGQMMRGPPPPPRP 240
            PPPVGRGMPPPGPPPQFSAARPG  PPQ FP PPQFAQRPMGPPPTGQ+MRGPPPPPRP
Sbjct: 181 APPPVGRGMPPPGPPPQFSAARPGGAPPQPFPVPPQFAQRPMGPPPTGQVMRGPPPPPRP 240

Query: 241 GMTGPPPRPGMPPPPGGQVPVYGPPRPGMQPPPNPQNQQQNQQQ 284
           GM  PPPRPGMPPPPGG VP+YGPPRPGM PPP PQNQQQNQQQ
Sbjct: 241 GMPAPPPRPGMPPPPGGAVPIYGPPRPGMPPPPAPQNQQQNQQQ 284

[Close]

BLAST of Sed0027177 vs. ExPASy TrEMBL
Match: A0A6J1EFE7 (Small nuclear ribonucleoprotein-associated protein OS=Cucurbita moschata OX=3662 GN=LOC111433699 PE=3 SV=1)

HSP 1 Score: 481.9 bits (1239), Expect = 1.9e-132
Identity = 263/284 (92.61%), Postives = 270/284 (95.07%), Query Frame = 0


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN
Sbjct: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEDSRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EERDERRTLGLVLLRGEEVISMTVEGPPPAE+SRAKAVNAAAMAGPGIGRAAGRGIPTAP
Sbjct: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPTAP 120

Query: 121 LVQAQPGLSGPVRGVGSPAPGMMQPQISRPPIPQMSAPPMSYPPAPIIRPPSQIPMFPGQ 180
           LVQAQPGL+GPVRGVG PAPGMMQPQISRPP+PQ+SAPPMSYP AP+IRPP Q+PMFPGQ
Sbjct: 121 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQ 180

Query: 181 GPPPVGRGMPPPGPPPQFSAARPGVPPPQ-FPGPPQFAQRPMGPPPTGQMMRGPPPPPRP 240
           GPPPVGRGM    PPPQFSAARPG  PPQ FPGPPQFAQRPMGPPPTGQ+MRGPPPPPRP
Sbjct: 181 GPPPVGRGM----PPPQFSAARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRP 240

Query: 241 GMTGPPPRPGMPPPPGGQVPVYGPPRPGMQPPPNPQNQQQNQQQ 284
           GM  PPPRPGMPPPPGG VPVYGPPRPGM PPPNPQNQQQNQQQ
Sbjct: 241 GMAPPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ 280

[Close]

BLAST of Sed0027177 vs. TAIR 10
Match: AT4G20440.1 (small nuclear ribonucleoprotein associated protein B )

HSP 1 Score: 335.1 bits (858), Expect = 5.4e-92
Identity = 212/282 (75.18%), Postives = 227/282 (80.50%), Query Frame = 0


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQ++NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK N
Sbjct: 1   MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEDSRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EER++RRTLGLVLLRGEEVISMTVEGPPP E+SRAKA +AAA+AGPGIGRAAGRG+PT P
Sbjct: 61  EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAGSAAAVAGPGIGRAAGRGVPTGP 120

Query: 121 LVQAQPGLSGPVRGVGSPAPGMMQPQISRPPIPQMSAPPMSYPPAPIIRPPSQIPMFPGQ 180
           LVQAQPGLSGPVRGVG PAPGMMQPQISRP  PQ+SAPP+  PP  ++ PP     F GQ
Sbjct: 121 LVQAQPGLSGPVRGVGGPAPGMMQPQISRP--PQLSAPPIIRPPGQMLPPPP----FGGQ 180

Query: 181 GPPPVGRGMPPPGPPPQFSAARPGVPPPQF--PGPPQFAQRPMGPPPTGQMMRGPPPPPR 240
           G PP+GRG PPP         RP  PP QF  P PPQ+ QRPM PPP G MMRGPPPPP 
Sbjct: 181 G-PPMGRGPPPP------YGMRP--PPQQFSGPPPPQYGQRPMIPPP-GGMMRGPPPPPH 240

Query: 241 PGMTG-PPPRPGMPPPPGGQVPVYGPPRPGMQPPPNPQNQQQ 280
            GM G PPPRPGMPP PGG    + PPRPGM     P NQQQ
Sbjct: 241 -GMQGPPPPRPGMPPAPGG----FAPPRPGMP----PHNQQQ 257

[Close]

BLAST of Sed0027177 vs. TAIR 10
Match: AT4G20440.2 (small nuclear ribonucleoprotein associated protein B )

HSP 1 Score: 335.1 bits (858), Expect = 5.4e-92
Identity = 212/282 (75.18%), Postives = 227/282 (80.50%), Query Frame = 0


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQ++NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK N
Sbjct: 1   MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEDSRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EER++RRTLGLVLLRGEEVISMTVEGPPP E+SRAKA +AAA+AGPGIGRAAGRG+PT P
Sbjct: 61  EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAGSAAAVAGPGIGRAAGRGVPTGP 120

Query: 121 LVQAQPGLSGPVRGVGSPAPGMMQPQISRPPIPQMSAPPMSYPPAPIIRPPSQIPMFPGQ 180
           LVQAQPGLSGPVRGVG PAPGMMQPQISRP  PQ+SAPP+  PP  ++ PP     F GQ
Sbjct: 121 LVQAQPGLSGPVRGVGGPAPGMMQPQISRP--PQLSAPPIIRPPGQMLPPPP----FGGQ 180

Query: 181 GPPPVGRGMPPPGPPPQFSAARPGVPPPQF--PGPPQFAQRPMGPPPTGQMMRGPPPPPR 240
           G PP+GRG PPP         RP  PP QF  P PPQ+ QRPM PPP G MMRGPPPPP 
Sbjct: 181 G-PPMGRGPPPP------YGMRP--PPQQFSGPPPPQYGQRPMIPPP-GGMMRGPPPPPH 240

Query: 241 PGMTG-PPPRPGMPPPPGGQVPVYGPPRPGMQPPPNPQNQQQ 280
            GM G PPPRPGMPP PGG    + PPRPGM     P NQQQ
Sbjct: 241 -GMQGPPPPRPGMPPAPGG----FAPPRPGMP----PHNQQQ 257

[Close]

BLAST of Sed0027177 vs. TAIR 10
Match: AT4G20440.3 (small nuclear ribonucleoprotein associated protein B )

HSP 1 Score: 335.1 bits (858), Expect = 5.4e-92
Identity = 212/282 (75.18%), Postives = 227/282 (80.50%), Query Frame = 0


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQ++NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK N
Sbjct: 1   MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEDSRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EER++RRTLGLVLLRGEEVISMTVEGPPP E+SRAKA +AAA+AGPGIGRAAGRG+PT P
Sbjct: 61  EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAGSAAAVAGPGIGRAAGRGVPTGP 120

Query: 121 LVQAQPGLSGPVRGVGSPAPGMMQPQISRPPIPQMSAPPMSYPPAPIIRPPSQIPMFPGQ 180
           LVQAQPGLSGPVRGVG PAPGMMQPQISRP  PQ+SAPP+  PP  ++ PP     F GQ
Sbjct: 121 LVQAQPGLSGPVRGVGGPAPGMMQPQISRP--PQLSAPPIIRPPGQMLPPPP----FGGQ 180

Query: 181 GPPPVGRGMPPPGPPPQFSAARPGVPPPQF--PGPPQFAQRPMGPPPTGQMMRGPPPPPR 240
           G PP+GRG PPP         RP  PP QF  P PPQ+ QRPM PPP G MMRGPPPPP 
Sbjct: 181 G-PPMGRGPPPP------YGMRP--PPQQFSGPPPPQYGQRPMIPPP-GGMMRGPPPPPH 240

Query: 241 PGMTG-PPPRPGMPPPPGGQVPVYGPPRPGMQPPPNPQNQQQ 280
            GM G PPPRPGMPP PGG    + PPRPGM     P NQQQ
Sbjct: 241 -GMQGPPPPRPGMPPAPGG----FAPPRPGMP----PHNQQQ 257

[Close]

BLAST of Sed0027177 vs. TAIR 10
Match: AT4G20440.4 (small nuclear ribonucleoprotein associated protein B )

HSP 1 Score: 335.1 bits (858), Expect = 5.4e-92
Identity = 212/282 (75.18%), Postives = 227/282 (80.50%), Query Frame = 0


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTN 60
           MSMSKSSKMLQ++NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK N
Sbjct: 1   MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60

Query: 61  EERDERRTLGLVLLRGEEVISMTVEGPPPAEDSRAKAVNAAAMAGPGIGRAAGRGIPTAP 120
           EER++RRTLGLVLLRGEEVISMTVEGPPP E+SRAKA +AAA+AGPGIGRAAGRG+PT P
Sbjct: 61  EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAGSAAAVAGPGIGRAAGRGVPTGP 120

Query: 121 LVQAQPGLSGPVRGVGSPAPGMMQPQISRPPIPQMSAPPMSYPPAPIIRPPSQIPMFPGQ 180
           LVQAQPGLSGPVRGVG PAPGMMQPQISRP  PQ+SAPP+  PP  ++ PP     F GQ
Sbjct: 121 LVQAQPGLSGPVRGVGGPAPGMMQPQISRP--PQLSAPPIIRPPGQMLPPPP----FGGQ 180

Query: 181 GPPPVGRGMPPPGPPPQFSAARPGVPPPQF--PGPPQFAQRPMGPPPTGQMMRGPPPPPR 240
           G PP+GRG PPP         RP  PP QF  P PPQ+ QRPM PPP G MMRGPPPPP 
Sbjct: 181 G-PPMGRGPPPP------YGMRP--PPQQFSGPPPPQYGQRPMIPPP-GGMMRGPPPPPH 240

Query: 241 PGMTG-PPPRPGMPPPPGGQVPVYGPPRPGMQPPPNPQNQQQ 280
            GM G PPPRPGMPP PGG    + PPRPGM     P NQQQ
Sbjct: 241 -GMQGPPPPRPGMPPAPGG----FAPPRPGMP----PHNQQQ 257

[Close]

BLAST of Sed0027177 vs. TAIR 10
Match: AT5G44500.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 315.8 bits (808), Expect = 3.4e-86
Identity = 201/284 (70.77%), Postives = 215/284 (75.70%), Query Frame = 0


Query: 1   MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKG-KKT 60
           MSMSKSSKMLQ++NYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDCEEFRKLPPAKG KKT
Sbjct: 1   MSMSKSSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKT 60

Query: 61  NEERDERRTLGLVLLRGEEVISMTVEGPPPAEDSRAKAVNAAAMAGPGIGRAAGRGIPTA 120
           NEER+ERRTLGLVLLRGEEVISMTVEGPPP E+SRAK+ +  A+AGPGIGRAAGRG+PT 
Sbjct: 61  NEEREERRTLGLVLLRGEEVISMTVEGPPPPEESRAKSGSVTAVAGPGIGRAAGRGVPTG 120

Query: 121 PLVQAQPGLSGPVRGVGSPAPGMMQPQISRPPIPQMSAPPMSYPPAPIIRPPSQI---PM 180
           PLVQAQPGLSGPVRG+G PAPGMMQPQISRPP               IIRPP Q+   P 
Sbjct: 121 PLVQAQPGLSGPVRGIGGPAPGMMQPQISRPP--------------QIIRPPGQMPPQPP 180

Query: 181 FPGQGPPPVGRGMPPPGPPPQFSAARPGVPPPQFPGPPQFAQRPMGPPPTGQMMRGPPPP 240
           F GQG PP   GM PP          PG PPPQ+ G     QRPM  PP G MMRGPPPP
Sbjct: 181 FAGQGGPPPPYGMRPP---------YPGPPPPQYGG----QQRPMMIPPPGGMMRGPPPP 240

Query: 241 PRPGMTGPPP-RPGMPPPPGGQVPVYGPPRPGMQP-PPNPQNQQ 279
              GM GPPP RPGMPPP  G  P++ PP PGM P PPN  NQQ
Sbjct: 241 --HGMQGPPPSRPGMPPP--GGAPMFAPPHPGMPPAPPNHHNQQ 253

The following BLAST results are available for this feature:

BLAST of Sed0027177 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008439504.1	1.2e-133	92.25	PREDICTED: small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis...	[more]
XP_004134546.1	2.7e-133	92.25	small nuclear ribonucleoprotein-associated protein B' [Cucumis sativus] >KGN4949...	[more]
XP_038882444.1	1.0e-132	92.25	small nuclear ribonucleoprotein-associated protein B'-like [Benincasa hispida] >...	[more]
KAA0052454.1	1.0e-132	92.20	small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo var. ...	[more]
XP_022925730.1	1.0e-132	91.90	small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita moschata] ...	[more]

BLAST of Sed0027177 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9N1Q0	4.4e-46	51.95	Small nuclear ribonucleoprotein-associated protein B' OS=Macropus eugenii OX=931...	[more]
P14678	6.3e-45	53.31	Small nuclear ribonucleoprotein-associated proteins B and B' OS=Homo sapiens OX=...	[more]
Q9TU67	1.4e-44	52.92	Small nuclear ribonucleoprotein-associated protein B' OS=Erinaceus europaeus OX=...	[more]
Q9TU66	1.8e-44	51.55	Small nuclear ribonucleoprotein-associated protein B' OS=Monodelphis domestica O...	[more]
Q58DW4	3.1e-44	52.92	Small nuclear ribonucleoprotein-associated protein B' OS=Bos taurus OX=9913 GN=S...	[more]

BLAST of Sed0027177 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AZK2	5.8e-134	92.25	Small nuclear ribonucleoprotein-associated protein OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A0A0KPA9	1.3e-133	92.25	Small nuclear ribonucleoprotein-associated protein OS=Cucumis sativus OX=3659 GN...	[more]
A0A5A7UAP6	4.9e-133	92.20	Small nuclear ribonucleoprotein-associated protein OS=Cucumis melo var. makuwa O...	[more]
A0A6J1EJ14	4.9e-133	91.90	Small nuclear ribonucleoprotein-associated protein OS=Cucurbita moschata OX=3662...	[more]
A0A6J1EFE7	1.9e-132	92.61	Small nuclear ribonucleoprotein-associated protein OS=Cucurbita moschata OX=3662...	[more]

BLAST of Sed0027177 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G20440.1	5.4e-92	75.18	small nuclear ribonucleoprotein associated protein B	[more]
AT4G20440.2	5.4e-92	75.18	small nuclear ribonucleoprotein associated protein B	[more]
AT4G20440.3	5.4e-92	75.18	small nuclear ribonucleoprotein associated protein B	[more]
AT4G20440.4	5.4e-92	75.18	small nuclear ribonucleoprotein associated protein B	[more]
AT5G44500.1	3.4e-86	70.77	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 7..84 e-value: 7.0E-22 score: 88.7
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 9..83 e-value: 1.6E-18 score: 66.1
IPR017131	Small ribonucleoprotein associated, SmB/SmN	PIRSF	PIRSF037187	SmB_SmN	coord: 1..254 e-value: 1.7E-80 score: 268.0 coord: 236..274 e-value: 4000.0 score: -8.6
None	No IPR available	GENE3D	2.30.30.100		coord: 1..93 e-value: 1.3E-32 score: 113.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 162..283
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 162..273
None	No IPR available	PANTHER	PTHR10701	SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND N	coord: 1..277
None	No IPR available	PANTHER	PTHR10701:SF14	SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN	coord: 1..277
None	No IPR available	CDD	cd01717	Sm_B	coord: 5..85 e-value: 5.9855E-53 score: 165.417
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 7..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0027177.1	Sed0027177.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005685	U1 snRNP
cellular_component	GO:0005686	U2 snRNP
cellular_component	GO:0071004	U2-type prespliceosome
cellular_component	GO:0005687	U4 snRNP
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:0005682	U5 snRNP
molecular_function	GO:0003723	RNA binding