Sed0027170 (gene) Chayote v1

Overview
NameSed0027170
Typegene
OrganismSechium edule (Chayote v1)
DescriptionMediator of RNA polymerase II transcription subunit 11
LocationLG11: 27574245 .. 27579338 (-)
RNA-Seq ExpressionSed0027170
SyntenySed0027170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAATTTGACACAACAAGAGAGCAACGACAACCCAAAGGAGTCAAATAAAAAAAATGAAGAGACATTTTTTTATTATTAAATGACAGTATTGTCCTTCCCTTGTATACTCAATTTAATCTAGAAGGGAGGCAATTTGTGAAATTAAAATAAAATTAAAAAAAAAAAAGTTTTTGCAATTTTACTTAAAATATATTAGATTTTTTGACGCAGGCACATAAGTGGACTCCACCGGCGCTGCCGCTCACCAGTTCCTTCAACTCTTGTTCGTCGGCCGGTGAGTTCCCTTCTTTCTTTTTTTTCCCCTTATGTTTTCAAATCAAGGGTGCATTTGTAATTCGATCACCTTTGAATTTGAATTCTAAACTCAGACTCATCTTTTTGAAATCCTGCACTATTCTCAATGTCTTAGGTTTTGATGCGCCGTGCTTTAGCTTTATTTAGTTTTTCTTGTAATTTTAAGATTTGTTTTTTCAGAGATCAATTCGTATCAAATCCTCCATTGCTGTGAGATCTATCACAGCCTGCACTGCTCTTCATGGATCCGGTGACCCAGAATACTTCGTTGCAACGCCTTCAGAATGTGGAAAAGGTTGGAATAACTTTCTATACCCTAGATTTTTTTGTTTTTAATTCTTTTCATGTTTATTATTATTATTTACTAGTATTGGAATTTGGTTTTATTGATCATGAAATTAACTATACAAACAAAGGATTACAAAGACGTGTCCAATTTACTGTTGTAAATATGCAACATATCATAATCACATACACAAAAAAAAGTCTTAGCTAAGGTGCAACCATTTGATGATAGTACTCTCGTTTGATGATACTTCGTTGTATCGTGCCATGCCAAAGTATCATAAAGATAGCAACCGCTGAATTGATTCAAATTTCTCTTGCTCGTCCCTTAAAAGGGTAATCGATAATATGATATTTCATGAGAGAAAAGTAGGCCACCTATCTTATCAATACCGGTAGGTTTTTTCACTTTTTCAATATGACTCTCTTAACATGCCCCAAGATGGTGCCACTTTGGGCTAACTAATCTTGGATCGGATCCTAATTTCATTTTATTAGAACAACTACTCGTTTCAATTTAATGGTCTGCCTATTTTATCATATTAGATAGCAATTAGCATAGAGTTTCTCTCAAGACCAATTGGTGATGTTCAACAACAATTGGGGTTTGAGGGATTTGAACTCACGGCCTTTTGATTCATGAGCCATAGTAATGTCACTGAACTATTGCTTTTGTTGGCAATTGGTGATGATAGTTGTAGTAGCCCATCTATCTTATAGATGCTGGAACAATGTGGGATGTCTTGATCCAAAGCATCCCCCACACTTCTTGGGCCGTCACCAATTCACTACGAAGAAAGGAAAAGACTTGGACCATACTGAAATGGCATAGAGGCATTGAAGGAAGAGATGAACACGTAGTTAACTGTGACATCCTTCTTTGCAGTAATTGAACTTTCTTGACTAGGAATCAAAGGATGACTTTTTAGGAAAGTTGTATTTGAGAAAGTAGCTTCTAGGGAATGATTCTGACTCTGAGCACTGATTTTGGGCACCAAAGATCTCACCTTGAACATACCTCTGTTATGAAGAGCCCAAGCTTCAGCATCATCTTGATTAGTGGCTTCTTAGAGCTTATAATATCTGCTATTATATAACTCAATTCCTTGATTTCTTGGTCTGCTAGATTTCTATTGAAGAGAAGGTTCCACCCCTGATTATCTAAAGACCAGCATTGGTGAGTTTAGTAGCCCTTGGTCTTCGCAGAGTTGTACAGCCTTGGAAATCTAGTGCGGAATGGACCATCCCCAGTCCAAGAGTCCTCCCATTACCCCCATTGCTTGTCACAAATTTGTTCCATTTCTGCTTCCACCTCCTTTCTTCTTTCAAAATAACCTCTGCAAGTTTAGTTTTAGATGCTGTCTCTCATCAATTTCCTCCGGTATACAAACCTTCAGACTGCTCTAGTTCTTCAAGCGACTTGATTGAGTCGGTCAATTCTTTTTTCTGGTTGCTGAATGGAAAAGGTTTCCATTCCAATGCTTGAGCTTATTCTTCTTCATCTTGAGTTTCTGAATCATCCCAAGCTAACTAGAGGTGATCTCAATTGACATGATATAACCCGATAAAGAGGTTACAAAGTTCGAATCTCTCACTTCCATATGTTGTTGAATTATAAAAAGAGTTTATGAATCATCCCAAGCCTGGCCGGCCATCCATCAACTTTGTGTTATTCCACCAGATATCCAAAGTTCTAAATTAACGATAGGTGATGCACTAAAAAGATTCCAAATTTGAACAGCATTAAACCTCGCTTAAAAAAAGCATGTTTCTAGAACAATGAGGAAGTGGTCGGGGGGTATTTCTAGACAATCTCAAAACTCTGGAGTTTTGGAACTTGAGTTGGCACTCTGCATCTGTGATAATCCATCAATTAATCTAGAGAGTTGCCTATCTCTGCCACTCGTGCCCCTTTAAAAGGATGATCAATCAGCTCAAGCTCACCAATAAGTCTACAAAAATTTCCTTGCATGGTCTGCCATTGAAGCCTTAGATTTTTTCAGACTAACTTTTGTATTTTTCTTCCTGCAGCGAATTGTGAGGGTTCTGGAGTTAGCAGGAGGAGTCATGGAAGAGCTTGCCAACCCTGCTGGTCCAAAAAAGGAAATTGTGAACAATCATTGCAGTGAGTTCATGCAATTCATTAAGGTAAAAGCTCTCTGTGTTTGTTTGATAGTGTTGTCTCATGACTCATGTATTCGCTAGTAATGCTTCATTGTAGAATTAGATTATTCTGACCATTTGAGCACATTAACAGATATTTCATGGTAACACCACTGGAAATTATAATGAAAGTGGACTTTCCACCAACTTGTTTACAAAATCTTGAACTTTGATCAACTGTTATTTTAAAAGAATGATATTATGTTAAATTCAAAACTATTGGTAGTCTAGTATCGATAAAACTTTACCAGATAAAGGACTTTTCCTTGTATCTTGTTCCTACACATAAAGCATGCAGTGCTTGTGTTAGAGTATTACTGGGGTCTGGAATTATTGGGAATGCTATGTATAGTAGTGACATAAGACGAAGTAATTTATGGTAGCTCTAGCTTGTTAGGGTTAGTTGGTTGAGAGTTTGGGAGTGCACCAGGGGTATTGTTTCTGAATAATGATAATTTGTTACATTTGGTTCTCATAATTGGGATCCTAGGAGATTGTAACTATAAAATAATTTTTTTGTGATTGGTATGCCTAGTTTTAGTATTGTTTAAGATGGGTTGTCAGGATTTAGTTTTTAGTAAGTAATAATAAGTTGAGAGAAAAACTTGTCTATCTTTCCGGGAGATACTTCCTACATACTTTCTACCTATACAACTGCATTACTTATGTGGCATATTATTATCCACACAAACGGTAGGAAGTTCGTACGAGGGATAATAATGTACCACATTTATAATTTATCATTTCTCTCTCACAATCAACTCATTTTTTATAATAACTGCATTACTTATGTGGCATATTATTATCCACACAAATGGTAGGAAGTTCGTACGAGGTACCTTCCACTAAGTTGGCAAGTTTTTCTCATAAGTTGATAGCCTCTTGTATTTATTATTATTATTATTATGAGTAAAGTGTATGTTTGGATATATTTTTTAATATTTTATGACTCTTAATTTGTTAAAATAGTTATTTAATTAGCTATACGTCAAAATATTTTCAAAAATCTCGAAAGAAGAGTATGATATGTGTTTCTCTCACACCAGTTGAAGTAAATGTTTCATTTATGACCGTCAATCCAGTATTCACTTAAATTTCCTTGAATTGTATCTGAAGACTAATTTGCAACACTTTTTCCACCATGAAATCAGGATATCCAAGTTACTTTGCGGGATGAAATCAAAAGTGCATGCGAGTATCGTCCATTTGAGAAATGTGATTATAGTTCAAGGATTACTAATGAACTTTGCTGCAAGAAACTGGAATACATGATTTCGAAGTTGGATGGAATGAAACAAACCATCGATGACTGTCATCAAGTGAAAATCGAAGATGCTTGAGGCATATGTCCTAGTGAGCTGCTAATCTAATTATTTGTCCCATATGGGGCTGTAGAAACAAAAGGTTGAAGGGGGAACTTAGTCATGTATGTGTATGATCTCAATTAGAGCTGAGCATCCGCTTCTGCCTAATCGATCCTGCTGTATACTTAGTATATCTTTTCTATTATTCTATGTTTATTATCTGAGGTTTTTAATGTCATCAATTTTCGAAAAGGTGGCAAATCCTAATCTGGGCAGAACTTCTATCCTAAGGGATATTAATTGTTTTCCCTGTAATCTGTGGTCTTTTCTGTATTTGATGTAGGTTGTGTCTTATTGGCTGCATTCATTTTCCCTTTCTTCACATTGGAATTGGAAGCCAGATTCACCTGCTCAACAAAGGGAAGTATTCATTACTGAATTTTGATCTTCTTCAATGGATGATTATAATATAACAACCTGTTGTCTTTCTAGTTAACTTGAAACTAAGTCTGTTTTTATGGTTAGCTTGGAACTGAGTCTTAGTTAACAATTGGTTCCCTCCACCTTGGCTCCTAGGCTTTATACTATTCCTTGTTTAGAATATACTTCTTTTGTCGATTCTTATCGAAAAAAAAGTTATTCTCTTCCTTTTTTTGTTTCTTATATAAAAAAATCGTTATATGGTGGTGGAATTAGTTTTTCATTGAAGTAGAAATGTCTGAAGAGGGGTAGTAGAGCAAGGCTCCAAGTTTGGGAGTGAGAATTCTAATCTTTTTCATTTGCTTAGACTGCTTTGCCTTTATCTCTTTTAGTTTTTTCTTCAGCCAAAAGGAGTTGATTCTTTCAAGGTTGTGATCCCATAGAAGATACTTTTGAGAAATGTTTTGTTATCGTTGAAAAAAACATAAATCAAAAGAAGAGTCATAGTTGTCTTTAAGTTTAAGAACAATGTTTTCCCATTTTCTCTATGTATTTTCATGCATCTTTTTATTATTATTATTGTTTCTTTTTTCCAGAAAGTATATATAAGAACATTCTATACCATGC

mRNA sequence

GAAATTTGACACAACAAGAGAGCAACGACAACCCAAAGGAGTCAAATAAAAAAAATGAAGAGACATTTTTTTATTATTAAATGACAGTATTGTCCTTCCCTTGTATACTCAATTTAATCTAGAAGGGAGGCAATTTGTGAAATTAAAATAAAATTAAAAAAAAAAAAGTTTTTGCAATTTTACTTAAAATATATTAGATTTTTTGACGCAGGCACATAAGTGGACTCCACCGGCGCTGCCGCTCACCAGTTCCTTCAACTCTTGTTCGTCGGCCGAGATCAATTCGTATCAAATCCTCCATTGCTGTGAGATCTATCACAGCCTGCACTGCTCTTCATGGATCCGGTGACCCAGAATACTTCGTTGCAACGCCTTCAGAATGTGGAAAAGCGAATTGTGAGGGTTCTGGAGTTAGCAGGAGGAGTCATGGAAGAGCTTGCCAACCCTGCTGGTCCAAAAAAGGAAATTGTGAACAATCATTGCAGTGAGTTCATGCAATTCATTAAGGATATCCAAGTTACTTTGCGGGATGAAATCAAAAGTGCATGCGAGTATCGTCCATTTGAGAAATGTGATTATAGTTCAAGGATTACTAATGAACTTTGCTGCAAGAAACTGGAATACATGATTTCGAAGTTGGATGGAATGAAACAAACCATCGATGACTGTCATCAAGTGAAAATCGAAGATGCTTGAGGCATATGTCCTAGTTGTGTCTTATTGGCTGCATTCATTTTCCCTTTCTTCACATTGGAATTGGAAGCCAGATTCACCTGCTCAACAAAGGGAAGTATTCATTACTGAATTTTGATCTTCTTCAATGGATGATTATAATATAACAACCTGTTGTCTTTCTAGTTAACTTGAAACTAAGTCTGTTTTTATGGTTAGCTTGGAACTGAGTCTTAGTTAACAATTGGTTCCCTCCACCTTGGCTCCTAGGCTTTATACTATTCCTTGTTTAGAATATACTTCTTTTGTCGATTCTTATCGAAAAAAAAGTTATTCTCTTCCTTTTTTTGTTTCTTATATAAAAAAATCGTTATATGGTGGTGGAATTAGTTTTTCATTGAAGTAGAAATGTCTGAAGAGGGGTAGTAGAGCAAGGCTCCAAGTTTGGGAGTGAGAATTCTAATCTTTTTCATTTGCTTAGACTGCTTTGCCTTTATCTCTTTTAGTTTTTTCTTCAGCCAAAAGGAGTTGATTCTTTCAAGGTTGTGATCCCATAGAAGATACTTTTGAGAAATGTTTTGTTATCGTTGAAAAAAACATAAATCAAAAGAAGAGTCATAGTTGTCTTTAAGTTTAAGAACAATGTTTTCCCATTTTCTCTATGTATTTTCATGCATCTTTTTATTATTATTATTGTTTCTTTTTTCCAGAAAGTATATATAAGAACATTCTATACCATGC

Coding sequence (CDS)

ATGGATCCGGTGACCCAGAATACTTCGTTGCAACGCCTTCAGAATGTGGAAAAGCGAATTGTGAGGGTTCTGGAGTTAGCAGGAGGAGTCATGGAAGAGCTTGCCAACCCTGCTGGTCCAAAAAAGGAAATTGTGAACAATCATTGCAGTGAGTTCATGCAATTCATTAAGGATATCCAAGTTACTTTGCGGGATGAAATCAAAAGTGCATGCGAGTATCGTCCATTTGAGAAATGTGATTATAGTTCAAGGATTACTAATGAACTTTGCTGCAAGAAACTGGAATACATGATTTCGAAGTTGGATGGAATGAAACAAACCATCGATGACTGTCATCAAGTGAAAATCGAAGATGCTTGA

Protein sequence

MDPVTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPKKEIVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDCHQVKIEDA
Homology
[Close]
BLAST of Sed0027170 vs. NCBI nr
Match: XP_022142440.1 (mediator of RNA polymerase II transcription subunit 11 [Momordica charantia] >XP_022142441.1 mediator of RNA polymerase II transcription subunit 11 [Momordica charantia])

HSP 1 Score: 229.2 bits (583), Expect = 1.9e-56
Identity = 112/119 (94.12%), Postives = 117/119 (98.32%), Query Frame = 0 

Query: 1   MDPVTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPKKEIVNNHCSEFMQFIKDIQ 60
           MDP+TQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGP+KE VNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDCHQVKIEDA 120
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID+ +QVK+EDA
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDE-YQVKVEDA 118

[Close]
BLAST of Sed0027170 vs. NCBI nr
Match: XP_023520392.1 (mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023520393.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228.4 bits (581), Expect = 3.2e-56
Identity = 112/119 (94.12%), Postives = 117/119 (98.32%), Query Frame = 0 

Query: 1   MDPVTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPKKEIVNNHCSEFMQFIKDIQ 60
           MDP+TQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGP+KE VNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDCHQVKIEDA 120
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID+ +QVK+EDA
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDE-YQVKMEDA 118

[Close]
BLAST of Sed0027170 vs. NCBI nr
Match: XP_022927640.1 (mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita moschata] >XP_022927641.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita moschata] >KAG6583673.1 Mediator of RNA polymerase II transcription subunit 11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 227.3 bits (578), Expect = 7.2e-56
Identity = 111/119 (93.28%), Postives = 117/119 (98.32%), Query Frame = 0 

Query: 1   MDPVTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPKKEIVNNHCSEFMQFIKDIQ 60
           MDP+TQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGP+KE VNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDCHQVKIEDA 120
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID+ +QVK+ED+
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDE-YQVKMEDS 118

[Close]
BLAST of Sed0027170 vs. NCBI nr
Match: XP_008442051.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo] >XP_008442052.1 PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo] >XP_016899531.1 PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo])

HSP 1 Score: 225.7 bits (574), Expect = 2.1e-55
Identity = 111/119 (93.28%), Postives = 115/119 (96.64%), Query Frame = 0 

Query: 1   MDPVTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPKKEIVNNHCSEFMQFIKDIQ 60
           MDP  QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGP+KE VNNHCSEFMQFIKDIQ
Sbjct: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDCHQVKIEDA 120
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDD +QVK+ED+
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDD-YQVKMEDS 118

[Close]
BLAST of Sed0027170 vs. NCBI nr
Match: XP_004144648.1 (mediator of RNA polymerase II transcription subunit 11 [Cucumis sativus] >XP_011653961.1 mediator of RNA polymerase II transcription subunit 11 [Cucumis sativus] >XP_031740627.1 mediator of RNA polymerase II transcription subunit 11 [Cucumis sativus] >KAE8649777.1 hypothetical protein Csa_012388 [Cucumis sativus])

HSP 1 Score: 224.6 bits (571), Expect = 4.7e-55
Identity = 110/119 (92.44%), Postives = 114/119 (95.80%), Query Frame = 0 

Query: 1   MDPVTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPKKEIVNNHCSEFMQFIKDIQ 60
           MDP   NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGP+KE VNNHCSEFMQFIKDIQ
Sbjct: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDCHQVKIEDA 120
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYM+SKLDGMKQTIDD +QVKIED+
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMVSKLDGMKQTIDD-YQVKIEDS 118

[Close]
BLAST of Sed0027170 vs. ExPASy Swiss-Prot
Match: Q6ID77 (Mediator of RNA polymerase II transcription subunit 11 OS=Arabidopsis thaliana OX=3702 GN=MED11 PE=1 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.0e-44
Identity = 83/109 (76.15%), Postives = 100/109 (91.74%), Query Frame = 0 

Query: 1   MDPVTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPKKEIVNNHCSEFMQFIKDIQ 60
           MDP TQNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GPKKE VN+HC EFMQ +KDIQ
Sbjct: 1   MDPQTQNTSLQRLQNVENRVVKVLELAGGVMEELASPSGPKKEFVNSHCREFMQSMKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID 110
           VTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEY++++L+ +KQT D
Sbjct: 61  VTLREEIKSACEYRPFEKCDYNARIANEICFQKLEYVLTQLEDLKQTAD 109

[Close]
BLAST of Sed0027170 vs. ExPASy TrEMBL
Match: A0A6J1CKY4 (Mediator of RNA polymerase II transcription subunit 11 OS=Momordica charantia OX=3673 GN=LOC111012572 PE=3 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 9.2e-57
Identity = 112/119 (94.12%), Postives = 117/119 (98.32%), Query Frame = 0 

Query: 1   MDPVTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPKKEIVNNHCSEFMQFIKDIQ 60
           MDP+TQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGP+KE VNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDCHQVKIEDA 120
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID+ +QVK+EDA
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDE-YQVKVEDA 118

[Close]
BLAST of Sed0027170 vs. ExPASy TrEMBL
Match: A0A6J1EPJ1 (Mediator of RNA polymerase II transcription subunit 11 OS=Cucurbita moschata OX=3662 GN=LOC111434405 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 3.5e-56
Identity = 111/119 (93.28%), Postives = 117/119 (98.32%), Query Frame = 0 

Query: 1   MDPVTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPKKEIVNNHCSEFMQFIKDIQ 60
           MDP+TQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGP+KE VNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDCHQVKIEDA 120
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID+ +QVK+ED+
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDE-YQVKMEDS 118

[Close]
BLAST of Sed0027170 vs. ExPASy TrEMBL
Match: A0A1S3B5G7 (Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis melo OX=3656 GN=LOC103486032 PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.0e-55
Identity = 111/119 (93.28%), Postives = 115/119 (96.64%), Query Frame = 0 

Query: 1   MDPVTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPKKEIVNNHCSEFMQFIKDIQ 60
           MDP  QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGP+KE VNNHCSEFMQFIKDIQ
Sbjct: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDCHQVKIEDA 120
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDD +QVK+ED+
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDD-YQVKMEDS 118

[Close]
BLAST of Sed0027170 vs. ExPASy TrEMBL
Match: A0A6J1I6T5 (Mediator of RNA polymerase II transcription subunit 11 OS=Cucurbita maxima OX=3661 GN=LOC111471674 PE=3 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 3.9e-55
Identity = 110/119 (92.44%), Postives = 115/119 (96.64%), Query Frame = 0 

Query: 1   MDPVTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPKKEIVNNHCSEFMQFIKDIQ 60
           MDP+TQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGP+KE VNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDCHQVKIEDA 120
           VTLRDEIKSACEYRPFEKCDYSSRI NELCCKKLEYMI KLDGMKQTID+ +QVK+EDA
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRIINELCCKKLEYMILKLDGMKQTIDE-YQVKMEDA 118

[Close]
BLAST of Sed0027170 vs. ExPASy TrEMBL
Match: A0A0A0L450 (Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis sativus OX=3659 GN=MED11 PE=3 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.5e-51
Identity = 110/141 (78.01%), Postives = 114/141 (80.85%), Query Frame = 0 

Query: 1   MDPVTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPKKEIVNNHCSEFMQFIK--- 60
           MDP   NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGP+KE VNNHCSEFMQFIK   
Sbjct: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQR 60

Query: 61  -------------------DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMI 120
                              DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYM+
Sbjct: 61  NLTKEEEWRSKMEHHDQDLDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMV 120

[Close]
BLAST of Sed0027170 vs. TAIR 10
Match: AT3G01435.1 (Expressed protein )

HSP 1 Score: 180.6 bits (457), Expect = 7.2e-46
Identity = 83/109 (76.15%), Postives = 100/109 (91.74%), Query Frame = 0 

Query: 1   MDPVTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPKKEIVNNHCSEFMQFIKDIQ 60
           MDP TQNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GPKKE VN+HC EFMQ +KDIQ
Sbjct: 1   MDPQTQNTSLQRLQNVENRVVKVLELAGGVMEELASPSGPKKEFVNSHCREFMQSMKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID 110
           VTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEY++++L+ +KQT D
Sbjct: 61  VTLREEIKSACEYRPFEKCDYNARIANEICFQKLEYVLTQLEDLKQTAD 109

The following BLAST results are available for this feature:
BLAST of Sed0027170 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022142440.11.9e-5694.12mediator of RNA polymerase II transcription subunit 11 [Momordica charantia] >XP... [more]
XP_023520392.13.2e-5694.12mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pep... [more]
XP_022927640.17.2e-5693.28mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita mos... [more]
XP_008442051.12.1e-5593.28PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo]... [more]
XP_004144648.14.7e-5592.44mediator of RNA polymerase II transcription subunit 11 [Cucumis sativus] >XP_011... [more]
BLAST of Sed0027170 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6ID771.0e-4476.15Mediator of RNA polymerase II transcription subunit 11 OS=Arabidopsis thaliana O... [more]
BLAST of Sed0027170 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CKY49.2e-5794.12Mediator of RNA polymerase II transcription subunit 11 OS=Momordica charantia OX... [more]
A0A6J1EPJ13.5e-5693.28Mediator of RNA polymerase II transcription subunit 11 OS=Cucurbita moschata OX=... [more]
A0A1S3B5G71.0e-5593.28Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis melo OX=3656 G... [more]
A0A6J1I6T53.9e-5592.44Mediator of RNA polymerase II transcription subunit 11 OS=Cucurbita maxima OX=36... [more]
A0A0A0L4501.5e-5178.01Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis sativus OX=365... [more]
BLAST of Sed0027170 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G01435.17.2e-4676.15Expressed protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019404Mediator complex, subunit Med11PFAMPF10280Med11coord: 8..101
e-value: 2.0E-13
score: 50.9
IPR019404Mediator complex, subunit Med11PANTHERPTHR22890UNCHARACTERIZEDcoord: 1..113
NoneNo IPR availableGENE3D1.10.287.3490coord: 7..75
e-value: 8.8E-7
score: 31.3
NoneNo IPR availablePANTHERPTHR22890:SF2MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 11coord: 1..113

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0027170.1Sed0027170.1mRNA
Sed0027170.2Sed0027170.2mRNA
Sed0027170.3Sed0027170.3mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription by RNA polymerase II
cellular_component GO:0016592 mediator complex
molecular_function GO:0003712 transcription coregulator activity