Sed0027162 (gene) Chayote v1

Overview
NameSed0027162
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG07: 3878192 .. 3879330 (+)
RNA-Seq ExpressionSed0027162
SyntenySed0027162
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGCAAAGGGTCATTTGCGGTATTATTCAGTGCCTTCTTCTCTTCCCCGATCTCAATTTTTCTCTCTTCCCTTCCGCCCTCTTTCTCCGCCGTTCACGGCCGCCGGAGCTACTTCTTCACTCTCCTCTCAACCAATCCCCAACCACTATTCCCCTCAATTTCATCTCATTCTTTGATTTGATCCTCACAACCCGTTTTCGCTCTCTCCATCTCCTCCCGTTTTCCGGCGAATCTTTGGTTTTCTTCTACTCGTTTCCGCTGAGGTTTGTTTTTTGTTTCTATGTTTCTGGAATGGATTTCTTTCGAGTTTTTTCTTGTTTTGGACACTGCCTTGTTTTGGAATGGGTTCTCAGTTCTGTGATTGATGGCTGTGTTTAGGGTTTCTTCGCTCGAGCTTTATTGGGTGCTTTGAATTGTATTTTTGTTTCTTGGTTCTTGCGGAATTTTGTAGCTCGAGTTGAATTGGCCTTTTTGGGGATTGTGGTTGGGATTGGGATTGGTGTTCTTTGTTTCCCGCTTGTTTTATTCTTGGGTTTCATTTGGATGAGAATGGTTTTAGCATAGTTCCTGATTCATTTGCTTTTTAATTTTAACCAGTAGTCCATTGTATGACTTAAATTTTTTGTGTGTATATGATTTTCTTGTTATGTGCATGATTTTCTAACAAACTTACAAATAGAATTGTTCTAAGGACCCAATTACTCCTACAAATTCTATTAAAATTTACTTTCTCCACTTAGAATCATTAAGTGTGATAAGGATAGCATATCGATATGTAACTTAGTAATTTCTCTGATATATTTTCTGTTCATGAGTTTGTCTAATGAAGTTATGCAGGTTTATGTTTTATTCCTTTGTTTGACTCGTACTTAGGAAAGCCCAAAATTTGTTTACTTTTTTTTCCTTTAAATTATGGGCAATGTATTTTAGCTCTTTTTGTATAGATTGTCTTTTTTAATTTTTATCTCTTGAATTGAAAAGAAGGTTCATTTCATTTTATCCACGAAGGAGAATTTTAGTTTTTCATTATTATAAAAGATAGAGAAAAAGTATGCTATATTGGAAGTAATCTCTGTACTCTTGGTTTTTATGATTGCAGTTATAATGTAATGCGACATTGTTCCAAGGAAGAGTGA

mRNA sequence

ATGTGGCAAAGGGTCATTTGCGGTATTATTCAGTGCCTTCTTCTCTTCCCCGATCTCAATTTTTCTCTCTTCCCTTCCGCCCTCTTTCTCCGCCGTTCACGGCCGCCGGAGCTACTTCTTCACTCTCCTCTCAACCAATCCCCAACCACTATTCCCCTCAATTTCATCTCATTCTTTGATTTGATCCTCACAACCCGTTTTCGCTCTCTCCATCTCCTCCCGTTTTCCGGCGAATCTTTGGTTTTCTTCTACTCGTTTCCGCTGAGTTATAATGTAATGCGACATTGTTCCAAGGAAGAGTGA

Coding sequence (CDS)

ATGTGGCAAAGGGTCATTTGCGGTATTATTCAGTGCCTTCTTCTCTTCCCCGATCTCAATTTTTCTCTCTTCCCTTCCGCCCTCTTTCTCCGCCGTTCACGGCCGCCGGAGCTACTTCTTCACTCTCCTCTCAACCAATCCCCAACCACTATTCCCCTCAATTTCATCTCATTCTTTGATTTGATCCTCACAACCCGTTTTCGCTCTCTCCATCTCCTCCCGTTTTCCGGCGAATCTTTGGTTTTCTTCTACTCGTTTCCGCTGAGTTATAATGTAATGCGACATTGTTCCAAGGAAGAGTGA

Protein sequence

MWQRVICGIIQCLLLFPDLNFSLFPSALFLRRSRPPELLLHSPLNQSPTTIPLNFISFFDLILTTRFRSLHLLPFSGESLVFFYSFPLSYNVMRHCSKEE
Homology
[Close]
BLAST of Sed0027162 vs. NCBI nr
Match: KAG7025473.1 (hypothetical protein SDJN02_11968, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 57.8 bits (138), Expect = 6.3e-05
Identity = 46/101 (45.54%), Postives = 52/101 (51.49%), Query Frame = 0 

Query: 1  MWQRVICGIIQC--------LLLFPDLNFSLFPSALFLRRSRPPELLLHSPLNQSPTTIP 60
          MWQRVI  IIQC         LLFPDLNF    S L LR SRPPELLLHSP   +P + P
Sbjct: 1  MWQRVIRSIIQCPLSSLLFSSLLFPDLNF--LSSPLSLRCSRPPELLLHSP--HTPFSTP 60

Query: 61 LNFISFFDLILTTRFRSLHLLPFSGESLVFFYSFPLSYNVM 94
            F   F LIL           F   +L F  +F +SY  +
Sbjct: 61 --FSPQFHLILR----------FDSRNLCFSIAFSISYRFL 85

The following BLAST results are available for this feature:
BLAST of Sed0027162 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7025473.16.3e-0545.54hypothetical protein SDJN02_11968, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Sed0027162 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0027162 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0027162 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0027162.1Sed0027162.1mRNA