Sed0027149 (gene) Chayote v1

Overview


Name	Sed0027149
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG12: 5627584 .. 5629568 (+)
RNA-Seq Expression	Sed0027149
Synteny	Sed0027149

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCATGTTCATTCAATTACTGAAGTTGACTGCAGGAAATTTTATTCCCTTTTCCTTTTCTGTCAACATTTTTATGAATTTCTTGAAAAATACAGGAAAGGGAACTGCATTGAAATGTTGAACAGTCTACAAAGGAGATGTTTGGCTTGTAGATAAGATTTGTGTATTTCGACCATGAAAGACTAATCTGAATCGAACTACAAGCCAAACATTTCTTATTCGTCGTTTATGTTCCTTAACAACACAAATGCAACTGGCTCGAGATGTGCACCCGCTGCTGAGACTAATGGTCTTAAACAGCTCACTGATGCACGGATGAGTACCGATGACAGTTGGCTAGCTAGATAGATCTCCCATTAACAACAATACAGATCATTTCTTGCTTTTGAATACTTATCTTAGATTCATAATCTTACTTGTAATATTCACATGCTAATCAGATTTGCTTTGATGAACAGGAAATCCATTAAAGAAATAGAGCACAAAATCTCAAGTGCGCTAAAGATCTAAGGCAATCTTTGGCATGGAGATGGTGGTTGGTGTTGGGGAAGATCTGTGCCGGCAACCGATCCTCATCTTTTCCCCAACTGGATACACTTTGTAATGAATCTTGTGGGGTCTCTTAAAGTTGTAGACAGATTGGCCAGCTGTGGCCAATGACCCACCATCTCACATGCTCAGCCAATGTGGTTATAACTCTCCCATCACTCCCTTTTTTCGTCATCTAAATTATATATATATATATATATATGCTCTCTAGGAGAGAGAGAGATTGAAAAAAAAAGGAAAAAGTGTGTGCATGTGTTGTAACACTTGTAATTCTCTCTTTAGTTCTTTTGCTTAACATACACCCTCTCCCTGCTAGCTAACTCTCTTGTTGCAGCTCTGAGTTTATACAACATGGAAGTAGCTTTTGAACTTGATGATGATTTGTTCTTTGCTGATTTGAGCAGACAGCTCTCTCTTCTTCTCATGGATGACAACGAAGACCCTCTCCCTCGTCATCCACATGCTTCGCTTCAGGTACGAGCATAGTTCTAGCCGCATCATATATCATCTAGTAACCAAGAGGGTACATATTCATAATTTCAAAAAAGAAGATACTTCCTTTAATTCAGTATCAACATGAACATAGTTCAACCGTTAATACTTTCTCAGCATTCGTAGTTTCGAATCTCCCATCAAGGTGGTGGGATGTAATATTTTTCAGTTTTCAATCACTTGGGTATTTCCCAATCTTTTGAAGATCAACTAGTTTTTTTAGTCTCTGTTGTGGCTGTGAATTCAAACAAGCTTGATCAATTTGCAGGCTTTCTCTCATGTTGCCCACCAGCCCACACAGCCACTGGTGGTGCACGACCGAGCTTCCGCTGCTGCTGCCGTTGTCGCTGCCTACAGCGGCGTAAGCAAGGGCACCGGCGTGTTCATCCCTAGGTCTCTCCAGCCTGCAAGAAAACAGAGGCGTGGAAGATACAATCACATAAAGGCAAACCGACAGTTTCCAATCGCTATTGATGCGAACTCACAATTATCCAACAGCAATTCGTTGCGTCCCAGAAAGGTTTAAGGATTCCAAGTATTTGACCTCAAAAGGGTATCTATCAGAATTCAGATAAAAAAATAATTCTTTCACCAAATATTAAAGTATGGTGATGCTGTACATGGAAGAAGCTTATAGTATAGTATTAGCTCTGTTAATTACTGGGTCTTGATTGGTTTACGTGGTTCATTGGAAGGCTAATTAACCTAAGGTTTGTGAAGCTCCTCTCCCCTTGTGAAAAATTCATGGCTGTTCTAATAATATGACTACTTTATTCTTCCTCTGTTTTGTTTTCTTTCCTATTTTTTTTGTACAAGAGAAAAAGAATGAACTTTCTTACAAGTTAGGGTGTGTTTTGTTGATCTTGATCTAAATCTTAGTTTAAGCATAATTCACTAATTAGATTATGTCAATAATTAATAGTAAGATGTGTTAATTAAATCTAC

mRNA sequence

TGCATGTTCATTCAATTACTGAAGTTGACTGCAGGAAATTTTATTCCCTTTTCCTTTTCTGTCAACATTTTTATGAATTTCTTGAAAAATACAGGAAAGGGAACTGCATTGAAATGTTGAACAGTCTACAAAGGAGATGTTTGGCTTGTAGATAAGATTTGTGTATTTCGACCATGAAAGACTAATCTGAATCGAACTACAAGCCAAACATTTCTTATTCGTCGTTTATGTTCCTTAACAACACAAATGCAACTGGCTCGAGATGTGCACCCGCTGCTGAGACTAATGGTCTTAAACAGCTCACTGATGCACGGATGAGTACCGATGACAGTTGGCTAGCTAGATAGATCTCCCATTAACAACAATACAGATCATTTCTTGCTTTTGAATACTTATCTTAGATTCATAATCTTACTTGTAATATTCACATGCTAATCAGATTTGCTTTGATGAACAGGAAATCCATTAAAGAAATAGAGCACAAAATCTCAAGTGCGCTAAAGATCTAAGGCAATCTTTGGCATGGAGATGGTGGTTGGTGTTGGGGAAGATCTGTGCCGGCAACCGATCCTCATCTTTTCCCCAACTGGATACACTTTGTAATGAATCTTGTGGGGTCTCTTAAAGTTGTAGACAGATTGGCCAGCTGTGGCCAATGACCCACCATCTCACATGCTCAGCCAATGTGACAGCTCTCTCTTCTTCTCATGGATGACAACGAAGACCCTCTCCCTCGTCATCCACATGCTTCGCTTCAGGCTTTCTCTCATGTTGCCCACCAGCCCACACAGCCACTGGTGGTGCACGACCGAGCTTCCGCTGCTGCTGCCGTTGTCGCTGCCTACAGCGGCGTAAGCAAGGGCACCGGCGTGTTCATCCCTAGGTCTCTCCAGCCTGCAAGAAAACAGAGGCGTGGAAGATACAATCACATAAAGGCAAACCGACAGTTTCCAATCGCTATTGATGCGAACTCACAATTATCCAACAGCAATTCGTTGCGTCCCAGAAAGGTTTAAGGATTCCAAGTATTTGACCTCAAAAGGGTATCTATCAGAATTCAGATAAAAAAATAATTCTTTCACCAAATATTAAAGTATGGTGATGCTGTACATGGAAGAAGCTTATAGTATAGTATTAGCTCTGTTAATTACTGGGTCTTGATTGGTTTACGTGGTTCATTGGAAGGCTAATTAACCTAAGGTTTGTGAAGCTCCTCTCCCCTTGTGAAAAATTCATGGCTGTTCTAATAATATGACTACTTTATTCTTCCTCTGTTTTGTTTTCTTTCCTATTTTTTTTGTACAAGAGAAAAAGAATGAACTTTCTTACAAGTTAGGGTGTGTTTTGTTGATCTTGATCTAAATCTTAGTTTAAGCATAATTCACTAATTAGATTATGTCAATAATTAATAGTAAGATGTGTTAATTAAATCTAC

Coding sequence (CDS)

ATGGATGACAACGAAGACCCTCTCCCTCGTCATCCACATGCTTCGCTTCAGGCTTTCTCTCATGTTGCCCACCAGCCCACACAGCCACTGGTGGTGCACGACCGAGCTTCCGCTGCTGCTGCCGTTGTCGCTGCCTACAGCGGCGTAAGCAAGGGCACCGGCGTGTTCATCCCTAGGTCTCTCCAGCCTGCAAGAAAACAGAGGCGTGGAAGATACAATCACATAAAGGCAAACCGACAGTTTCCAATCGCTATTGATGCGAACTCACAATTATCCAACAGCAATTCGTTGCGTCCCAGAAAGGTTTAA

Protein sequence

MDDNEDPLPRHPHASLQAFSHVAHQPTQPLVVHDRASAAAAVVAAYSGVSKGTGVFIPRSLQPARKQRRGRYNHIKANRQFPIAIDANSQLSNSNSLRPRKV

Homology

[Close]

BLAST of Sed0027149 vs. NCBI nr
Match: XP_022933798.1 (uncharacterized protein LOC111441102 [Cucurbita moschata] >XP_022933806.1 uncharacterized protein LOC111441102 [Cucurbita moschata])

HSP 1 Score: 164.9 bits (416), Expect = 3.8e-37
Identity = 82/101 (81.19%), Postives = 90/101 (89.11%), Query Frame = 0


Query: 1   MDDNEDPLPRHPHASLQAFSHVAHQPTQPLVVHDRASAAAAVVAAYSGVSKGTGVFIPRS 60
           MDDNEDPLP HPH SLQA +H  HQP +PL VHD+  AAAA+V AYSGVSKGTGVFIPRS
Sbjct: 25  MDDNEDPLPHHPHVSLQALAHGGHQPARPLAVHDQ--AAAAIVVAYSGVSKGTGVFIPRS 84

Query: 61  LQPARKQRRGRYNHIKANRQFPIAIDANSQLSNSNSLRPRK 102
           LQPARKQRRGRYN+IKANRQFPIAID NSQ+SN+NSLRP+K
Sbjct: 85  LQPARKQRRGRYNNIKANRQFPIAIDVNSQVSNNNSLRPKK 123

[Close]

BLAST of Sed0027149 vs. NCBI nr
Match: XP_022973676.1 (uncharacterized protein LOC111472261 [Cucurbita maxima])

HSP 1 Score: 164.5 bits (415), Expect = 4.9e-37
Identity = 81/101 (80.20%), Postives = 90/101 (89.11%), Query Frame = 0


Query: 1   MDDNEDPLPRHPHASLQAFSHVAHQPTQPLVVHDRASAAAAVVAAYSGVSKGTGVFIPRS 60
           MDDNEDPLP HPH SLQA +H  HQP +PL VHD+  AAAA+VAAYSGVSKGTGVFIPRS
Sbjct: 25  MDDNEDPLPHHPHVSLQALAHGGHQPARPLAVHDQ--AAAAIVAAYSGVSKGTGVFIPRS 84

Query: 61  LQPARKQRRGRYNHIKANRQFPIAIDANSQLSNSNSLRPRK 102
           LQPARKQRRGRYN+IKANRQFPI +D NSQ+SN+NSLRP+K
Sbjct: 85  LQPARKQRRGRYNNIKANRQFPITVDVNSQVSNNNSLRPKK 123

[Close]

BLAST of Sed0027149 vs. NCBI nr
Match: XP_023539236.1 (uncharacterized protein LOC111799938 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 164.5 bits (415), Expect = 4.9e-37
Identity = 82/101 (81.19%), Postives = 90/101 (89.11%), Query Frame = 0


Query: 1   MDDNEDPLPRHPHASLQAFSHVAHQPTQPLVVHDRASAAAAVVAAYSGVSKGTGVFIPRS 60
           MDDNEDPLP HPH SLQA +H  HQP +PL VHD+  AAAA+VAAYSGVSKGTGVFIPRS
Sbjct: 25  MDDNEDPLPHHPHVSLQALAHGGHQPARPLAVHDQ--AAAAIVAAYSGVSKGTGVFIPRS 84

Query: 61  LQPARKQRRGRYNHIKANRQFPIAIDANSQLSNSNSLRPRK 102
           LQPARKQRRGRYN+IKANRQFPIAID NSQ+SN+NSL P+K
Sbjct: 85  LQPARKQRRGRYNNIKANRQFPIAIDVNSQVSNNNSLHPKK 123

[Close]

BLAST of Sed0027149 vs. NCBI nr
Match: KAG6597461.1 (hypothetical protein SDJN03_10641, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 163.3 bits (412), Expect = 1.1e-36
Identity = 82/101 (81.19%), Postives = 90/101 (89.11%), Query Frame = 0


Query: 1   MDDNEDPLPRHPHASLQAFSHVAHQPTQPLVVHDRASAAAAVVAAYSGVSKGTGVFIPRS 60
           MDDNEDPLP HPH SLQA +H  HQP +PL VHD+  AAAA+VAAYSGVSKGTGVFIPRS
Sbjct: 36  MDDNEDPLPHHPHVSLQALAHGGHQPARPLAVHDQ--AAAAIVAAYSGVSKGTGVFIPRS 95

Query: 61  LQPARKQRRGRYNHIKANRQFPIAIDANSQLSNSNSLRPRK 102
           LQ ARKQRRGRYN+IKANRQFPIAID NSQ+SN+NSLRP+K
Sbjct: 96  LQSARKQRRGRYNNIKANRQFPIAIDVNSQVSNNNSLRPKK 134

[Close]

BLAST of Sed0027149 vs. NCBI nr
Match: KAG7028920.1 (hypothetical protein SDJN02_10103 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 163.3 bits (412), Expect = 1.1e-36
Identity = 82/101 (81.19%), Postives = 90/101 (89.11%), Query Frame = 0


Query: 1   MDDNEDPLPRHPHASLQAFSHVAHQPTQPLVVHDRASAAAAVVAAYSGVSKGTGVFIPRS 60
           MDDNEDPLP HPH SLQA +H  HQP +PL VHD+  AAAA+VAAYSGVSKGTGVFIPRS
Sbjct: 25  MDDNEDPLPHHPHVSLQALAHGGHQPARPLAVHDQ--AAAAIVAAYSGVSKGTGVFIPRS 84

Query: 61  LQPARKQRRGRYNHIKANRQFPIAIDANSQLSNSNSLRPRK 102
           LQ ARKQRRGRYN+IKANRQFPIAID NSQ+SN+NSLRP+K
Sbjct: 85  LQSARKQRRGRYNNIKANRQFPIAIDVNSQVSNNNSLRPKK 123

[Close]

BLAST of Sed0027149 vs. ExPASy TrEMBL
Match: A0A6J1F5U9 (uncharacterized protein LOC111441102 OS=Cucurbita moschata OX=3662 GN=LOC111441102 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.8e-37
Identity = 82/101 (81.19%), Postives = 90/101 (89.11%), Query Frame = 0


Query: 1   MDDNEDPLPRHPHASLQAFSHVAHQPTQPLVVHDRASAAAAVVAAYSGVSKGTGVFIPRS 60
           MDDNEDPLP HPH SLQA +H  HQP +PL VHD+  AAAA+V AYSGVSKGTGVFIPRS
Sbjct: 25  MDDNEDPLPHHPHVSLQALAHGGHQPARPLAVHDQ--AAAAIVVAYSGVSKGTGVFIPRS 84

Query: 61  LQPARKQRRGRYNHIKANRQFPIAIDANSQLSNSNSLRPRK 102
           LQPARKQRRGRYN+IKANRQFPIAID NSQ+SN+NSLRP+K
Sbjct: 85  LQPARKQRRGRYNNIKANRQFPIAIDVNSQVSNNNSLRPKK 123

[Close]

BLAST of Sed0027149 vs. ExPASy TrEMBL
Match: A0A6J1I9A5 (uncharacterized protein LOC111472261 OS=Cucurbita maxima OX=3661 GN=LOC111472261 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.4e-37
Identity = 81/101 (80.20%), Postives = 90/101 (89.11%), Query Frame = 0


Query: 1   MDDNEDPLPRHPHASLQAFSHVAHQPTQPLVVHDRASAAAAVVAAYSGVSKGTGVFIPRS 60
           MDDNEDPLP HPH SLQA +H  HQP +PL VHD+  AAAA+VAAYSGVSKGTGVFIPRS
Sbjct: 25  MDDNEDPLPHHPHVSLQALAHGGHQPARPLAVHDQ--AAAAIVAAYSGVSKGTGVFIPRS 84

Query: 61  LQPARKQRRGRYNHIKANRQFPIAIDANSQLSNSNSLRPRK 102
           LQPARKQRRGRYN+IKANRQFPI +D NSQ+SN+NSLRP+K
Sbjct: 85  LQPARKQRRGRYNNIKANRQFPITVDVNSQVSNNNSLRPKK 123

[Close]

BLAST of Sed0027149 vs. ExPASy TrEMBL
Match: A0A0A0LAE7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G149910 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 9.7e-31
Identity = 76/102 (74.51%), Postives = 87/102 (85.29%), Query Frame = 0


Query: 1   MDDNEDPLPRHPHASLQAFSHVAHQPTQPLVVHDRASAAAAVVAAYSGVSKGTGVFIPRS 60
           MDDNEDPLP HPH SLQA SH  H PT+PL  H+ A AAAAV AAY+GVSKGTGVFIPRS
Sbjct: 25  MDDNEDPLP-HPHVSLQALSHGVHYPTRPLATHEHA-AAAAVAAAYNGVSKGTGVFIPRS 84

Query: 61  LQPARKQRRGRYNHIKANRQFPIAIDANSQL-SNSNSLRPRK 102
           LQPARKQRRGR+N+IK NRQF I+ID NSQ+ SN++S+RP+K
Sbjct: 85  LQPARKQRRGRHNNIKPNRQFHISIDVNSQVPSNNHSMRPKK 124

[Close]

BLAST of Sed0027149 vs. ExPASy TrEMBL
Match: A0A5D3D068 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00190 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.1e-29
Identity = 75/102 (73.53%), Postives = 85/102 (83.33%), Query Frame = 0


Query: 1   MDDNEDPLPRHPHASLQAFSHVAHQPTQPLVVHDRASAAAAVVAAYSGVSKGTGVFIPRS 60
           MDDNEDPLPR PH SLQA SH  H PT+PL  H+   AAAAV AAY+GVSKGTGVFIPRS
Sbjct: 25  MDDNEDPLPR-PHVSLQALSHGVHYPTRPLATHEH--AAAAVAAAYNGVSKGTGVFIPRS 84

Query: 61  LQPARKQRRGRYNHIKANRQFPIAIDANSQLSNSNSL-RPRK 102
           LQPARKQRRGR+N+IK NRQF I+ID NSQ+S++N L RP+K
Sbjct: 85  LQPARKQRRGRHNNIKPNRQFHISIDVNSQVSSNNHLMRPKK 123

[Close]

BLAST of Sed0027149 vs. ExPASy TrEMBL
Match: A0A1S3AX25 (uncharacterized protein LOC103483733 OS=Cucumis melo OX=3656 GN=LOC103483733 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.1e-29
Identity = 75/102 (73.53%), Postives = 85/102 (83.33%), Query Frame = 0


Query: 1   MDDNEDPLPRHPHASLQAFSHVAHQPTQPLVVHDRASAAAAVVAAYSGVSKGTGVFIPRS 60
           MDDNEDPLPR PH SLQA SH  H PT+PL  H+   AAAAV AAY+GVSKGTGVFIPRS
Sbjct: 25  MDDNEDPLPR-PHVSLQALSHGVHYPTRPLATHEH--AAAAVAAAYNGVSKGTGVFIPRS 84

Query: 61  LQPARKQRRGRYNHIKANRQFPIAIDANSQLSNSNSL-RPRK 102
           LQPARKQRRGR+N+IK NRQF I+ID NSQ+S++N L RP+K
Sbjct: 85  LQPARKQRRGRHNNIKPNRQFHISIDVNSQVSSNNHLMRPKK 123

The following BLAST results are available for this feature:

BLAST of Sed0027149 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933798.1	3.8e-37	81.19	uncharacterized protein LOC111441102 [Cucurbita moschata] >XP_022933806.1 unchar...	[more]
XP_022973676.1	4.9e-37	80.20	uncharacterized protein LOC111472261 [Cucurbita maxima]	[more]
XP_023539236.1	4.9e-37	81.19	uncharacterized protein LOC111799938 [Cucurbita pepo subsp. pepo]	[more]
KAG6597461.1	1.1e-36	81.19	hypothetical protein SDJN03_10641, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7028920.1	1.1e-36	81.19	hypothetical protein SDJN02_10103 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Sed0027149 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0027149 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F5U9	1.8e-37	81.19	uncharacterized protein LOC111441102 OS=Cucurbita moschata OX=3662 GN=LOC1114411...	[more]
A0A6J1I9A5	2.4e-37	80.20	uncharacterized protein LOC111472261 OS=Cucurbita maxima OX=3661 GN=LOC111472261...	[more]
A0A0A0LAE7	9.7e-31	74.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G149910 PE=4 SV=1	[more]
A0A5D3D068	1.1e-29	73.53	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3AX25	1.1e-29	73.53	uncharacterized protein LOC103483733 OS=Cucumis melo OX=3656 GN=LOC103483733 PE=...	[more]

BLAST of Sed0027149 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34956	OS05G0397300 PROTEIN	coord: 1..116
None	No IPR available	PANTHER	PTHR34956:SF2	OS05G0397300 PROTEIN	coord: 1..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0027149.1	Sed0027149.1	mRNA
Sed0027149.2	Sed0027149.2	mRNA