Sed0027102 (gene) Chayote v1

Overview
NameSed0027102
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG07: 37636066 .. 37638025 (-)
RNA-Seq ExpressionSed0027102
SyntenySed0027102
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGAAGAAGAATAGAGATGGCGTTGATTTTGATGGTGATTTATTCGTCCATGCCGGCTTCCTTTGCTTTTACACAAATCTCTACCACAGGTCAATTTCCCTTATGATCATCTCTTTTTATTCCAATATTATATATACATATATATAAATAAGTATATGGTATATTTCTTCTTTTAGCTCAAATATTTTTTGAGTGGGAAGTTGATTGGTGGTCTTGTTCATTGAATTATGCTACAAAATATTTCAAAGTTAAATTTAGATTAGTAGTTCTTTTCCTATTCGTTTACTTTTCTTATTTTGGGTTGTAGCTTCGGACTAAATTTAAGATCAGTGTCTAATCTATTGTTTTTTTTCCTTTCCATATTTGTAACTGTCTCGAACACCGAATACTTTATAATCTTGCAACATTTTAATGTTAAGTAAAGTGATAAAAAAATTAATATTTAGATATGTGACCACCATAAATTAAATTTATAACGTCTTATAATTATTTTTTTTTACTAACGAAACAAACTAAACCAAATAAAATTATAATATCTTACCAATTCTTCTAATATATATTTATTTATTTATGAAATCCCATGCTTGTAAATTTTGACAAAAAATTATGCATCATACTAATTTTTTCTGGAAAAAATTCATTATAAATTAACTTTGAGATACTTGTATTCAGCTTCTTCTTCTTTCTTTCTTTTTTCTTTTTTTTTCCCCTTAAATTTTATTTTCCAAAAATCGCCAACGCTAGACTAATGATTTCATAGAAAGATGATTCAATTATTGTTATGTCCTTTTTCAAGCCTGATACAAGAGGTCTACCTTTCTCTGTATATACTTTGGTCTTTATAATTGGAAAAGGTTAAATTTAGCCATTATAATTTTAAACTAAAATTTAGTTTTATCATTTTGATAAAACTTTAGAAAAAGTTCATGTAATATGATCCTAGTAAATTATAATTAAGAAGGTGGAAATAATCGTACAAATGATATTTCTTCATCATATCAGTTACTTAACCTACAGATGATTGAACTGGTAAGTGACACAATATTTTCATTGTTTTGGTTGTAGAACCCATGACCTCGAAGGGAACATACCCTCAATGCACAAGTCTTTAATTATTGTGACACCGCTAATCTATAATATTGTATTAATATACTATACTATACTAATAACATATAATATTGGTTCCCTCAAGGTCCTGAGTTTGAGTCTCCGATGTGACATTATTCCTTCGATTTTTTAGTTAGTATTAATACTACGAAATATACTGTATTAATACCCTAAATTATAGATGAATATTAATTGTACTGTATATTTGACTATGAATACAAATATTTTCAAAATTTGTCTAGATATGTTCCACCGCAATTTTCCTTTAAAATTTTATCAGATGAAAACTAAATTATCATTTTTAAAATTGCAAAAAAACTATTAACTTAGTAAAATCTAACATTCAAAATTACAAGATTAAATTCTACATTTTAAAACGATAAAAACTAAACTCGAACTTTTTTGGAGTGGTAGATATAAATTTATAGTTTATGTATTTATTTATTTTATTTCAGTGGATGGCAATGGTAAAAGAGATTATAATATAAGTGTTGCAGTATTTCATGAGGGCCGATCCGGAGGTAGAGGCGTAGTCCCAATATATGCTGCCGCTGCTTCTACACATCGCCGAGGAGAACATTACAGCGCAGCAAATAATCGCCATCAAAATTACTACATCCCGATATTATTTATAATTGTCGGAGTTCTTACCTTAAATATTGCATATTTTTGAGTTGGCGGTAGTGTTCAACTCGAGAGATTACAAGTTCGAATCTCTTGTATTTTTATCTAATAACCTAGAAATGGGGATTTGGTTCTCTCATATTTTTCTAATTTAAATCGCACAATTGACCTTATTCGAATGAATTTGCTTTCTTTTTCTTTTTAATACTTTTGTTTATTTGTTC

mRNA sequence

ATGGGAAGAAGAAGAATAGAGATGGCGTTGATTTTGATGGTGATTTATTCGTCCATGCCGGCTTCCTTTGCTTTTACACAAATCTCTACCACAGTGGATGGCAATGGTAAAAGAGATTATAATATAAGTGTTGCAGTATTTCATGAGGGCCGATCCGGAGGTAGAGGCGTAGTCCCAATATATGCTGCCGCTGCTTCTACACATCGCCGAGGAGAACATTACAGCGCAGCAAATAATCGCCATCAAAATTACTACATCCCGATATTATTTATAATTGTCGGAGTTCTTACCTTAAATATTGCATATTTTTGAGTTGGCGGTAGTGTTCAACTCGAGAGATTACAAGTTCGAATCTCTTGTATTTTTATCTAATAACCTAGAAATGGGGATTTGGTTCTCTCATATTTTTCTAATTTAAATCGCACAATTGACCTTATTCGAATGAATTTGCTTTCTTTTTCTTTTTAATACTTTTGTTTATTTGTTC

Coding sequence (CDS)

ATGGGAAGAAGAAGAATAGAGATGGCGTTGATTTTGATGGTGATTTATTCGTCCATGCCGGCTTCCTTTGCTTTTACACAAATCTCTACCACAGTGGATGGCAATGGTAAAAGAGATTATAATATAAGTGTTGCAGTATTTCATGAGGGCCGATCCGGAGGTAGAGGCGTAGTCCCAATATATGCTGCCGCTGCTTCTACACATCGCCGAGGAGAACATTACAGCGCAGCAAATAATCGCCATCAAAATTACTACATCCCGATATTATTTATAATTGTCGGAGTTCTTACCTTAAATATTGCATATTTTTGA

Protein sequence

MGRRRIEMALILMVIYSSMPASFAFTQISTTVDGNGKRDYNISVAVFHEGRSGGRGVVPIYAAAASTHRRGEHYSAANNRHQNYYIPILFIIVGVLTLNIAYF
Homology
[Close]
BLAST of Sed0027102 vs. NCBI nr
Match: KGN52709.2 (hypothetical protein Csa_008507 [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 6.1e-11
Identity = 52/98 (53.06%), Postives = 64/98 (65.31%), Query Frame = 0 

Query: 1  MGRRRIEMALILMVIYSSMPASFAFTQISTTVDGNGK---RDYNISVAVFHEGRSGGRGV 60
          MGRRR EMA IL+++ SSM ASFAFTQ+  T+D       R++N S   F E R GGRGV
Sbjct: 1  MGRRRGEMAFILVILCSSMMASFAFTQL-FTIDSKQHITVREHNNS--RFVERRGGGRGV 60

Query: 61 VPIYAAAASTHRRGEHYSAANNRHQNYYIPILFIIVGV 96
          +PIY A AS+ R G+H  +  NR  NY   I FII+GV
Sbjct: 61 IPIYVAGASSGRHGKHSHSLGNRPNNY---IEFIIIGV 92

[Close]
BLAST of Sed0027102 vs. ExPASy TrEMBL
Match: A0A0A0KTE6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613615 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.2e-05
Identity = 40/80 (50.00%), Postives = 49/80 (61.25%), Query Frame = 0 

Query: 19 MPASFAFTQISTTVDGNGK---RDYNISVAVFHEGRSGGRGVVPIYAAAASTHRRGEHYS 78
          M ASFAFTQ+  T+D       R++N S   F E R GGRGV+PIY A AS+ R G+H  
Sbjct: 1  MMASFAFTQL-FTIDSKQHITVREHNNS--RFVERRGGGRGVIPIYVAGASSGRHGKHSH 60

Query: 79 AANNRHQNYYIPILFIIVGV 96
          +  NR  NY   I FII+GV
Sbjct: 61 SLGNRPNNY---IEFIIIGV 74

The following BLAST results are available for this feature:
BLAST of Sed0027102 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN52709.26.1e-1153.06hypothetical protein Csa_008507 [Cucumis sativus][more]
BLAST of Sed0027102 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0027102 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KTE63.2e-0550.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613615 PE=4 SV=1[more]
BLAST of Sed0027102 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0027102.1Sed0027102.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
molecular_function GO:0004527 exonuclease activity
molecular_function GO:0003676 nucleic acid binding