Sed0027095 (gene) Chayote v1

Overview
NameSed0027095
Typegene
OrganismSechium edule (Chayote v1)
DescriptionGlycine cleavage system H protein
LocationLG08: 33871702 .. 33874918 (-)
RNA-Seq ExpressionSed0027095
SyntenySed0027095
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCATCTCCATCAACCCTACTAGTAACTCACTTTCCATAGCAAATAAAAGTCTCTTTCATCAAACTGTTTCTCACAAAGCGACGCCAATCCCAATAACCATTAGCGTCTGTTCAGAGCTCTCCAAGTTTCATCAATGGCGGCGAGCTTCATTTGGGCTTCAAGAGCTGCTTCATTCCTCAAGATCTCAATCCCCCACAGAGGTTTCGCTTCTGGTAAGCCCAACCCCCACATTTATATTTTCTCTATACCATTGATTTCTCAGTTTTCTTGTTGATTTTATTTTTGTGAATGATCGATCTGGTTTTCACCTTGGAAGATCTCAGTTTCCTTTGATGGGTTTTGTTTGTTTTTGCCGTTTGGTTGATCTATGGCAGACCCTTTTCCACAATTTTGCTGGATTTGATTCATTTTTGTGTTGCAGTCTAGTCTCATTATCTTGTGAGTTATTGAGGAGATTTTATGATGAGGATTTGTGGGTAGATCTTAGGCATGTGGATGGATGGCATTGTTTTCTTTTTATGCATACTTGACATTTTGCTTTTAAATCTGAATTATGATGTGATGAATCTCAAATATGAGATACTCATTCTTTTGTGTACTGACTTTCTTCACTTGCTCTTTTTTTTTCTTTTTTTTTTCTTCTTATTTCAATCTTGTCATTTGAACTAACACTAGTGTCTTGATGATCTATCTTGCTGCTGAATGGCTGTTATTATTAATCATGTGTATTTCTTTGGTTTAAATAATAGTCGTGGAAGATAAACTCAATGCTACTTAGATCCTAAGAAACGTGAAAATCAATGAGGGCATGGATTGTTAATATACTGATCCAGGTTTCTTGATATGACAAGGATGTCTTTATTATTTTCAATAGCATTCTGTCTGCCTTCTACAACAAGAAGTTTGGACTTTATATTGTTGATGTTTGAATCTTATACACAATACAATCAAAGGGATGGGAAGTTGAAGTATAAAACTCATATGATAAGCTAAATGAGCCACTTGCACATTTGTTAACACACATTATATAGGATAGTCTTATAGTTTTTTATTTTATTTTATTATTTATTTTTTTATATCCATGACTGCCCGATCCAGCTTTCGCGCACCTCGACTAATGTCACAAGACCTACCATCTGACCCTACAACATTTGGACGTCAAGAAAACCTGTAGGAAATTAATTTCTAGTTAGGTGGTCATCATGGATTGAACCCATCACTTTTAGCACTCCAAGGCTCTCTTTGACCACTAGGTCATTCCATGATGGTTGATAGTCTTATAGTTTTATGATAAGGTGAAAGCGTTTCTCAATAGTTCACTATCTTACTAGCAAAGAAAATTAAGAATAAAATATTTCATACAAAGCAAGTCCCATATTTCTATTCAAAATCCATTAAATTCTTCCCCGGGATTTGGATGACAAGATAGATCTAAAGATTTGACGCCTTACTTCGTCGGGATACATCGTCGTCTCGTCATACCTTGTGCCACATTGATCTCTTCCAATCTCAGGTTTCTTCTTCCTCTGGCTTTAACAGATGGAAACAGTTCTCTTCATAAAAGCATCATTTTTTTATCCACGAGCAAAATACATCGACATTTTTTGGCTACATTAACATCGACATACAAGCTCAACCAACTCTCCTCTAGTTTCTATGCATTTCATGCTATCGGATTTGTATTTATCGATTTACCTATGTATTTTTCTGTGATTGATCTTTATCGTTATTTCGATAGGTTTCTATGTAATACTTTCACTTTATCAATGAATATGTATTCATTTCTTATAAATGTATGTGACAGTATAACACTCAATTTTATGTTTCAAACTAAATGAGTATGGTGAAATAAATTATATATTCAAATTTTACAGTTGTAAAGGACTTGAAGTATGCCACCTCTCATGAATGGGTGAAAGTAGAAGGAGATAAAGCAACTGTTGGCATAACTGATCATGCTCAAGATCATTTAGGTGATGTTGTCTATGTTGAATTACCAGAAGTTGGAGCATCTGCTAAACAGGATGGCAGCTTTGGAGCTGTAGAAAGTGTTAAAGCTACCAGTGATATTAACTCTCCCGTGTCAGGGAAAATCATTGAGGTCAATGAAGAGCTCAGCAGTTCCCCTGGTCTGGTGGGTTCCTTAATTTAATATTCTTGCTCTTTTAATACTTATCTTCTTCCACTTCCTACTTTCGGATACTTAAAAGATGGTTTCTATTTAACAAAGCACTTAGAGTCTCAATTTCATTAATTGAGCCATCATCGGAAAATATTTCTAAGAGGTAATGAGTTCAATTCACAGTGACCACCTATCTAGGAATTAATTTCTTACGGGGTTCCTTAACAACTAAATGTTGTAAGTAGGGTGAGACAGTTAGTCTCGTGAGAATAATCTAAATTCTTAGTATCAAAGCTTCTTAGTATCATGAAAATGATGCCAATGGATTTTGCATATTCTAAATTCTTTGGTTTATTCAGCCTTCTTTCACTAGATGCAAGGAGATTGATAGGGTTTATATTAGCAGTATACTTTGTGAGTTTGTTAGGGTATCATGTTATAAATAAAGGTAGTGGGTAAGGGTAGAGGTAGAGGAGGGTCCAAGTACCTTAAATGTGCTGTATCTTGCAGATATCGTAATAGAGCTCTGTCTTTAGATGTCTACACAACATTTACTGCTTCTTTGCCTCTATTGAGAACATTATAATCATCCCTTGCACTGAAAACTTTCTATTCAAATCCAATGGGATAGCCTGTTTGTTATTTCAACTGATTTTTTTGTCATTGAATCAAAGCTTAGTTAGAAAAATCATTACATTGTTTTCTTTCTAGTTTCTCCAAAGCATGGTTAATCCAACTGTGTGGATAATGCAGGTGAATTCAAGTCCATATGAAAATGGATGGATAATTAAGGTGGAGGTTAGTGACAGTGGTGAACTGAAAAACTTGATGGATTCTGAGCAGTACACCAAGTTCTGTGAAGAAGAAGATTCAAAGCACTGATAGTTGATAGAAATGTTTGATAAGTTGCTTCTCTTGGAGACTCCACATTTCTTCTTCCTTTTCCTTTTCTTTTTCTTCTGTTTTCTGGAATTTAGTTCCTTCCTTTGTAGTAAGACTCACATAATTGGTTGAAACTTTCCCACTCAGATGAATAATTTGGTCGTTATGTTGTGAAGAAGCCTATTCATTGCACTTTCTATATTTTTCTTTACC

mRNA sequence

GCATCTCCATCAACCCTACTAGTAACTCACTTTCCATAGCAAATAAAAGTCTCTTTCATCAAACTGTTTCTCACAAAGCGACGCCAATCCCAATAACCATTAGCGTCTGTTCAGAGCTCTCCAAGTTTCATCAATGGCGGCGAGCTTCATTTGGGCTTCAAGAGCTGCTTCATTCCTCAAGATCTCAATCCCCCACAGAGGTTTCGCTTCTGTTGTAAAGGACTTGAAGTATGCCACCTCTCATGAATGGGTGAAAGTAGAAGGAGATAAAGCAACTGTTGGCATAACTGATCATGCTCAAGATCATTTAGGTGATGTTGTCTATGTTGAATTACCAGAAGTTGGAGCATCTGCTAAACAGGATGGCAGCTTTGGAGCTGTAGAAAGTGTTAAAGCTACCAGTGATATTAACTCTCCCGTGTCAGGGAAAATCATTGAGGTCAATGAAGAGCTCAGCAGTTCCCCTGGTCTGGTGAATTCAAGTCCATATGAAAATGGATGGATAATTAAGGTGGAGGTTAGTGACAGTGGTGAACTGAAAAACTTGATGGATTCTGAGCAGTACACCAAGTTCTGTGAAGAAGAAGATTCAAAGCACTGATAGTTGATAGAAATGTTTGATAAGTTGCTTCTCTTGGAGACTCCACATTTCTTCTTCCTTTTCCTTTTCTTTTTCTTCTGTTTTCTGGAATTTAGTTCCTTCCTTTGTAGTAAGACTCACATAATTGGTTGAAACTTTCCCACTCAGATGAATAATTTGGTCGTTATGTTGTGAAGAAGCCTATTCATTGCACTTTCTATATTTTTCTTTACC

Coding sequence (CDS)

ATGGCGGCGAGCTTCATTTGGGCTTCAAGAGCTGCTTCATTCCTCAAGATCTCAATCCCCCACAGAGGTTTCGCTTCTGTTGTAAAGGACTTGAAGTATGCCACCTCTCATGAATGGGTGAAAGTAGAAGGAGATAAAGCAACTGTTGGCATAACTGATCATGCTCAAGATCATTTAGGTGATGTTGTCTATGTTGAATTACCAGAAGTTGGAGCATCTGCTAAACAGGATGGCAGCTTTGGAGCTGTAGAAAGTGTTAAAGCTACCAGTGATATTAACTCTCCCGTGTCAGGGAAAATCATTGAGGTCAATGAAGAGCTCAGCAGTTCCCCTGGTCTGGTGAATTCAAGTCCATATGAAAATGGATGGATAATTAAGGTGGAGGTTAGTGACAGTGGTGAACTGAAAAACTTGATGGATTCTGAGCAGTACACCAAGTTCTGTGAAGAAGAAGATTCAAAGCACTGA

Protein sequence

MAASFIWASRAASFLKISIPHRGFASVVKDLKYATSHEWVKVEGDKATVGITDHAQDHLGDVVYVELPEVGASAKQDGSFGAVESVKATSDINSPVSGKIIEVNEELSSSPGLVNSSPYENGWIIKVEVSDSGELKNLMDSEQYTKFCEEEDSKH
Homology
[Close]
BLAST of Sed0027095 vs. NCBI nr
Match: XP_038893845.1 (glycine cleavage system H protein 2, mitochondrial [Benincasa hispida])

HSP 1 Score: 290.8 bits (743), Expect = 6.9e-75
Identity = 145/155 (93.55%), Postives = 151/155 (97.42%), Query Frame = 0 

Query: 1   MAASFIWASRAASFLKISIPHRGFASVVKDLKYATSHEWVKVEGDKATVGITDHAQDHLG 60
           MA+  +WASRAAS+L+ISIP+RGFASVVKDLKYATSHEWVKVEGDKATVGITDHAQDHLG
Sbjct: 1   MASRLVWASRAASYLRISIPYRGFASVVKDLKYATSHEWVKVEGDKATVGITDHAQDHLG 60

Query: 61  DVVYVELPEVGASAKQDGSFGAVESVKATSDINSPVSGKIIEVNEELSSSPGLVNSSPYE 120
           DVVYVELPEVG S KQDGSFGAVESVKATSDINSPVSGKIIEVNEELSSSPGLVNSSPYE
Sbjct: 61  DVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIIEVNEELSSSPGLVNSSPYE 120

Query: 121 NGWIIKVEVSDSGELKNLMDSEQYTKFCEEEDSKH 156
           NGWIIKVEVSDSGELKNLMDSEQY+KFCEEEDSKH
Sbjct: 121 NGWIIKVEVSDSGELKNLMDSEQYSKFCEEEDSKH 155

[Close]
BLAST of Sed0027095 vs. NCBI nr
Match: XP_008459025.1 (PREDICTED: glycine cleavage system H protein 2, mitochondrial [Cucumis melo] >KAA0043183.1 glycine cleavage system H protein 2 [Cucumis melo var. makuwa] >TYK12282.1 glycine cleavage system H protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 289.7 bits (740), Expect = 1.5e-74
Identity = 145/155 (93.55%), Postives = 150/155 (96.77%), Query Frame = 0 

Query: 1   MAASFIWASRAASFLKISIPHRGFASVVKDLKYATSHEWVKVEGDKATVGITDHAQDHLG 60
           MA+  +WASRAAS+L+ISIP RGFASVVKDLKYATSHEWVKVEGDKATVGITDHAQDHLG
Sbjct: 1   MASRLVWASRAASYLRISIPFRGFASVVKDLKYATSHEWVKVEGDKATVGITDHAQDHLG 60

Query: 61  DVVYVELPEVGASAKQDGSFGAVESVKATSDINSPVSGKIIEVNEELSSSPGLVNSSPYE 120
           DVVYVELPEVG S KQDGSFGAVESVKATSDINSPVSGKIIEVNEELSSSPGLVNSSPYE
Sbjct: 61  DVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIIEVNEELSSSPGLVNSSPYE 120

Query: 121 NGWIIKVEVSDSGELKNLMDSEQYTKFCEEEDSKH 156
           NGWIIKVEVSDSGELKNLMDSEQY+KFCEEEDSKH
Sbjct: 121 NGWIIKVEVSDSGELKNLMDSEQYSKFCEEEDSKH 155

[Close]
BLAST of Sed0027095 vs. NCBI nr
Match: XP_022927059.1 (glycine cleavage system H protein 2, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 288.5 bits (737), Expect = 3.4e-74
Identity = 142/155 (91.61%), Postives = 151/155 (97.42%), Query Frame = 0 

Query: 1   MAASFIWASRAASFLKISIPHRGFASVVKDLKYATSHEWVKVEGDKATVGITDHAQDHLG 60
           MA+  +WASRAASFL+ISIP+RGFASVVKDLKYATSHEWVKVEGDKAT+GITDHAQDHLG
Sbjct: 1   MASRLLWASRAASFLRISIPYRGFASVVKDLKYATSHEWVKVEGDKATIGITDHAQDHLG 60

Query: 61  DVVYVELPEVGASAKQDGSFGAVESVKATSDINSPVSGKIIEVNEELSSSPGLVNSSPYE 120
           DVVYVELPE+GAS KQDGSFGAVESVKATSDINSPVSGKI+EVN+ELSSSPGLVNSSPYE
Sbjct: 61  DVVYVELPEIGASVKQDGSFGAVESVKATSDINSPVSGKIVEVNDELSSSPGLVNSSPYE 120

Query: 121 NGWIIKVEVSDSGELKNLMDSEQYTKFCEEEDSKH 156
           NGWIIKVEVSDS ELKNLMDSEQY+KFCEEEDSKH
Sbjct: 121 NGWIIKVEVSDSNELKNLMDSEQYSKFCEEEDSKH 155

[Close]
BLAST of Sed0027095 vs. NCBI nr
Match: XP_023520355.1 (glycine cleavage system H protein 2, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 287.0 bits (733), Expect = 1.0e-73
Identity = 142/155 (91.61%), Postives = 150/155 (96.77%), Query Frame = 0 

Query: 1   MAASFIWASRAASFLKISIPHRGFASVVKDLKYATSHEWVKVEGDKATVGITDHAQDHLG 60
           MA+  +WASRAASFL+IS P+RGFASVVKDLKYATSHEWVKVEGDKAT+GITDHAQDHLG
Sbjct: 1   MASRLLWASRAASFLRISTPYRGFASVVKDLKYATSHEWVKVEGDKATIGITDHAQDHLG 60

Query: 61  DVVYVELPEVGASAKQDGSFGAVESVKATSDINSPVSGKIIEVNEELSSSPGLVNSSPYE 120
           DVVYVELPEVGAS KQDGSFGAVESVKATSDINSPVSGKI+EVN+ELSSSPGLVNSSPYE
Sbjct: 61  DVVYVELPEVGASVKQDGSFGAVESVKATSDINSPVSGKIVEVNDELSSSPGLVNSSPYE 120

Query: 121 NGWIIKVEVSDSGELKNLMDSEQYTKFCEEEDSKH 156
           NGWIIKVEVSDS ELKNLMDSEQY+KFCEEEDSKH
Sbjct: 121 NGWIIKVEVSDSNELKNLMDSEQYSKFCEEEDSKH 155

[Close]
BLAST of Sed0027095 vs. NCBI nr
Match: XP_004145438.1 (glycine cleavage system H protein 2, mitochondrial [Cucumis sativus] >KGN66866.1 hypothetical protein Csa_007471 [Cucumis sativus])

HSP 1 Score: 284.6 bits (727), Expect = 4.9e-73
Identity = 143/155 (92.26%), Postives = 148/155 (95.48%), Query Frame = 0 

Query: 1   MAASFIWASRAASFLKISIPHRGFASVVKDLKYATSHEWVKVEGDKATVGITDHAQDHLG 60
           MA+  +WASRAAS+L+ISIP RGFASVVKDLKYATSHEWVKVEGDKATVGITDHAQ HLG
Sbjct: 1   MASRLVWASRAASYLRISIPFRGFASVVKDLKYATSHEWVKVEGDKATVGITDHAQGHLG 60

Query: 61  DVVYVELPEVGASAKQDGSFGAVESVKATSDINSPVSGKIIEVNEELSSSPGLVNSSPYE 120
           DVVYVELPEVG S KQDGSFGAVESVKATSDINSPVSGKIIEVNEELSSSPGLVNSSPYE
Sbjct: 61  DVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIIEVNEELSSSPGLVNSSPYE 120

Query: 121 NGWIIKVEVSDSGELKNLMDSEQYTKFCEEEDSKH 156
           NGWIIKVEVSDSGELK LMDSEQY+KFCEEEDSKH
Sbjct: 121 NGWIIKVEVSDSGELKKLMDSEQYSKFCEEEDSKH 155

[Close]
BLAST of Sed0027095 vs. ExPASy Swiss-Prot
Match: O82179 (Glycine cleavage system H protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=GDH2 PE=2 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 8.2e-63
Identity = 119/156 (76.28%), Postives = 136/156 (87.18%), Query Frame = 0 

Query: 1   MAASFIWASRAASFLKISIPHRGFASVV-KDLKYATSHEWVKVEGDKATVGITDHAQDHL 60
           MA    WASR AS L+IS+  RGF+SVV KDLKYA SHEWVK++G+KAT GITDHAQDHL
Sbjct: 1   MACRLFWASRVASHLRISVAQRGFSSVVLKDLKYADSHEWVKIDGNKATFGITDHAQDHL 60

Query: 61  GDVVYVELPEVGASAKQDGSFGAVESVKATSDINSPVSGKIIEVNEELSSSPGLVNSSPY 120
           GDVVYVELP+VG S  Q  SFGAVESVKATSDINSPVSGK++EVNEEL+ SPGLVNSSPY
Sbjct: 61  GDVVYVELPDVGHSVSQGKSFGAVESVKATSDINSPVSGKVVEVNEELTESPGLVNSSPY 120

Query: 121 ENGWIIKVEVSDSGELKNLMDSEQYTKFCEEEDSKH 156
           E GWIIKVE+SD+GE + LMDS++Y+KFCEEED+KH
Sbjct: 121 EQGWIIKVELSDAGEAEKLMDSDKYSKFCEEEDAKH 156

[Close]
BLAST of Sed0027095 vs. ExPASy Swiss-Prot
Match: P49359 (Glycine cleavage system H protein, mitochondrial OS=Flaveria pringlei OX=4226 GN=GDCSH PE=2 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.4e-49
Identity = 99/158 (62.66%), Postives = 124/158 (78.48%), Query Frame = 0 

Query: 6   IWASRAASFLKISI---PH-----RGFASVVKDLKYATSHEWVKVEGDKATVGITDHAQD 65
           IWAS  A+ L++S    PH     R F+SV+  LKYA SHEWVK EG  AT+GITDHAQD
Sbjct: 5   IWASSTANALRLSSATRPHFSPLSRCFSSVLDGLKYANSHEWVKHEGSVATIGITDHAQD 64

Query: 66  HLGDVVYVELPEVGASAKQDGSFGAVESVKATSDINSPVSGKIIEVNEELSSSPGLVNSS 125
           HLG+VV+V+LPE G S  +   FGAVESVKATSD+NSP+SG+I+EVN +LS +PGL+NSS
Sbjct: 65  HLGEVVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSETPGLINSS 124

Query: 126 PYENGWIIKVEVSDSGELKNLMDSEQYTKFCEEEDSKH 156
           PYE+GW+IKV+ S+  EL +LM +++YTKFCEEEDS H
Sbjct: 125 PYEDGWMIKVKPSNPSELDSLMGAKEYTKFCEEEDSAH 162

[Close]
BLAST of Sed0027095 vs. ExPASy Swiss-Prot
Match: Q39732 (Glycine cleavage system H protein, mitochondrial OS=Flaveria anomala OX=35877 GN=GDCSH PE=2 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 6.8e-49
Identity = 97/158 (61.39%), Postives = 124/158 (78.48%), Query Frame = 0 

Query: 6   IWASRAASFLKISI---PH-----RGFASVVKDLKYATSHEWVKVEGDKATVGITDHAQD 65
           +WAS  A+ L++S    PH     R F+SV+  LKYA SHEWVK EG  AT+GITDHAQD
Sbjct: 5   MWASSTANALRLSSATRPHFSPLSRCFSSVLDGLKYANSHEWVKHEGSVATIGITDHAQD 64

Query: 66  HLGDVVYVELPEVGASAKQDGSFGAVESVKATSDINSPVSGKIIEVNEELSSSPGLVNSS 125
           HLG+VV+V+LPE G S  +   FGAVESVKATSD+NSP+SG+I+EVN +LS +PGL+NSS
Sbjct: 65  HLGEVVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSETPGLINSS 124

Query: 126 PYENGWIIKVEVSDSGELKNLMDSEQYTKFCEEEDSKH 156
           PYE+GW+IKV+ S+  EL +LM +++YTKFCEEED+ H
Sbjct: 125 PYEDGWMIKVKPSNPSELDSLMGAKEYTKFCEEEDAAH 162

[Close]
BLAST of Sed0027095 vs. ExPASy Swiss-Prot
Match: Q9LQL0 (Glycine cleavage system H protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=GDH3 PE=1 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 2.8e-47
Identity = 97/162 (59.88%), Postives = 124/162 (76.54%), Query Frame = 0 

Query: 6   IWASRAASFLKIS--------IP----HRGFASVVKDLKYATSHEWVKVEGDKATVGITD 65
           +WAS  A+ LK+S        +P     R F+SV++ LKYA SHEWVK EG  AT+GITD
Sbjct: 5   MWASSTANALKLSSSASKSHLLPAFSISRCFSSVLEGLKYANSHEWVKHEGSVATIGITD 64

Query: 66  HAQDHLGDVVYVELPEVGASAKQDGSFGAVESVKATSDINSPVSGKIIEVNEELSSSPGL 125
           HAQDHLG+VV+VELPE  +S  ++ SFGAVESVKATS+I SP+SG++IEVN +L+ SPGL
Sbjct: 65  HAQDHLGEVVFVELPEANSSVSKEKSFGAVESVKATSEILSPISGEVIEVNTKLTESPGL 124

Query: 126 VNSSPYENGWIIKVEVSDSGELKNLMDSEQYTKFCEEEDSKH 156
           +NSSPYE+GW+IKV+ S   EL+ LM  ++YTKFCEEED+ H
Sbjct: 125 INSSPYEDGWMIKVKPSSPAELEALMGPKEYTKFCEEEDAAH 166

[Close]
BLAST of Sed0027095 vs. ExPASy Swiss-Prot
Match: A2Z9B8 (Glycine cleavage system H protein, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=GDCSH PE=2 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 6.3e-47
Identity = 94/159 (59.12%), Postives = 120/159 (75.47%), Query Frame = 0 

Query: 6   IWASRAASFLKISIP-----------HRGFASVVKDLKYATSHEWVKVEGDKATVGITDH 65
           +WAS AA+ LKIS              R F++V+  LKY++SHEWVK +G  AT+GITDH
Sbjct: 5   LWASSAANALKISCSGATRAAPAYSISRYFSTVLDGLKYSSSHEWVKNDGSVATIGITDH 64

Query: 66  AQDHLGDVVYVELPEVGASAKQDGSFGAVESVKATSDINSPVSGKIIEVNEELSSSPGLV 125
           AQ HLG+VV+VELPE GA   Q G+FG VESVKATSDINSP+SG+++EVN++LS +PGL+
Sbjct: 65  AQGHLGEVVFVELPEAGAKVSQGGAFGNVESVKATSDINSPISGEVVEVNDKLSETPGLI 124

Query: 126 NSSPYENGWIIKVEVSDSGELKNLMDSEQYTKFCEEEDS 154
           NSSPYE+GW+IKV+ S   EL  L+D  +YTK CEEED+
Sbjct: 125 NSSPYEDGWMIKVKPSSPSELDALLDPAKYTKHCEEEDA 163

[Close]
BLAST of Sed0027095 vs. ExPASy TrEMBL
Match: A0A5D3CLV3 (Glycine cleavage system H protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00460 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 7.4e-75
Identity = 145/155 (93.55%), Postives = 150/155 (96.77%), Query Frame = 0 

Query: 1   MAASFIWASRAASFLKISIPHRGFASVVKDLKYATSHEWVKVEGDKATVGITDHAQDHLG 60
           MA+  +WASRAAS+L+ISIP RGFASVVKDLKYATSHEWVKVEGDKATVGITDHAQDHLG
Sbjct: 1   MASRLVWASRAASYLRISIPFRGFASVVKDLKYATSHEWVKVEGDKATVGITDHAQDHLG 60

Query: 61  DVVYVELPEVGASAKQDGSFGAVESVKATSDINSPVSGKIIEVNEELSSSPGLVNSSPYE 120
           DVVYVELPEVG S KQDGSFGAVESVKATSDINSPVSGKIIEVNEELSSSPGLVNSSPYE
Sbjct: 61  DVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIIEVNEELSSSPGLVNSSPYE 120

Query: 121 NGWIIKVEVSDSGELKNLMDSEQYTKFCEEEDSKH 156
           NGWIIKVEVSDSGELKNLMDSEQY+KFCEEEDSKH
Sbjct: 121 NGWIIKVEVSDSGELKNLMDSEQYSKFCEEEDSKH 155

[Close]
BLAST of Sed0027095 vs. ExPASy TrEMBL
Match: A0A1S3C983 (Glycine cleavage system H protein OS=Cucumis melo OX=3656 GN=LOC103498256 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 7.4e-75
Identity = 145/155 (93.55%), Postives = 150/155 (96.77%), Query Frame = 0 

Query: 1   MAASFIWASRAASFLKISIPHRGFASVVKDLKYATSHEWVKVEGDKATVGITDHAQDHLG 60
           MA+  +WASRAAS+L+ISIP RGFASVVKDLKYATSHEWVKVEGDKATVGITDHAQDHLG
Sbjct: 1   MASRLVWASRAASYLRISIPFRGFASVVKDLKYATSHEWVKVEGDKATVGITDHAQDHLG 60

Query: 61  DVVYVELPEVGASAKQDGSFGAVESVKATSDINSPVSGKIIEVNEELSSSPGLVNSSPYE 120
           DVVYVELPEVG S KQDGSFGAVESVKATSDINSPVSGKIIEVNEELSSSPGLVNSSPYE
Sbjct: 61  DVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIIEVNEELSSSPGLVNSSPYE 120

Query: 121 NGWIIKVEVSDSGELKNLMDSEQYTKFCEEEDSKH 156
           NGWIIKVEVSDSGELKNLMDSEQY+KFCEEEDSKH
Sbjct: 121 NGWIIKVEVSDSGELKNLMDSEQYSKFCEEEDSKH 155

[Close]
BLAST of Sed0027095 vs. ExPASy TrEMBL
Match: A0A6J1EGY1 (Glycine cleavage system H protein OS=Cucurbita moschata OX=3662 GN=LOC111433999 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.7e-74
Identity = 142/155 (91.61%), Postives = 151/155 (97.42%), Query Frame = 0 

Query: 1   MAASFIWASRAASFLKISIPHRGFASVVKDLKYATSHEWVKVEGDKATVGITDHAQDHLG 60
           MA+  +WASRAASFL+ISIP+RGFASVVKDLKYATSHEWVKVEGDKAT+GITDHAQDHLG
Sbjct: 1   MASRLLWASRAASFLRISIPYRGFASVVKDLKYATSHEWVKVEGDKATIGITDHAQDHLG 60

Query: 61  DVVYVELPEVGASAKQDGSFGAVESVKATSDINSPVSGKIIEVNEELSSSPGLVNSSPYE 120
           DVVYVELPE+GAS KQDGSFGAVESVKATSDINSPVSGKI+EVN+ELSSSPGLVNSSPYE
Sbjct: 61  DVVYVELPEIGASVKQDGSFGAVESVKATSDINSPVSGKIVEVNDELSSSPGLVNSSPYE 120

Query: 121 NGWIIKVEVSDSGELKNLMDSEQYTKFCEEEDSKH 156
           NGWIIKVEVSDS ELKNLMDSEQY+KFCEEEDSKH
Sbjct: 121 NGWIIKVEVSDSNELKNLMDSEQYSKFCEEEDSKH 155

[Close]
BLAST of Sed0027095 vs. ExPASy TrEMBL
Match: A0A6J1KN94 (Glycine cleavage system H protein OS=Cucurbita maxima OX=3661 GN=LOC111495697 PE=3 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.4e-73
Identity = 140/155 (90.32%), Postives = 148/155 (95.48%), Query Frame = 0 

Query: 1   MAASFIWASRAASFLKISIPHRGFASVVKDLKYATSHEWVKVEGDKATVGITDHAQDHLG 60
           MA+  +WASR AS+L+ISIPHRGFASVVKDLKYATSHEWVKVEGDKAT+GITDHAQDHLG
Sbjct: 1   MASRLVWASRVASYLRISIPHRGFASVVKDLKYATSHEWVKVEGDKATIGITDHAQDHLG 60

Query: 61  DVVYVELPEVGASAKQDGSFGAVESVKATSDINSPVSGKIIEVNEELSSSPGLVNSSPYE 120
           DVVYVELPEVG S KQDGSFGAVESVKATSDINSPVSGKI+EVN+ELSSSP LVNSSPYE
Sbjct: 61  DVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIVEVNDELSSSPALVNSSPYE 120

Query: 121 NGWIIKVEVSDSGELKNLMDSEQYTKFCEEEDSKH 156
           NGWIIKVEVSDS ELKNLMDSEQY+KFCEEEDSKH
Sbjct: 121 NGWIIKVEVSDSDELKNLMDSEQYSKFCEEEDSKH 155

[Close]
BLAST of Sed0027095 vs. ExPASy TrEMBL
Match: A0A0A0M3S2 (Glycine cleavage system H protein OS=Cucumis sativus OX=3659 GN=Csa_1G701910 PE=3 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.4e-73
Identity = 143/155 (92.26%), Postives = 148/155 (95.48%), Query Frame = 0 

Query: 1   MAASFIWASRAASFLKISIPHRGFASVVKDLKYATSHEWVKVEGDKATVGITDHAQDHLG 60
           MA+  +WASRAAS+L+ISIP RGFASVVKDLKYATSHEWVKVEGDKATVGITDHAQ HLG
Sbjct: 1   MASRLVWASRAASYLRISIPFRGFASVVKDLKYATSHEWVKVEGDKATVGITDHAQGHLG 60

Query: 61  DVVYVELPEVGASAKQDGSFGAVESVKATSDINSPVSGKIIEVNEELSSSPGLVNSSPYE 120
           DVVYVELPEVG S KQDGSFGAVESVKATSDINSPVSGKIIEVNEELSSSPGLVNSSPYE
Sbjct: 61  DVVYVELPEVGTSVKQDGSFGAVESVKATSDINSPVSGKIIEVNEELSSSPGLVNSSPYE 120

Query: 121 NGWIIKVEVSDSGELKNLMDSEQYTKFCEEEDSKH 156
           NGWIIKVEVSDSGELK LMDSEQY+KFCEEEDSKH
Sbjct: 121 NGWIIKVEVSDSGELKKLMDSEQYSKFCEEEDSKH 155

[Close]
BLAST of Sed0027095 vs. TAIR 10
Match: AT2G35120.1 (Single hybrid motif superfamily protein )

HSP 1 Score: 241.1 bits (614), Expect = 5.8e-64
Identity = 119/156 (76.28%), Postives = 136/156 (87.18%), Query Frame = 0 

Query: 1   MAASFIWASRAASFLKISIPHRGFASVV-KDLKYATSHEWVKVEGDKATVGITDHAQDHL 60
           MA    WASR AS L+IS+  RGF+SVV KDLKYA SHEWVK++G+KAT GITDHAQDHL
Sbjct: 1   MACRLFWASRVASHLRISVAQRGFSSVVLKDLKYADSHEWVKIDGNKATFGITDHAQDHL 60

Query: 61  GDVVYVELPEVGASAKQDGSFGAVESVKATSDINSPVSGKIIEVNEELSSSPGLVNSSPY 120
           GDVVYVELP+VG S  Q  SFGAVESVKATSDINSPVSGK++EVNEEL+ SPGLVNSSPY
Sbjct: 61  GDVVYVELPDVGHSVSQGKSFGAVESVKATSDINSPVSGKVVEVNEELTESPGLVNSSPY 120

Query: 121 ENGWIIKVEVSDSGELKNLMDSEQYTKFCEEEDSKH 156
           E GWIIKVE+SD+GE + LMDS++Y+KFCEEED+KH
Sbjct: 121 EQGWIIKVELSDAGEAEKLMDSDKYSKFCEEEDAKH 156

[Close]
BLAST of Sed0027095 vs. TAIR 10
Match: AT1G32470.1 (Single hybrid motif superfamily protein )

HSP 1 Score: 189.5 bits (480), Expect = 2.0e-48
Identity = 97/162 (59.88%), Postives = 124/162 (76.54%), Query Frame = 0 

Query: 6   IWASRAASFLKIS--------IP----HRGFASVVKDLKYATSHEWVKVEGDKATVGITD 65
           +WAS  A+ LK+S        +P     R F+SV++ LKYA SHEWVK EG  AT+GITD
Sbjct: 5   MWASSTANALKLSSSASKSHLLPAFSISRCFSSVLEGLKYANSHEWVKHEGSVATIGITD 64

Query: 66  HAQDHLGDVVYVELPEVGASAKQDGSFGAVESVKATSDINSPVSGKIIEVNEELSSSPGL 125
           HAQDHLG+VV+VELPE  +S  ++ SFGAVESVKATS+I SP+SG++IEVN +L+ SPGL
Sbjct: 65  HAQDHLGEVVFVELPEANSSVSKEKSFGAVESVKATSEILSPISGEVIEVNTKLTESPGL 124

Query: 126 VNSSPYENGWIIKVEVSDSGELKNLMDSEQYTKFCEEEDSKH 156
           +NSSPYE+GW+IKV+ S   EL+ LM  ++YTKFCEEED+ H
Sbjct: 125 INSSPYEDGWMIKVKPSSPAELEALMGPKEYTKFCEEEDAAH 166

[Close]
BLAST of Sed0027095 vs. TAIR 10
Match: AT2G35370.1 (glycine decarboxylase complex H )

HSP 1 Score: 186.0 bits (471), Expect = 2.2e-47
Identity = 95/161 (59.01%), Postives = 122/161 (75.78%), Query Frame = 0 

Query: 6   IWASRAASFLKISIP-----------HRGFASVVKDLKYATSHEWVKVEGDKATVGITDH 65
           +WAS  A+ LK+S              R F++V++ LKYA SHEWVK EG  AT+GIT H
Sbjct: 5   MWASSTANALKLSSSVSKSHLSPFSFSRCFSTVLEGLKYANSHEWVKHEGSVATIGITAH 64

Query: 66  AQDHLGDVVYVELPEVGASAKQDGSFGAVESVKATSDINSPVSGKIIEVNEELSSSPGLV 125
           AQDHLG+VV+VELPE   S  ++ SFGAVESVKATS+I SP+SG+IIEVN++L+ SPGL+
Sbjct: 65  AQDHLGEVVFVELPEDNTSVSKEKSFGAVESVKATSEILSPISGEIIEVNKKLTESPGLI 124

Query: 126 NSSPYENGWIIKVEVSDSGELKNLMDSEQYTKFCEEEDSKH 156
           NSSPYE+GW+IKV+ S   EL++LM  ++YTKFCEEED+ H
Sbjct: 125 NSSPYEDGWMIKVKPSSPAELESLMGPKEYTKFCEEEDAAH 165

The following BLAST results are available for this feature:
BLAST of Sed0027095 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038893845.16.9e-7593.55glycine cleavage system H protein 2, mitochondrial [Benincasa hispida][more]
XP_008459025.11.5e-7493.55PREDICTED: glycine cleavage system H protein 2, mitochondrial [Cucumis melo] >KA... [more]
XP_022927059.13.4e-7491.61glycine cleavage system H protein 2, mitochondrial-like [Cucurbita moschata][more]
XP_023520355.11.0e-7391.61glycine cleavage system H protein 2, mitochondrial [Cucurbita pepo subsp. pepo][more]
XP_004145438.14.9e-7392.26glycine cleavage system H protein 2, mitochondrial [Cucumis sativus] >KGN66866.1... [more]
BLAST of Sed0027095 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O821798.2e-6376.28Glycine cleavage system H protein 2, mitochondrial OS=Arabidopsis thaliana OX=37... [more]
P493591.4e-4962.66Glycine cleavage system H protein, mitochondrial OS=Flaveria pringlei OX=4226 GN... [more]
Q397326.8e-4961.39Glycine cleavage system H protein, mitochondrial OS=Flaveria anomala OX=35877 GN... [more]
Q9LQL02.8e-4759.88Glycine cleavage system H protein 3, mitochondrial OS=Arabidopsis thaliana OX=37... [more]
A2Z9B86.3e-4759.12Glycine cleavage system H protein, mitochondrial OS=Oryza sativa subsp. indica O... [more]
BLAST of Sed0027095 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CLV37.4e-7593.55Glycine cleavage system H protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A1S3C9837.4e-7593.55Glycine cleavage system H protein OS=Cucumis melo OX=3656 GN=LOC103498256 PE=3 S... [more]
A0A6J1EGY11.7e-7491.61Glycine cleavage system H protein OS=Cucurbita moschata OX=3662 GN=LOC111433999 ... [more]
A0A6J1KN942.4e-7390.32Glycine cleavage system H protein OS=Cucurbita maxima OX=3661 GN=LOC111495697 PE... [more]
A0A0A0M3S22.4e-7392.26Glycine cleavage system H protein OS=Cucumis sativus OX=3659 GN=Csa_1G701910 PE=... [more]
BLAST of Sed0027095 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G35120.15.8e-6476.28Single hybrid motif superfamily protein [more]
AT1G32470.12.0e-4859.88Single hybrid motif superfamily protein [more]
AT2G35370.12.2e-4759.01glycine decarboxylase complex H [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.100coord: 20..151
e-value: 2.6E-58
score: 197.3
NoneNo IPR availablePANTHERPTHR11715:SF31GLYCINE CLEAVAGE SYSTEM H PROTEINcoord: 3..153
IPR017453Glycine cleavage system H-protein, subgroupTIGRFAMTIGR00527TIGR00527coord: 28..152
e-value: 1.2E-51
score: 172.1
IPR033753Glycine cleavage system H-protein/SimiatePFAMPF01597GCV_Hcoord: 31..150
e-value: 6.8E-49
score: 164.8
IPR033753Glycine cleavage system H-protein/SimiateCDDcd06848GCS_Hcoord: 33..127
e-value: 7.7396E-50
score: 153.073
IPR002930Glycine cleavage system H-proteinPANTHERPTHR11715GLYCINE CLEAVAGE SYSTEM H PROTEINcoord: 3..153
IPR002930Glycine cleavage system H-proteinHAMAPMF_00272GcvHcoord: 28..149
score: 39.204292
IPR000089Biotin/lipoyl attachmentPROSITEPS50968BIOTINYL_LIPOYLcoord: 46..128
score: 28.784136
IPR011053Single hybrid motifSUPERFAMILY51230Single hybrid motifcoord: 27..150

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0027095.1Sed0027095.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019464 glycine decarboxylation via glycine cleavage system
biological_process GO:0009249 protein lipoylation
cellular_component GO:0005960 glycine cleavage complex
cellular_component GO:0005739 mitochondrion