Sed0027085 (gene) Chayote v1

Overview


Name	Sed0027085
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RING-type E3 ubiquitin transferase
Location	LG09: 40020940 .. 40021360 (+)
RNA-Seq Expression	Sed0027085
Synteny	Sed0027085

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAGGATGGAGTAATTGCTGTTGTCGTTCGCCCGGGACGACCGAGCCTGTAAAGAACTTTAAACATGAAGACTCAAATGTCATACAGATCTCAACTATCATGTACACGTACAAGAAAGAAAATGAGACTGAAGAAACTAATACTGAAACTGAGCGTGTTTTGTGCTTGTCACCTTTTGAGGATGGGGAATGTATACGGCAGCTTCCCGGTTGCAACCATGTCTTTCATGCATCGTGTATCGACGTATGGCTGTCTTCACCGTTAGATTGCCTGCTCTGTCGGAGTCTAGTCGATCGTGTAGCTTGTATTAATGGGGAGTCGGAATAATTCTCAGGTAGTAGTTGTTAATAACAATCTCCGGATTGCGCTTTCTGCTTGTGTAAGTAGAAGAGAGGTGGAGCCAGAAAACATGGTTTGA

mRNA sequence

ATGCTAGGATGGAGTAATTGCTGTTGTCGTTCGCCCGGGACGACCGAGCCTGTAAAGAACTTTAAACATGAAGACTCAAATGTCATACAGATCTCAACTATCATGTACACGTACAAGAAAGAAAATGAGACTGAAGAAACTAATACTGAAACTGAGCGTGTTTTGTGCTTGTCACCTTTTGAGGATGGGGAATGTATACGGCAGCTTCCCGGTTGCAACCATGTCTTTCATGCATCGTGTATCGACGTATGGCTGTCTTCACCGTTAGATTGCCTGCTCTGTCGGAGTCTAGTCGATCGTGTAGCTTTAGTTGTTAATAACAATCTCCGGATTGCGCTTTCTGCTTGTGTAAGTAGAAGAGAGGTGGAGCCAGAAAACATGGTTTGA

Coding sequence (CDS)

ATGCTAGGATGGAGTAATTGCTGTTGTCGTTCGCCCGGGACGACCGAGCCTGTAAAGAACTTTAAACATGAAGACTCAAATGTCATACAGATCTCAACTATCATGTACACGTACAAGAAAGAAAATGAGACTGAAGAAACTAATACTGAAACTGAGCGTGTTTTGTGCTTGTCACCTTTTGAGGATGGGGAATGTATACGGCAGCTTCCCGGTTGCAACCATGTCTTTCATGCATCGTGTATCGACGTATGGCTGTCTTCACCGTTAGATTGCCTGCTCTGTCGGAGTCTAGTCGATCGTGTAGCTTTAGTTGTTAATAACAATCTCCGGATTGCGCTTTCTGCTTGTGTAAGTAGAAGAGAGGTGGAGCCAGAAAACATGGTTTGA

Protein sequence

MLGWSNCCCRSPGTTEPVKNFKHEDSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLVDRVALVVNNNLRIALSACVSRREVEPENMV

Homology

[Close]

BLAST of Sed0027085 vs. NCBI nr
Match: KAG7013994.1 (E3 ubiquitin-protein ligase ATL6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 167.5 bits (423), Expect = 7.3e-38
Identity = 87/138 (63.04%), Postives = 101/138 (73.19%), Query Frame = 0


Query: 1   MLGWSNCCCRSPGTTEPVKNFKHEDSNVIQISTIMYTYKKENETEETNTETERVLCLSPF 60
           +LGW NCCC SP TTE V+N K+E S+++QI T+  TYKKENE EETNTE+E VLCLSPF
Sbjct: 27  ILGWFNCCCHSPRTTESVENIKNEVSHIMQIPTV--TYKKENENEETNTESECVLCLSPF 86

Query: 61  EDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLVDRVA----------LVVNNNLR 120
           EDGECIRQLP CNHVFHASCIDVWLSS  +C LCR+ V  VA          +V  N+L+
Sbjct: 87  EDGECIRQLPSCNHVFHASCIDVWLSSHSECPLCRTPVHHVACRTAEAVICQVVDINSLQ 146

Query: 121 IALSACVSRREVEPENMV 129
           I LS  V R +  PENMV
Sbjct: 147 IELSPHVIRSKAWPENMV 162

[Close]

BLAST of Sed0027085 vs. NCBI nr
Match: KAA0059407.1 (E3 ubiquitin-protein ligase RING1-like [Cucumis melo var. makuwa] >TYK03920.1 E3 ubiquitin-protein ligase RING1-like [Cucumis melo var. makuwa])

HSP 1 Score: 158.3 bits (399), Expect = 4.4e-35
Identity = 85/143 (59.44%), Postives = 100/143 (69.93%), Query Frame = 0


Query: 1   MLGWSNCCCRSPGTTEPVKNFKHEDSNVIQISTIMYTYKKENETEETNTETERVLCLSPF 60
           MLGW NCCCRSP  T+ VKN K+EDSN+I+ISTIM  YKKEN++EETN  +E  LCLSP 
Sbjct: 94  MLGWFNCCCRSPEMTD-VKNIKYEDSNLIKISTIM--YKKENKSEETNIPSECALCLSPC 153

Query: 61  EDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLVDRVA---------------LVV 120
           EDGECIR+L  CNHVFHASCIDVWL S  +C LCR+ +D VA               +V+
Sbjct: 154 EDGECIRKLLACNHVFHASCIDVWLYSHSNCPLCRTTLDHVACNNGELTSGVVNSHVVVI 213

Query: 121 NNNLRIALSACVSRREVEPENMV 129
           NN+L+I LS   SRR    ENMV
Sbjct: 214 NNSLQIGLSLHESRRGSPSENMV 233

[Close]

BLAST of Sed0027085 vs. NCBI nr
Match: KAE8646506.1 (hypothetical protein Csa_015876 [Cucumis sativus])

HSP 1 Score: 156.8 bits (395), Expect = 1.3e-34
Identity = 80/139 (57.55%), Postives = 100/139 (71.94%), Query Frame = 0


Query: 1    MLGWSNCCCRSPGTTEPVKNFKHEDSNVIQISTIMYTYKKENETEETNTETERVLCLSPF 60
            +LGW NCCCRSP  T  VKN K+EDSN+++ISTIM  YKKEN++EETN  +E  LCLSP+
Sbjct: 941  ILGWFNCCCRSPEMTN-VKNIKYEDSNLMKISTIM--YKKENKSEETNITSECALCLSPY 1000

Query: 61   EDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLVDRVALV-----------VNNNL 120
            EDGECIR+L  CNHVFHASCID+WL S  +C LCR+ + RVA +           ++N+L
Sbjct: 1001 EDGECIRELLACNHVFHASCIDIWLYSHSNCPLCRTPLGRVACINGELTSGVVVAISNSL 1060

Query: 121  RIALSACVSRREVEPENMV 129
            +I  S   S+RE  PENMV
Sbjct: 1061 QIETSTHGSQREASPENMV 1076

[Close]

BLAST of Sed0027085 vs. NCBI nr
Match: KDP40714.1 (hypothetical protein JCGZ_24713 [Jatropha curcas])

HSP 1 Score: 86.3 bits (212), Expect = 2.1e-13
Identity = 42/90 (46.67%), Postives = 53/90 (58.89%), Query Frame = 0


Query: 12  PGTTEPVKNFKHEDSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLPG 71
           PG T P +       N+   S   + YKKE+E  E   ETE V+CLS FED E +R+L  
Sbjct: 38  PGLTSPAEPKDSVSLNLSSYSASTFKYKKESENPEAPPETECVVCLSTFEDEEYVRRLSD 97

Query: 72  CNHVFHASCIDVWLSSPLDCLLCRSLVDRV 102
           C H FHA CID+WL S  DC LCR+ + R+
Sbjct: 98  CRHSFHAPCIDMWLYSHSDCPLCRTPIHRL 127

[Close]

BLAST of Sed0027085 vs. NCBI nr
Match: EEF41012.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 85.1 bits (209), Expect = 4.8e-13
Identity = 44/103 (42.72%), Postives = 58/103 (56.31%), Query Frame = 0


Query: 1   MLGW--SNCCCRSPGTTEPVKNFKHEDSNVIQISTIMYTYKKENETEETNTETERVLCLS 60
           MLGW  S+        + P  +      N+   S   + YKK  E  E  +ETE ++CLS
Sbjct: 25  MLGWRTSHHQLSRQELSNPADHKSSVSLNLNPYSASTFKYKKRIENSEVPSETECIVCLS 84

Query: 61  PFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLVDRV 102
            FED E +RQLP C H FHASCID+W+ S  DC LCR+ + R+
Sbjct: 85  DFEDDEYVRQLPRCKHSFHASCIDMWVYSHSDCPLCRTPIHRL 127

[Close]

BLAST of Sed0027085 vs. ExPASy Swiss-Prot
Match: Q9LUZ9 (RING-H2 finger protein ATL63 OS=Arabidopsis thaliana OX=3702 GN=ATL63 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.9e-11
Identity = 48/112 (42.86%), Postives = 64/112 (57.14%), Query Frame = 0


Query: 11  SPGTTEPVKNFKHEDSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLP 70
           SP  T   ++ K  DS+V  IS+I     +ENE EE + E E V+CL  +E G+  R+L 
Sbjct: 100 SPAAT-ATRDDKGLDSSV--ISSIPLFVYEENE-EEEDEEEECVICLGLWEAGDFGRKLR 159

Query: 71  GCNHVFHASCIDVWLSSPLDCLLCRSLVDRVALVVNNNLRIALSACVSRREV 123
            C H FH  CID+WLSS   C LCRS V   A+    NL++A++A     EV
Sbjct: 160 NCGHGFHVECIDMWLSSHSTCPLCRSPV-LAAVSDEENLKLAVNAVEEEAEV 206

[Close]

BLAST of Sed0027085 vs. ExPASy Swiss-Prot
Match: Q9SJJ7 (RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 8.7e-10
Identity = 32/72 (44.44%), Postives = 45/72 (62.50%), Query Frame = 0


Query: 25  DSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVW 84
           DS  ++ S  +Y Y K    ++ N +   V+CLS FE+GE ++ +P C HVFH  C+D W
Sbjct: 117 DSQAVR-SLPVYRYTK--AAKQRNEDC--VICLSDFEEGETVKVIPHCGHVFHVDCVDTW 176

Query: 85  LSSPLDCLLCRS 97
           LSS + C LCRS
Sbjct: 177 LSSYVTCPLCRS 183

[Close]

BLAST of Sed0027085 vs. ExPASy Swiss-Prot
Match: Q9LSW9 (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-09
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 0


Query: 41  ENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLV 99
           E E EE     E  +CLS F+D E +R +P C+H+FH  CIDVWL +  +C LCR+ V
Sbjct: 126 EGEEEEEKRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRV 183

[Close]

BLAST of Sed0027085 vs. ExPASy Swiss-Prot
Match: Q8L9T5 (RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-09
Identity = 34/78 (43.59%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 25  DSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVW 84
           D NVI+ S  ++T+  E   +      E  +CLS FE+ E  R LP C H FH  CID+W
Sbjct: 96  DPNVIK-SLPVFTFSDETHKD----PIECAVCLSEFEESETGRVLPNCQHTFHVDCIDMW 155

Query: 85  LSSPLDCLLCRSLVDRVA 103
             S   C LCRSLV+ +A
Sbjct: 156 FHSHSTCPLCRSLVESLA 168

[Close]

BLAST of Sed0027085 vs. ExPASy Swiss-Prot
Match: Q9C7I1 (RING-H2 finger protein ATL34 OS=Arabidopsis thaliana OX=3702 GN=ATL34 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-09
Identity = 26/45 (57.78%), Postives = 33/45 (73.33%), Query Frame = 0


Query: 52  ERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRS 97
           E  +CL+ FED E +R +P C+H FHASCIDVWLSS   C +CR+
Sbjct: 127 ECAICLNEFEDEETLRLMPPCSHAFHASCIDVWLSSRSTCPVCRA 171

[Close]

BLAST of Sed0027085 vs. ExPASy TrEMBL
Match: A0A5D3BXP3 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001170 PE=3 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 2.1e-35
Identity = 85/143 (59.44%), Postives = 100/143 (69.93%), Query Frame = 0


Query: 1   MLGWSNCCCRSPGTTEPVKNFKHEDSNVIQISTIMYTYKKENETEETNTETERVLCLSPF 60
           MLGW NCCCRSP  T+ VKN K+EDSN+I+ISTIM  YKKEN++EETN  +E  LCLSP 
Sbjct: 94  MLGWFNCCCRSPEMTD-VKNIKYEDSNLIKISTIM--YKKENKSEETNIPSECALCLSPC 153

Query: 61  EDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLVDRVA---------------LVV 120
           EDGECIR+L  CNHVFHASCIDVWL S  +C LCR+ +D VA               +V+
Sbjct: 154 EDGECIRKLLACNHVFHASCIDVWLYSHSNCPLCRTTLDHVACNNGELTSGVVNSHVVVI 213

Query: 121 NNNLRIALSACVSRREVEPENMV 129
           NN+L+I LS   SRR    ENMV
Sbjct: 214 NNSLQIGLSLHESRRGSPSENMV 233

[Close]

BLAST of Sed0027085 vs. ExPASy TrEMBL
Match: A0A0A0KAX6 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_7G450560 PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 6.2e-35
Identity = 80/139 (57.55%), Postives = 100/139 (71.94%), Query Frame = 0


Query: 1   MLGWSNCCCRSPGTTEPVKNFKHEDSNVIQISTIMYTYKKENETEETNTETERVLCLSPF 60
           +LGW NCCCRSP  T  VKN K+EDSN+++ISTIM  YKKEN++EETN  +E  LCLSP+
Sbjct: 28  ILGWFNCCCRSPEMTN-VKNIKYEDSNLMKISTIM--YKKENKSEETNITSECALCLSPY 87

Query: 61  EDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLVDRVALV-----------VNNNL 120
           EDGECIR+L  CNHVFHASCID+WL S  +C LCR+ + RVA +           ++N+L
Sbjct: 88  EDGECIRELLACNHVFHASCIDIWLYSHSNCPLCRTPLGRVACINGELTSGVVVAISNSL 147

Query: 121 RIALSACVSRREVEPENMV 129
           +I  S   S+RE  PENMV
Sbjct: 148 QIETSTHGSQREASPENMV 163

[Close]

BLAST of Sed0027085 vs. ExPASy TrEMBL
Match: A0A2N9J1M7 (RING-type E3 ubiquitin transferase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58113 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 4.2e-15
Identity = 43/91 (47.25%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 12  PGTTEPVKNFKHEDSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLPG 71
           P T  PVK    + S +  +S   + YKK  E  E  +ETE V+CLS FED EC+ +LP 
Sbjct: 38  PTTIGPVKEKGFDSSRLNPLSVTTFKYKKGAENIEAASETECVVCLSSFEDDECVSRLPQ 97

Query: 72  CNHVFHASCIDVWLSSPLDCLLCRSLVDRVA 103
           C H FH  CID+WL S  DC LCR+ +DR++
Sbjct: 98  CKHSFHTPCIDMWLYSHSDCPLCRTPIDRLS 128

[Close]

BLAST of Sed0027085 vs. ExPASy TrEMBL
Match: A0A067L9H5 (RING-type E3 ubiquitin transferase OS=Jatropha curcas OX=180498 GN=JCGZ_24713 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.0e-13
Identity = 42/90 (46.67%), Postives = 53/90 (58.89%), Query Frame = 0


Query: 12  PGTTEPVKNFKHEDSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLPG 71
           PG T P +       N+   S   + YKKE+E  E   ETE V+CLS FED E +R+L  
Sbjct: 38  PGLTSPAEPKDSVSLNLSSYSASTFKYKKESENPEAPPETECVVCLSTFEDEEYVRRLSD 97

Query: 72  CNHVFHASCIDVWLSSPLDCLLCRSLVDRV 102
           C H FHA CID+WL S  DC LCR+ + R+
Sbjct: 98  CRHSFHAPCIDMWLYSHSDCPLCRTPIHRL 127

[Close]

BLAST of Sed0027085 vs. ExPASy TrEMBL
Match: B9S5S5 (RING-type E3 ubiquitin transferase OS=Ricinus communis OX=3988 GN=RCOM_0653430 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.3e-13
Identity = 44/103 (42.72%), Postives = 58/103 (56.31%), Query Frame = 0


Query: 1   MLGW--SNCCCRSPGTTEPVKNFKHEDSNVIQISTIMYTYKKENETEETNTETERVLCLS 60
           MLGW  S+        + P  +      N+   S   + YKK  E  E  +ETE ++CLS
Sbjct: 25  MLGWRTSHHQLSRQELSNPADHKSSVSLNLNPYSASTFKYKKRIENSEVPSETECIVCLS 84

Query: 61  PFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLVDRV 102
            FED E +RQLP C H FHASCID+W+ S  DC LCR+ + R+
Sbjct: 85  DFEDDEYVRQLPRCKHSFHASCIDMWVYSHSDCPLCRTPIHRL 127

[Close]

BLAST of Sed0027085 vs. TAIR 10
Match: AT5G58580.1 (TOXICOS EN LEVADURA 63 )

HSP 1 Score: 68.2 bits (165), Expect = 5.6e-12
Identity = 48/112 (42.86%), Postives = 64/112 (57.14%), Query Frame = 0


Query: 11  SPGTTEPVKNFKHEDSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLP 70
           SP  T   ++ K  DS+V  IS+I     +ENE EE + E E V+CL  +E G+  R+L 
Sbjct: 100 SPAAT-ATRDDKGLDSSV--ISSIPLFVYEENE-EEEDEEEECVICLGLWEAGDFGRKLR 159

Query: 71  GCNHVFHASCIDVWLSSPLDCLLCRSLVDRVALVVNNNLRIALSACVSRREV 123
            C H FH  CID+WLSS   C LCRS V   A+    NL++A++A     EV
Sbjct: 160 NCGHGFHVECIDMWLSSHSTCPLCRSPV-LAAVSDEENLKLAVNAVEEEAEV 206

[Close]

BLAST of Sed0027085 vs. TAIR 10
Match: AT2G27940.1 (RING/U-box superfamily protein )

HSP 1 Score: 64.7 bits (156), Expect = 6.2e-11
Identity = 32/72 (44.44%), Postives = 45/72 (62.50%), Query Frame = 0


Query: 25  DSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVW 84
           DS  ++ S  +Y Y K    ++ N +   V+CLS FE+GE ++ +P C HVFH  C+D W
Sbjct: 117 DSQAVR-SLPVYRYTK--AAKQRNEDC--VICLSDFEEGETVKVIPHCGHVFHVDCVDTW 176

Query: 85  LSSPLDCLLCRS 97
           LSS + C LCRS
Sbjct: 177 LSSYVTCPLCRS 183

[Close]

BLAST of Sed0027085 vs. TAIR 10
Match: AT1G35330.1 (RING/U-box superfamily protein )

HSP 1 Score: 63.9 bits (154), Expect = 1.1e-10
Identity = 26/45 (57.78%), Postives = 33/45 (73.33%), Query Frame = 0


Query: 52  ERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRS 97
           E  +CL+ FED E +R +P C+H FHASCIDVWLSS   C +CR+
Sbjct: 127 ECAICLNEFEDEETLRLMPPCSHAFHASCIDVWLSSRSTCPVCRA 171

[Close]

BLAST of Sed0027085 vs. TAIR 10
Match: AT3G16720.1 (TOXICOS EN LEVADURA 2 )

HSP 1 Score: 63.9 bits (154), Expect = 1.1e-10
Identity = 34/78 (43.59%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 25  DSNVIQISTIMYTYKKENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVW 84
           D NVI+ S  ++T+  E   +      E  +CLS FE+ E  R LP C H FH  CID+W
Sbjct: 96  DPNVIK-SLPVFTFSDETHKD----PIECAVCLSEFEESETGRVLPNCQHTFHVDCIDMW 155

Query: 85  LSSPLDCLLCRSLVDRVA 103
             S   C LCRSLV+ +A
Sbjct: 156 FHSHSTCPLCRSLVESLA 168

[Close]

BLAST of Sed0027085 vs. TAIR 10
Match: AT5G43420.1 (RING/U-box superfamily protein )

HSP 1 Score: 63.9 bits (154), Expect = 1.1e-10
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 0


Query: 41  ENETEETNTETERVLCLSPFEDGECIRQLPGCNHVFHASCIDVWLSSPLDCLLCRSLV 99
           E E EE     E  +CLS F+D E +R +P C+H+FH  CIDVWL +  +C LCR+ V
Sbjct: 126 EGEEEEEKRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRV 183

The following BLAST results are available for this feature:

BLAST of Sed0027085 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7013994.1	7.3e-38	63.04	E3 ubiquitin-protein ligase ATL6, partial [Cucurbita argyrosperma subsp. argyros...	[more]
KAA0059407.1	4.4e-35	59.44	E3 ubiquitin-protein ligase RING1-like [Cucumis melo var. makuwa] >TYK03920.1 E3...	[more]
KAE8646506.1	1.3e-34	57.55	hypothetical protein Csa_015876 [Cucumis sativus]	[more]
KDP40714.1	2.1e-13	46.67	hypothetical protein JCGZ_24713 [Jatropha curcas]	[more]
EEF41012.1	4.8e-13	42.72	conserved hypothetical protein [Ricinus communis]	[more]

BLAST of Sed0027085 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LUZ9	7.9e-11	42.86	RING-H2 finger protein ATL63 OS=Arabidopsis thaliana OX=3702 GN=ATL63 PE=2 SV=1	[more]
Q9SJJ7	8.7e-10	44.44	RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1	[more]
Q9LSW9	1.5e-09	48.28	RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1	[more]
Q8L9T5	1.5e-09	43.59	RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2	[more]
Q9C7I1	1.5e-09	57.78	RING-H2 finger protein ATL34 OS=Arabidopsis thaliana OX=3702 GN=ATL34 PE=2 SV=1	[more]

BLAST of Sed0027085 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BXP3	2.1e-35	59.44	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A0A0KAX6	6.2e-35	57.55	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_7G450560 PE...	[more]
A0A2N9J1M7	4.2e-15	47.25	RING-type E3 ubiquitin transferase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58113...	[more]
A0A067L9H5	1.0e-13	46.67	RING-type E3 ubiquitin transferase OS=Jatropha curcas OX=180498 GN=JCGZ_24713 PE...	[more]
B9S5S5	2.3e-13	42.72	RING-type E3 ubiquitin transferase OS=Ricinus communis OX=3988 GN=RCOM_0653430 P...	[more]

BLAST of Sed0027085 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58580.1	5.6e-12	42.86	TOXICOS EN LEVADURA 63	[more]
AT2G27940.1	6.2e-11	44.44	RING/U-box superfamily protein	[more]
AT1G35330.1	1.1e-10	57.78	RING/U-box superfamily protein	[more]
AT3G16720.1	1.1e-10	43.59	TOXICOS EN LEVADURA 2	[more]
AT5G43420.1	1.1e-10	48.28	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 13..100 e-value: 1.7E-15 score: 58.4
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 55..95 e-value: 2.0E-9 score: 37.6
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 55..95 score: 8.683004
None	No IPR available	PANTHER	PTHR45676:SF84	RING-H2 FINGER PROTEIN ATL52-LIKE	coord: 23..103
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 55..101
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 23..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0027085.1	Sed0027085.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane