Sed0027058 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CGCCTCAGCCTTTTATCGTATTTGGACGAATAACGGTTCAATCTCAGACTCTCGTTTTTATCTTTTTGTTGAGCCCTAGCTTGAGCTCGAACCCTCGTTTTCATCTCCAAACCCTAATTCCCAATTCCAATCCTTCAATCAGCAACCGGAATCCCACCGGAAAAGCTTCTGCTCCGATCAGATATGGAAGATAACAACAACAACAACAACAACAATAACGCCGTGAGTACCGTTACACGGGAGAAGCTGGACCAGGTTGCGGCATGGTTCGCGGCCACCATGTCTTCCGCCTTTTTCTCCTCCTTAGAACGATTCTCTTGCGTCCATGTTGCCACCAATGATATTGATGATGACGACGACGACGATGAAGAAAACGACGACCAGCTTATTTTGACCGTTCAGCCGCGTTCCGATCAATTAGGGCTCCCTGATCAACAAGACGGGTTTGTCGATCTTCCTGTCTGATGGATCTTCTGATTTTATATAGATCTTAATTGCGTAATTGTGATTTTCTGTTTCTTTTTTCTTTTTTCTGTTATTGCTGGTGTTATGTTGAATTTGTTCATTCTCTGTGTTCTTGATTTGCTGTTGTAATGCGATCGTCCTTAAAACCGAGATTGGTTTGTTCATATGTGGATATTATAGGCACAATTCGTAACAATATTGCCAAAAAAATGTTATTGAATCTTTGAGTTGGATT CGCCTCAGCCTTTTATCGTATTTGGACGAATAACGGTTCAATCTCAGACTCTCGTTTTTATCTTTTTGTTGAGCCCTAGCTTGAGCTCGAACCCTCGTTTTCATCTCCAAACCCTAATTCCCAATTCCAATCCTTCAATCAGCAACCGGAATCCCACCGGAAAAGCTTCTGCTCCGATCAGATATGGAAGATAACAACAACAACAACAACAACAATAACGCCGTGAGTACCGTTACACGGGAGAAGCTGGACCAGGTTGCGGCATGGTTCGCGGCCACCATGTCTTCCGCCTTTTTCTCCTCCTTAGAACGATTCTCTTGCGTCCATGTTGCCACCAATGATATTGATGATGACGACGACGACGATGAAGAAAACGACGACCAGCTTATTTTGACCGTTCAGCCGCGTTCCGATCAATTAGGGCTCCCTGATCAACAAGACGGGTTTGTCGATCTTCCTGTCTGATGGATCTTCTGATTTTATATAGATCTTAATTGCGTAATTGTGATTTTCTGTTTCTTTTTTCTTTTTTCTGTTATTGCTGGTGTTATGTTGAATTTGTTCATTCTCTGTGTTCTTGATTTGCTGTTGTAATGCGATCGTCCTTAAAACCGAGATTGGTTTGTTCATATGTGGATATTATAGGCACAATTCGTAACAATATTGCCAAAAAAATGTTATTGAATCTTTGAGTTGGATT ATGGAAGATAACAACAACAACAACAACAACAATAACGCCGTGAGTACCGTTACACGGGAGAAGCTGGACCAGGTTGCGGCATGGTTCGCGGCCACCATGTCTTCCGCCTTTTTCTCCTCCTTAGAACGATTCTCTTGCGTCCATGTTGCCACCAATGATATTGATGATGACGACGACGACGATGAAGAAAACGACGACCAGCTTATTTTGACCGTTCAGCCGCGTTCCGATCAATTAGGGCTCCCTGATCAACAAGACGGGTTTGTCGATCTTCCTGTCTGA MEDNNNNNNNNNAVSTVTREKLDQVAAWFAATMSSAFFSSLERFSCVHVATNDIDDDDDDDEENDDQLILTVQPRSDQLGLPDQQDGFVDLPV Homology
BLAST of Sed0027058 vs. NCBI nr
Match: XP_008437391.1 (PREDICTED: uncharacterized protein LOC103482822 [Cucumis melo] >KAA0042683.1 Trehalase 1 [Cucumis melo var. makuwa] >TYK06086.1 Trehalase 1 [Cucumis melo var. makuwa]) HSP 1 Score: 118.6 bits (296), Expect = 2.8e-23 Identity = 63/86 (73.26%), Postives = 73/86 (84.88%), Query Frame = 0
BLAST of Sed0027058 vs. NCBI nr
Match: KAE8647837.1 (hypothetical protein Csa_000196 [Cucumis sativus]) HSP 1 Score: 112.5 bits (280), Expect = 2.0e-21 Identity = 59/81 (72.84%), Postives = 69/81 (85.19%), Query Frame = 0
BLAST of Sed0027058 vs. NCBI nr
Match: KAG6605572.1 (hypothetical protein SDJN03_02889, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035486.1 hypothetical protein SDJN02_02282, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 111.3 bits (277), Expect = 4.5e-21 Identity = 61/86 (70.93%), Postives = 69/86 (80.23%), Query Frame = 0
BLAST of Sed0027058 vs. NCBI nr
Match: XP_021652063.1 (uncharacterized protein LOC110643856 [Hevea brasiliensis]) HSP 1 Score: 77.4 bits (189), Expect = 7.2e-11 Identity = 47/89 (52.81%), Postives = 56/89 (62.92%), Query Frame = 0
BLAST of Sed0027058 vs. NCBI nr
Match: XP_024168550.1 (uncharacterized protein LOC112175116 [Rosa chinensis] >PRQ16632.1 hypothetical protein RchiOBHm_Chr7g0186341 [Rosa chinensis]) HSP 1 Score: 73.6 bits (179), Expect = 1.0e-09 Identity = 48/85 (56.47%), Postives = 56/85 (65.88%), Query Frame = 0
BLAST of Sed0027058 vs. ExPASy TrEMBL
Match: A0A0A0KK32 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G150380 PE=4 SV=1) HSP 1 Score: 123.6 bits (309), Expect = 4.2e-25 Identity = 65/86 (75.58%), Postives = 74/86 (86.05%), Query Frame = 0
BLAST of Sed0027058 vs. ExPASy TrEMBL
Match: A0A5A7THD9 (Trehalase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001870 PE=4 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 1.4e-23 Identity = 63/86 (73.26%), Postives = 73/86 (84.88%), Query Frame = 0
BLAST of Sed0027058 vs. ExPASy TrEMBL
Match: A0A1S3AUH1 (uncharacterized protein LOC103482822 OS=Cucumis melo OX=3656 GN=LOC103482822 PE=4 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 1.4e-23 Identity = 63/86 (73.26%), Postives = 73/86 (84.88%), Query Frame = 0
BLAST of Sed0027058 vs. ExPASy TrEMBL
Match: A0A2P6P3Z5 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0186341 PE=4 SV=1) HSP 1 Score: 73.6 bits (179), Expect = 5.0e-10 Identity = 48/85 (56.47%), Postives = 56/85 (65.88%), Query Frame = 0
BLAST of Sed0027058 vs. ExPASy TrEMBL
Match: A0A2N9H7W9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS35850 PE=4 SV=1) HSP 1 Score: 73.6 bits (179), Expect = 5.0e-10 Identity = 48/89 (53.93%), Postives = 59/89 (66.29%), Query Frame = 0
BLAST of Sed0027058 vs. TAIR 10
Match: AT4G24026.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 61.6 bits (148), Expect = 3.8e-10 Identity = 31/64 (48.44%), Postives = 46/64 (71.88%), Query Frame = 0
BLAST of Sed0027058 vs. TAIR 10
Match: AT4G10810.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24026.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 53.9 bits (128), Expect = 7.9e-08 Identity = 32/75 (42.67%), Postives = 51/75 (68.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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