Sed0027058 (gene) Chayote v1

Overview
NameSed0027058
Typegene
OrganismSechium edule (Chayote v1)
DescriptionTrehalase 1
LocationLG05: 5286811 .. 5287510 (-)
RNA-Seq ExpressionSed0027058
SyntenySed0027058
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGCCTCAGCCTTTTATCGTATTTGGACGAATAACGGTTCAATCTCAGACTCTCGTTTTTATCTTTTTGTTGAGCCCTAGCTTGAGCTCGAACCCTCGTTTTCATCTCCAAACCCTAATTCCCAATTCCAATCCTTCAATCAGCAACCGGAATCCCACCGGAAAAGCTTCTGCTCCGATCAGATATGGAAGATAACAACAACAACAACAACAACAATAACGCCGTGAGTACCGTTACACGGGAGAAGCTGGACCAGGTTGCGGCATGGTTCGCGGCCACCATGTCTTCCGCCTTTTTCTCCTCCTTAGAACGATTCTCTTGCGTCCATGTTGCCACCAATGATATTGATGATGACGACGACGACGATGAAGAAAACGACGACCAGCTTATTTTGACCGTTCAGCCGCGTTCCGATCAATTAGGGCTCCCTGATCAACAAGACGGGTTTGTCGATCTTCCTGTCTGATGGATCTTCTGATTTTATATAGATCTTAATTGCGTAATTGTGATTTTCTGTTTCTTTTTTCTTTTTTCTGTTATTGCTGGTGTTATGTTGAATTTGTTCATTCTCTGTGTTCTTGATTTGCTGTTGTAATGCGATCGTCCTTAAAACCGAGATTGGTTTGTTCATATGTGGATATTATAGGCACAATTCGTAACAATATTGCCAAAAAAATGTTATTGAATCTTTGAGTTGGATT

mRNA sequence

CGCCTCAGCCTTTTATCGTATTTGGACGAATAACGGTTCAATCTCAGACTCTCGTTTTTATCTTTTTGTTGAGCCCTAGCTTGAGCTCGAACCCTCGTTTTCATCTCCAAACCCTAATTCCCAATTCCAATCCTTCAATCAGCAACCGGAATCCCACCGGAAAAGCTTCTGCTCCGATCAGATATGGAAGATAACAACAACAACAACAACAACAATAACGCCGTGAGTACCGTTACACGGGAGAAGCTGGACCAGGTTGCGGCATGGTTCGCGGCCACCATGTCTTCCGCCTTTTTCTCCTCCTTAGAACGATTCTCTTGCGTCCATGTTGCCACCAATGATATTGATGATGACGACGACGACGATGAAGAAAACGACGACCAGCTTATTTTGACCGTTCAGCCGCGTTCCGATCAATTAGGGCTCCCTGATCAACAAGACGGGTTTGTCGATCTTCCTGTCTGATGGATCTTCTGATTTTATATAGATCTTAATTGCGTAATTGTGATTTTCTGTTTCTTTTTTCTTTTTTCTGTTATTGCTGGTGTTATGTTGAATTTGTTCATTCTCTGTGTTCTTGATTTGCTGTTGTAATGCGATCGTCCTTAAAACCGAGATTGGTTTGTTCATATGTGGATATTATAGGCACAATTCGTAACAATATTGCCAAAAAAATGTTATTGAATCTTTGAGTTGGATT

Coding sequence (CDS)

ATGGAAGATAACAACAACAACAACAACAACAATAACGCCGTGAGTACCGTTACACGGGAGAAGCTGGACCAGGTTGCGGCATGGTTCGCGGCCACCATGTCTTCCGCCTTTTTCTCCTCCTTAGAACGATTCTCTTGCGTCCATGTTGCCACCAATGATATTGATGATGACGACGACGACGATGAAGAAAACGACGACCAGCTTATTTTGACCGTTCAGCCGCGTTCCGATCAATTAGGGCTCCCTGATCAACAAGACGGGTTTGTCGATCTTCCTGTCTGA

Protein sequence

MEDNNNNNNNNNAVSTVTREKLDQVAAWFAATMSSAFFSSLERFSCVHVATNDIDDDDDDDEENDDQLILTVQPRSDQLGLPDQQDGFVDLPV
Homology
BLAST of Sed0027058 vs. NCBI nr
Match: XP_008437391.1 (PREDICTED: uncharacterized protein LOC103482822 [Cucumis melo] >KAA0042683.1 Trehalase 1 [Cucumis melo var. makuwa] >TYK06086.1 Trehalase 1 [Cucumis melo var. makuwa])

HSP 1 Score: 118.6 bits (296), Expect = 2.8e-23
Identity = 63/86 (73.26%), Postives = 73/86 (84.88%), Query Frame = 0

Query: 8  NNNNNAVSTVTREKLDQVAAWFAATMSSAFFSSLERFSCVHVATNDIDDDDDDDEENDDQ 67
          N +NNA+S ++REKLDQVAAW AATMSSAFFSSLERFSCV+VATND+DDDDDDD+     
Sbjct: 3  NTDNNALSILSREKLDQVAAWVAATMSSAFFSSLERFSCVNVATNDLDDDDDDDD----- 62

Query: 68 LILTVQPRSDQLGLPDQQDGFVDLPV 94
          L+L+ QP SDQ+  PDQ DGFVDLPV
Sbjct: 63 LLLSTQPLSDQILPPDQHDGFVDLPV 83

BLAST of Sed0027058 vs. NCBI nr
Match: KAE8647837.1 (hypothetical protein Csa_000196 [Cucumis sativus])

HSP 1 Score: 112.5 bits (280), Expect = 2.0e-21
Identity = 59/81 (72.84%), Postives = 69/81 (85.19%), Query Frame = 0

Query: 8  NNNNNAVSTVTREKLDQVAAWFAATMSSAFFSSLERFSCVHVATNDIDDDDDDDEENDDQ 67
          N +NNA+S ++REKLDQVAAW AATMSSAFFSSLERFSCVHVATN++DDDDDD    DD 
Sbjct: 3  NTDNNALSILSREKLDQVAAWVAATMSSAFFSSLERFSCVHVATNELDDDDDD----DDH 62

Query: 68 LILTVQPRSDQLGLPDQQDGF 89
          L+L+ QP SDQ+ LPDQ DG+
Sbjct: 63 LLLSTQPLSDQILLPDQHDGY 79

BLAST of Sed0027058 vs. NCBI nr
Match: KAG6605572.1 (hypothetical protein SDJN03_02889, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035486.1 hypothetical protein SDJN02_02282, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 111.3 bits (277), Expect = 4.5e-21
Identity = 61/86 (70.93%), Postives = 69/86 (80.23%), Query Frame = 0

Query: 8  NNNNNAVSTVTREKLDQVAAWFAATMSSAFFSSLERFSCVHVATNDIDDDDDDDEENDDQ 67
          N NNN +S ++REKLDQVAAW AATMSSAFFSSLERFSCV++ATND DDDDDD    D+Q
Sbjct: 3  NTNNNVLSILSREKLDQVAAWVAATMSSAFFSSLERFSCVNIATNDPDDDDDD----DNQ 62

Query: 68 LILTVQPRSDQLGLPDQQDGFVDLPV 94
           + + Q RSDQ    DQQDGFVDLPV
Sbjct: 63 FLASDQLRSDQFPSSDQQDGFVDLPV 84

BLAST of Sed0027058 vs. NCBI nr
Match: XP_021652063.1 (uncharacterized protein LOC110643856 [Hevea brasiliensis])

HSP 1 Score: 77.4 bits (189), Expect = 7.2e-11
Identity = 47/89 (52.81%), Postives = 56/89 (62.92%), Query Frame = 0

Query: 5  NNNNNNNNAVSTVTREKLDQVAAWFAATMSSAFFSSLERFSCVHVATNDIDDDDDDDEEN 64
          N+NN   N    V+ E L+QVA W +AT+ SAFFSSLERFSCV+VAT D DDDD++DE  
Sbjct: 3  NDNNATTNTTGIVSMENLNQVANWVSATVISAFFSSLERFSCVNVATTDPDDDDNEDEAK 62

Query: 65 DDQLILTVQPRSDQLGLPDQQDGFVDLPV 94
          D  L LT  P         Q+D   DLPV
Sbjct: 63 DSPLALTTNPH--------QRDDVSDLPV 83

BLAST of Sed0027058 vs. NCBI nr
Match: XP_024168550.1 (uncharacterized protein LOC112175116 [Rosa chinensis] >PRQ16632.1 hypothetical protein RchiOBHm_Chr7g0186341 [Rosa chinensis])

HSP 1 Score: 73.6 bits (179), Expect = 1.0e-09
Identity = 48/85 (56.47%), Postives = 56/85 (65.88%), Query Frame = 0

Query: 1  MEDNNNNNNNNNAVSTVTREKLDQVAAWFAATMSSAFFSSLERFSCVHVATNDIDDDDDD 60
          MED N N NN    + ++RE +D VA W +AT+SSAFFSSLERFSCV+VAT D D+DDDD
Sbjct: 1  MEDGNPNPNN----AIISRETIDSVAGWVSATVSSAFFSSLERFSCVNVATTDADEDDDD 60

Query: 61 DEENDDQLILTVQPRSDQLGLPDQQ 86
          DE     L LT       L  PDQQ
Sbjct: 61 DEAAHRPLALT------DLTHPDQQ 75

BLAST of Sed0027058 vs. ExPASy TrEMBL
Match: A0A0A0KK32 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G150380 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.2e-25
Identity = 65/86 (75.58%), Postives = 74/86 (86.05%), Query Frame = 0

Query: 8  NNNNNAVSTVTREKLDQVAAWFAATMSSAFFSSLERFSCVHVATNDIDDDDDDDEENDDQ 67
          N +NNA+S ++REKLDQVAAW AATMSSAFFSSLERFSCVHVATN++DDDDDD    DD 
Sbjct: 3  NTDNNALSILSREKLDQVAAWVAATMSSAFFSSLERFSCVHVATNELDDDDDD----DDH 62

Query: 68 LILTVQPRSDQLGLPDQQDGFVDLPV 94
          L+L+ QP SDQ+ LPDQ DGFVDLPV
Sbjct: 63 LLLSTQPLSDQILLPDQHDGFVDLPV 84

BLAST of Sed0027058 vs. ExPASy TrEMBL
Match: A0A5A7THD9 (Trehalase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001870 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.4e-23
Identity = 63/86 (73.26%), Postives = 73/86 (84.88%), Query Frame = 0

Query: 8  NNNNNAVSTVTREKLDQVAAWFAATMSSAFFSSLERFSCVHVATNDIDDDDDDDEENDDQ 67
          N +NNA+S ++REKLDQVAAW AATMSSAFFSSLERFSCV+VATND+DDDDDDD+     
Sbjct: 3  NTDNNALSILSREKLDQVAAWVAATMSSAFFSSLERFSCVNVATNDLDDDDDDDD----- 62

Query: 68 LILTVQPRSDQLGLPDQQDGFVDLPV 94
          L+L+ QP SDQ+  PDQ DGFVDLPV
Sbjct: 63 LLLSTQPLSDQILPPDQHDGFVDLPV 83

BLAST of Sed0027058 vs. ExPASy TrEMBL
Match: A0A1S3AUH1 (uncharacterized protein LOC103482822 OS=Cucumis melo OX=3656 GN=LOC103482822 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.4e-23
Identity = 63/86 (73.26%), Postives = 73/86 (84.88%), Query Frame = 0

Query: 8  NNNNNAVSTVTREKLDQVAAWFAATMSSAFFSSLERFSCVHVATNDIDDDDDDDEENDDQ 67
          N +NNA+S ++REKLDQVAAW AATMSSAFFSSLERFSCV+VATND+DDDDDDD+     
Sbjct: 3  NTDNNALSILSREKLDQVAAWVAATMSSAFFSSLERFSCVNVATNDLDDDDDDDD----- 62

Query: 68 LILTVQPRSDQLGLPDQQDGFVDLPV 94
          L+L+ QP SDQ+  PDQ DGFVDLPV
Sbjct: 63 LLLSTQPLSDQILPPDQHDGFVDLPV 83

BLAST of Sed0027058 vs. ExPASy TrEMBL
Match: A0A2P6P3Z5 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0186341 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 5.0e-10
Identity = 48/85 (56.47%), Postives = 56/85 (65.88%), Query Frame = 0

Query: 1  MEDNNNNNNNNNAVSTVTREKLDQVAAWFAATMSSAFFSSLERFSCVHVATNDIDDDDDD 60
          MED N N NN    + ++RE +D VA W +AT+SSAFFSSLERFSCV+VAT D D+DDDD
Sbjct: 1  MEDGNPNPNN----AIISRETIDSVAGWVSATVSSAFFSSLERFSCVNVATTDADEDDDD 60

Query: 61 DEENDDQLILTVQPRSDQLGLPDQQ 86
          DE     L LT       L  PDQQ
Sbjct: 61 DEAAHRPLALT------DLTHPDQQ 75

BLAST of Sed0027058 vs. ExPASy TrEMBL
Match: A0A2N9H7W9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS35850 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 5.0e-10
Identity = 48/89 (53.93%), Postives = 59/89 (66.29%), Query Frame = 0

Query: 3  DNNNNNNNNNAV--STVTREKLDQVAAWFAATMSSAFFSSLERFSCVHVATNDIDDDDDD 62
          +NNNNNN NN +  S ++REKLDQ A+W  +T++SAFFSSLERFSCV+VAT D DDDDD 
Sbjct: 11 NNNNNNNINNELNNSMMSREKLDQAASWVGSTVASAFFSSLERFSCVNVATTDPDDDDDT 70

Query: 63 DEENDDQLILT-------VQPRSDQLGLP 83
              +D L L        V P +D   LP
Sbjct: 71 SLTQNDSLNLNHNHIQNDVNPPNDVTKLP 99

BLAST of Sed0027058 vs. TAIR 10
Match: AT4G24026.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 61.6 bits (148), Expect = 3.8e-10
Identity = 31/64 (48.44%), Postives = 46/64 (71.88%), Query Frame = 0

Query: 11 NNAVSTVTREKLDQVAAWFAATMSSAFFSSLERFSCVHVATNDIDDDDDDDEENDDQLIL 70
          +N  +T + EK+D  A+W +AT+ SAFF+SLER +CV+++T+  DDDDDDDE +   L L
Sbjct: 9  SNVSTTTSMEKIDHAASWISATVISAFFTSLERCACVNLSTSHDDDDDDDDESHHRPLAL 68

Query: 71 TVQP 75
          +  P
Sbjct: 69 SAAP 72

BLAST of Sed0027058 vs. TAIR 10
Match: AT4G10810.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24026.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 53.9 bits (128), Expect = 7.9e-08
Identity = 32/75 (42.67%), Postives = 51/75 (68.00%), Query Frame = 0

Query: 5  NNNNNNNNAVSTVTREKLDQVAAWFAATMSSAFFSSLERFSCVHVATNDIDDDDDDDEEN 64
          N+  +  + +ST + EKLDQ A+W + T+ SAFF+SLER SCV+++T+  DDDD+ +E +
Sbjct: 8  NSTASTASNLSTASLEKLDQAASWVSTTVISAFFASLERCSCVNLSTS--DDDDEGEESH 67

Query: 65 DDQLILTVQPRSDQL 80
          +  L L+  P  D +
Sbjct: 68 NRPLALSAAPHPDDI 80

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008437391.12.8e-2373.26PREDICTED: uncharacterized protein LOC103482822 [Cucumis melo] >KAA0042683.1 Tre... [more]
KAE8647837.12.0e-2172.84hypothetical protein Csa_000196 [Cucumis sativus][more]
KAG6605572.14.5e-2170.93hypothetical protein SDJN03_02889, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_021652063.17.2e-1152.81uncharacterized protein LOC110643856 [Hevea brasiliensis][more]
XP_024168550.11.0e-0956.47uncharacterized protein LOC112175116 [Rosa chinensis] >PRQ16632.1 hypothetical p... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KK324.2e-2575.58Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G150380 PE=4 SV=1[more]
A0A5A7THD91.4e-2373.26Trehalase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001870 P... [more]
A0A1S3AUH11.4e-2373.26uncharacterized protein LOC103482822 OS=Cucumis melo OX=3656 GN=LOC103482822 PE=... [more]
A0A2P6P3Z55.0e-1056.47Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0186341 PE=4... [more]
A0A2N9H7W95.0e-1053.93Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS35850 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G24026.13.8e-1048.44unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT4G10810.17.9e-0842.67unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 73..93
NoneNo IPR availablePANTHERPTHR34061PROTEIN, PUTATIVE-RELATEDcoord: 1..93
NoneNo IPR availablePANTHERPTHR34061:SF9SUBFAMILY NOT NAMEDcoord: 1..93

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0027058.1Sed0027058.1mRNA