Sed0027035 (gene) Chayote v1
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Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CAATCATCAAGCGCATCTTCTTCCCGGTTCTGGTACCTTCCTCTCATATCATTTAAATTCTTGCGCTAAACTTTTCGAATCACAAAAACTTTTATGGGGATTTCGCTCATCTTGTTTCAGATTCCTTGTTCATATGTTTGATTTTCTACTCAATATCGACGAATTTCCTCTTATGTTTATCGATGATTGCTTCTTACATTTTGCACAGAGTGAGCAATAATTTGTTTCGCAGGAAGCTTTTCGAAGTTTGATTCATGGATCCTCAACCCGAACCCGTCAGCTACGTCTGTGGAGGTACGCTTGTTGTGTTCATTGATTCCATGTTTCAAAATCTGCAGAATATTTAGGTATTAGGTTCTGTAATTGGGTGCATATCTTAATCAGTATCAAGTTACTTTGATTACGTTGAACCATCGGGAGTTTAGAACTTAGAAGTTTGTTTATATGAGTCTTAGAAACTTGCACTAAGTATTCACCTGTATTACTATATTTGTATCCTGAGAACTGTAAAATTGGTGTAGATTGTGGAATGGAGAACACTCTGAAGCCGGGCGATGTTATACAGTGCCGGGAGTGTGGTTATCGTATTCTCTACAAGAAGCGCACCCGTCGCAGTAAGATATATCATGTTTTTTCTTTTCCTGAAAGTTATTTCAGACTTTCAAATGATTGACCATAAATTTAGGGGGATTTAACACAACCATGAAAATAAGGTCAAACACTGTGATTGATTGCTTTGGGCAGCTTTGTAATTAGTTGGTCTAATTATAGAGGTTGAATGGTCCCCTTGTGCTTTGAAGTTGTGCTCCCCTCAAGAATCCCAAGTTCGAGATTCACCTATGATATCAATTTGTAGATACGTCGTGTGCCTCCATTGTTTCGATGTCTCTCTGTCGGGTGTGGTTACCTCGAGTATAATGGAGAGAATCTCTGATTTTCGGATTTCAAAGGTTGATTGCATTGCGATCGAGATCCCACTTGTCTTCTTCATGATCTTTAATCTTCTATTTACCTTTTTTAAAGTTCATTTGAAAAACCATAAAATTGATCATCTCAAGAAATCATGTTATCAACTCAGTTTGTTATTATTTGTATAAATGCTACCCTATCTCCCATAATTATAGTTTTTCCTCCTTCCTCTCTAATTGAAGGGGTCTGTTGTAATTTCCTCCTTGGACCCTTTCTTCTGCATTTTCATTGATCTATTAAATGGTTTTTTGTTTTTTAAACTCAATTTTGCAACTGTCGATTATCAGGATGTAGTGGTTTGGTTAGTATAATGCTGTAACATGCTGTATTTGAGCATTTGTTCAACTTAATCTTTGATGGTAATTAACTTGCAAAAATGTTTCTGGGTGGTATCTCATTAGATAGTATGCTATTCCACCTCAAATCCTATTGACTCTGAACAAATCCTATTGACTCTGAAAGGAGTAGATAACTGTCTTCTAAAGGTTGTGGGGCCCCACTTGTTCTGTTCTATGTGAGATCCCCTCAACATGCCCCTCTCAAGATGGTCTCTTTAGATTTATCACTCTTGAATCGAATTTCAAATTTATTTTTATTGAACCAAATATCCATTTAAATCAATTGACAACGAGGAGAGTAGCTTACCTTACTTATAAAGGTTTTGAGGTTTCTACCTTACTTATAAAGGTTTTGAGGTTTCTTCACTTTTTCAAAGTGGAATCCTCAACAATCCTTGCCTTCCTTATGACTTGGGATGCTCTCTAACAAATCTTGACTTTAGATTAAATTAAGACTCTCTATGGGGAATGATGCATCTGTCAATTATCTTTGTTTTGCTTTATTCATAGTTACTGGATGACCCCTGTCATGTAGTTTAGTTTTGTCACTGTTTTTTTATGGCTTTGTTTGATGTGGGTTGGTGTTTTGTATTGTGAAAATATGAAAAGAAATTTCTTCTATACATTTAAGAAAGCTTGCAACGCCTATTACTTTCTGTGTTCTTGATATTTATTTACTTATTTTCGAATTTGAAGCTGATCCGAATTGTTGCTGTTACTGCAGTTGTTCAGTATGAGGCACGCTGAAATGCTTATTCTGGCGATGGACTTTCAGTATCATTGAATATTTTGTAAGTCTCTTTTAGTTAAAACAAAAGTAGAACTCAATGTCTCGAAGACTTCATCGTTATACAAACATGTAATATTGCTGCCATTATTATTGCATGTAGACCTACAGAACTCAATCAACATCCATCCGTGAAACCAAATGGTTTTTTTTCATTTACGGTGAATATTTGCCACACTTTAAAACTCCCAAATTTTTG CAATCATCAAGCGCATCTTCTTCCCGGTTCTGGAAGCTTTTCGAAGTTTGATTCATGGATCCTCAACCCGAACCCGTCAGCTACGTCTGTGGAGATTGTGGAATGGAGAACACTCTGAAGCCGGGCGATGTTATACAGTGCCGGGAGTGTGGTTATCGTATTCTCTACAAGAAGCGCACCCGTCGCATTGTTCAGTATGAGGCACGCTGAAATGCTTATTCTGGCGATGGACTTTCAGTATCATTGAATATTTTGTAAGTCTCTTTTAGTTAAAACAAAAGTAGAACTCAATGTCTCGAAGACTTCATCGTTATACAAACATGTAATATTGCTGCCATTATTATTGCATGTAGACCTACAGAACTCAATCAACATCCATCCGTGAAACCAAATGGTTTTTTTTCATTTACGGTGAATATTTGCCACACTTTAAAACTCCCAAATTTTTG ATGGATCCTCAACCCGAACCCGTCAGCTACGTCTGTGGAGATTGTGGAATGGAGAACACTCTGAAGCCGGGCGATGTTATACAGTGCCGGGAGTGTGGTTATCGTATTCTCTACAAGAAGCGCACCCGTCGCATTGTTCAGTATGAGGCACGCTGA MDPQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR Homology
BLAST of Sed0027035 vs. NCBI nr
Match: XP_003534102.1 (DNA-directed RNA polymerases II, IV and V subunit 12 [Glycine max] >XP_003548293.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Glycine max] >XP_006448405.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Citrus clementina] >XP_007152540.1 hypothetical protein PHAVU_004G138700g [Phaseolus vulgaris] >XP_010265372.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Nelumbo nucifera] >XP_010279451.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Nelumbo nucifera] >XP_010279452.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Nelumbo nucifera] >XP_012093117.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Jatropha curcas] >XP_017439147.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Vigna angularis] >XP_018827042.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Juglans regia] >XP_018849286.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Juglans regia] >XP_020212630.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Cajanus cajan] >XP_020532481.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Jatropha curcas] >XP_024022128.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Morus notabilis] >XP_024022129.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Morus notabilis] >XP_024467616.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Populus trichocarpa] >XP_024950019.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Citrus sinensis] >XP_027359347.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Abrus precatorius] >XP_027923604.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Vigna unguiculata] >XP_028179867.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Glycine soja] >XP_028206203.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Glycine soja] >XP_028779964.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Prosopis alba] >XP_028792622.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Prosopis alba] >XP_031251942.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Pistacia vera] >XP_034903620.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Populus alba] >XP_037491555.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Jatropha curcas] >XP_040995656.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Juglans microcarpa x Juglans regia] >XP_040998615.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Juglans microcarpa x Juglans regia] >XP_042486250.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Macadamia integrifolia] >XP_042513756.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Macadamia integrifolia] >XP_042513758.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Macadamia integrifolia] >XP_042513759.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Macadamia integrifolia] >XP_042513760.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Macadamia integrifolia] >XP_042965036.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Carya illinoinensis] >KAE9608572.1 putative RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4 [Lupinus albus] >KAG5255376.1 DNA-directed RNA polymerase [Salix suchowensis] >OAY39281.1 hypothetical protein MANES_10G081901v8 [Manihot esculenta] >OIV97068.1 hypothetical protein TanjilG_14613 [Lupinus angustifolius] >OVA05531.1 RNA polymerase archaeal subunit P/eukaryotic subunit RPC10 [Macleaya cordata] >BAU02571.1 hypothetical protein VIGAN_11212200 [Vigna angularis var. angularis]) HSP 1 Score: 113.6 bits (283), Expect = 5.0e-22 Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0
BLAST of Sed0027035 vs. NCBI nr
Match: XP_014507408.2 (DNA-directed RNA polymerases II, IV and V subunit 12 [Vigna radiata var. radiata]) HSP 1 Score: 113.6 bits (283), Expect = 5.0e-22 Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0
BLAST of Sed0027035 vs. NCBI nr
Match: XP_021658712.1 (DNA-directed RNA polymerases II, IV and V subunit 12 [Hevea brasiliensis] >XP_030472345.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Syzygium oleosum] >XP_030521604.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Rhodamnia argentea] >XP_030548598.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Rhodamnia argentea] >XP_039160266.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Eucalyptus grandis]) HSP 1 Score: 113.2 bits (282), Expect = 6.5e-22 Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 0
BLAST of Sed0027035 vs. NCBI nr
Match: XP_020244053.1 (DNA-directed RNA polymerases II, IV and V subunit 12 [Asparagus officinalis]) HSP 1 Score: 112.8 bits (281), Expect = 8.5e-22 Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0
BLAST of Sed0027035 vs. NCBI nr
Match: RZC92788.1 (hypothetical protein C5167_029517 [Papaver somniferum]) HSP 1 Score: 112.5 bits (280), Expect = 1.1e-21 Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 0
BLAST of Sed0027035 vs. ExPASy Swiss-Prot
Match: Q9FLM8 (DNA-directed RNA polymerases II, IV and V subunit 12 OS=Arabidopsis thaliana OX=3702 GN=NRPB12 PE=1 SV=1) HSP 1 Score: 105.1 bits (261), Expect = 2.3e-22 Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 0
BLAST of Sed0027035 vs. ExPASy Swiss-Prot
Match: Q3ZBC0 (DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Bos taurus OX=9913 GN=POLR2K PE=1 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 2.2e-12 Identity = 28/49 (57.14%), Postives = 40/49 (81.63%), Query Frame = 0
BLAST of Sed0027035 vs. ExPASy Swiss-Prot
Match: P53803 (DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Homo sapiens OX=9606 GN=POLR2K PE=1 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 2.2e-12 Identity = 28/49 (57.14%), Postives = 40/49 (81.63%), Query Frame = 0
BLAST of Sed0027035 vs. ExPASy Swiss-Prot
Match: Q63871 (DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Mus musculus OX=10090 GN=Polr2k PE=3 SV=2) HSP 1 Score: 72.0 bits (175), Expect = 2.2e-12 Identity = 28/49 (57.14%), Postives = 40/49 (81.63%), Query Frame = 0
BLAST of Sed0027035 vs. ExPASy Swiss-Prot
Match: P48011 (DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc10 PE=1 SV=2) HSP 1 Score: 70.9 bits (172), Expect = 4.8e-12 Identity = 27/49 (55.10%), Postives = 40/49 (81.63%), Query Frame = 0
BLAST of Sed0027035 vs. ExPASy TrEMBL
Match: A0A6A5MJT3 (Putative RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4 OS=Lupinus albus OX=3870 GN=Lal_00020716 PE=3 SV=1) HSP 1 Score: 113.6 bits (283), Expect = 2.4e-22 Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0
BLAST of Sed0027035 vs. ExPASy TrEMBL
Match: A0A1U8AQX5 (DNA-directed RNA polymerases II, IV and V subunit 12 OS=Nelumbo nucifera OX=4432 GN=LOC104603134 PE=3 SV=1) HSP 1 Score: 113.6 bits (283), Expect = 2.4e-22 Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0
BLAST of Sed0027035 vs. ExPASy TrEMBL
Match: C6T1P2 (Uncharacterized protein OS=Glycine max OX=3847 GN=100790164 PE=2 SV=1) HSP 1 Score: 113.6 bits (283), Expect = 2.4e-22 Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0
BLAST of Sed0027035 vs. ExPASy TrEMBL
Match: A0A2I4F5W9 (DNA-directed RNA polymerases II, IV and V subunit 12 OS=Juglans regia OX=51240 GN=LOC108995861 PE=3 SV=1) HSP 1 Score: 113.6 bits (283), Expect = 2.4e-22 Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0
BLAST of Sed0027035 vs. ExPASy TrEMBL
Match: A0A1S3UMW8 (DNA-directed RNA polymerases II, IV and V subunit 12 OS=Vigna radiata var. radiata OX=3916 GN=LOC106767094 PE=3 SV=2) HSP 1 Score: 113.6 bits (283), Expect = 2.4e-22 Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0
BLAST of Sed0027035 vs. TAIR 10
Match: AT5G41010.1 (DNA directed RNA polymerase, 7 kDa subunit ) HSP 1 Score: 105.1 bits (261), Expect = 1.6e-23 Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 0
BLAST of Sed0027035 vs. TAIR 10
Match: AT1G53690.1 (DNA directed RNA polymerase, 7 kDa subunit ) HSP 1 Score: 68.2 bits (165), Expect = 2.2e-12 Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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