Sed0027028 (gene) Chayote v1

Overview


Name	Sed0027028
Type	gene
Organism	Sechium edule (Chayote v1)
Description	BHLH transcription factor
Location	LG12: 30485292 .. 30485661 (-)
RNA-Seq Expression	Sed0027028
Synteny	Sed0027028

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAGCAGAAGATCCAGATCTAGGCAAACAAGCAGCTCGAGATCAATCTCCGACGACCAAATCAACGATCTCGTTACCAAATTGCAGCAACTTCTCCCCGAGATTCGCCACAGGCAATCCGAAAAGGTGACACAAACTACTCTCTTATTTCTATATCCATTCCATCGGAATGACTTTCTTTCTGTTCTGATACTATGTTGAATAATTGTACTCGCAGGTTTCGCCTGCAAAAGTGTTGCAAGACATATGTAAGTACATAACGACGCTGCACGAAGAGGTGGATGGATTGAGTGAGAGGCTTGCAGAGTTGTTGGCAACTACTGATACTGCTCAAGCTGCCATTATTAGGAACTTACTTATGCAATAG

mRNA sequence

ATGTCAAGCAGAAGATCCAGATCTAGGCAAACAAGCAGCTCGAGATCAATCTCCGACGACCAAATCAACGATCTCGTTACCAAATTGCAGCAACTTCTCCCCGAGATTCGCCACAGGCAATCCGAAAAGGTTTCGCCTGCAAAAGTGTTGCAAGACATATGTAAGTACATAACGACGCTGCACGAAGAGGTGGATGGATTGAGTGAGAGGCTTGCAGAGTTGTTGGCAACTACTGATACTGCTCAAGCTGCCATTATTAGGAACTTACTTATGCAATAG

Coding sequence (CDS)

ATGTCAAGCAGAAGATCCAGATCTAGGCAAACAAGCAGCTCGAGATCAATCTCCGACGACCAAATCAACGATCTCGTTACCAAATTGCAGCAACTTCTCCCCGAGATTCGCCACAGGCAATCCGAAAAGGTTTCGCCTGCAAAAGTGTTGCAAGACATATGTAAGTACATAACGACGCTGCACGAAGAGGTGGATGGATTGAGTGAGAGGCTTGCAGAGTTGTTGGCAACTACTGATACTGCTCAAGCTGCCATTATTAGGAACTTACTTATGCAATAG

Protein sequence

MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTLHEEVDGLSERLAELLATTDTAQAAIIRNLLMQ

Homology

[Close]

BLAST of Sed0027028 vs. NCBI nr
Match: XP_008453188.1 (PREDICTED: transcription factor PRE3-like [Cucumis melo])

HSP 1 Score: 139.0 bits (349), Expect = 2.0e-29
Identity = 76/92 (82.61%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 1  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTL 60
          MSSRRSRSRQ+ SSRSI+DDQINDLV+KLQQLLPEIRHRQS+KVS AKVLQ+ C YI  L
Sbjct: 1  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRNL 60

Query: 61 HEEVDGLSERLAELLATTDTAQAAIIRNLLMQ 93
          H EVD LSERL+ELLAT+DTAQAAIIR+LLMQ
Sbjct: 61 HREVDDLSERLSELLATSDTAQAAIIRSLLMQ 92

[Close]

BLAST of Sed0027028 vs. NCBI nr
Match: NP_001235265.1 (Transcription factor PRE3-like [Glycine max] >XP_028229117.1 transcription factor PRE3-like [Glycine soja] >ACU16765.1 unknown [Glycine max] >ALA09128.1 bHLH transcription factor, partial [Glycine max] >KAG5035493.1 hypothetical protein JHK87_010403 [Glycine soja] >KAG5049717.1 hypothetical protein JHK85_010820 [Glycine max] >KAG5066798.1 hypothetical protein JHK86_010529 [Glycine max])

HSP 1 Score: 138.7 bits (348), Expect = 2.6e-29
Identity = 76/92 (82.61%), Postives = 85/92 (92.39%), Query Frame = 0


Query: 1  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTL 60
          MSSRRSRSRQTSSSR+I+DDQINDLV+KLQQLLPEIR R+S+KVS +KVLQ+ C YI +L
Sbjct: 1  MSSRRSRSRQTSSSRNITDDQINDLVSKLQQLLPEIRDRRSDKVSASKVLQETCNYIRSL 60

Query: 61 HEEVDGLSERLAELLATTDTAQAAIIRNLLMQ 93
          H EVD LSERL+ELLATTDTAQAAIIRNLLMQ
Sbjct: 61 HREVDDLSERLSELLATTDTAQAAIIRNLLMQ 92

[Close]

BLAST of Sed0027028 vs. NCBI nr
Match: XP_020234594.1 (transcription factor PRE3 [Cajanus cajan])

HSP 1 Score: 138.3 bits (347), Expect = 3.4e-29
Identity = 76/92 (82.61%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 1  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTL 60
          MSSRRSRSRQTSSSR+I+DDQINDLV+KLQQLLPEIR R S+KVS +KVLQ+ C YI +L
Sbjct: 1  MSSRRSRSRQTSSSRNITDDQINDLVSKLQQLLPEIRDRSSDKVSASKVLQETCNYIRSL 60

Query: 61 HEEVDGLSERLAELLATTDTAQAAIIRNLLMQ 93
          H EVD LSERL+ELLATTDTAQAAIIRNLLMQ
Sbjct: 61 HREVDDLSERLSELLATTDTAQAAIIRNLLMQ 92

[Close]

BLAST of Sed0027028 vs. NCBI nr
Match: XP_004138158.1 (transcription factor PRE3-like [Cucumis sativus] >KAE8652414.1 hypothetical protein Csa_013458 [Cucumis sativus])

HSP 1 Score: 137.9 bits (346), Expect = 4.4e-29
Identity = 75/92 (81.52%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 1  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTL 60
          MSSRRSRSRQ+ SSRSI+DDQINDLV+KLQQLLPEIRHRQS+KVS +KVLQ+ C YI  L
Sbjct: 1  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSASKVLQETCNYIRNL 60

Query: 61 HEEVDGLSERLAELLATTDTAQAAIIRNLLMQ 93
          H EVD LSERL+ELLAT+DTAQAAIIR+LLMQ
Sbjct: 61 HREVDDLSERLSELLATSDTAQAAIIRSLLMQ 92

[Close]

BLAST of Sed0027028 vs. NCBI nr
Match: TKY73406.1 (Transcription factor PRE3 [Spatholobus suberectus])

HSP 1 Score: 137.9 bits (346), Expect = 4.4e-29
Identity = 76/92 (82.61%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 1  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTL 60
          MSSRRSRSRQTSSSR+I+DDQINDLV+KLQQLLPEIR R+S+KVS +KVLQD C YI +L
Sbjct: 1  MSSRRSRSRQTSSSRNITDDQINDLVSKLQQLLPEIRDRRSDKVSASKVLQDTCNYIRSL 60

Query: 61 HEEVDGLSERLAELLATTDTAQAAIIRNLLMQ 93
          H EVD LSERL+ELLATTDTAQAAIIRNLL Q
Sbjct: 61 HREVDDLSERLSELLATTDTAQAAIIRNLLRQ 92

[Close]

BLAST of Sed0027028 vs. ExPASy Swiss-Prot
Match: Q9CA64 (Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.1e-25
Identity = 65/93 (69.89%), Postives = 77/93 (82.80%), Query Frame = 0


Query: 1  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIR-HRQSEKVSPAKVLQDICKYITT 60
          MS RRSRSRQ+S +  IS+DQINDL+ KLQQLLPE+R  R+S+KVS A+VLQD C YI  
Sbjct: 1  MSGRRSRSRQSSGTSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRN 60

Query: 61 LHEEVDGLSERLAELLATTDTAQAAIIRNLLMQ 93
          LH EVD LSERL+ELLA +DTAQAA+IR+LL Q
Sbjct: 61 LHREVDDLSERLSELLANSDTAQAALIRSLLTQ 93

[Close]

BLAST of Sed0027028 vs. ExPASy Swiss-Prot
Match: B8APB5 (Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.5e-22
Identity = 62/93 (66.67%), Postives = 79/93 (84.95%), Query Frame = 0


Query: 1  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTL 60
          MSSRRSRSRQ+ SSR I+D+QI+DLV+KLQ LLPE R R +++V  ++VLQ+ C YI +L
Sbjct: 1  MSSRRSRSRQSGSSR-ITDEQISDLVSKLQDLLPEARLRSNDRVPSSRVLQETCNYIRSL 60

Query: 61 HEEVDGLSERLAELLATTD--TAQAAIIRNLLM 92
          H+EVD LSERL+ELLAT+D  +AQAAIIR+LLM
Sbjct: 61 HQEVDDLSERLSELLATSDMSSAQAAIIRSLLM 92

[Close]

BLAST of Sed0027028 vs. ExPASy Swiss-Prot
Match: Q0DUR2 (Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.5e-22
Identity = 62/93 (66.67%), Postives = 79/93 (84.95%), Query Frame = 0


Query: 1  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTL 60
          MSSRRSRSRQ+ SSR I+D+QI+DLV+KLQ LLPE R R +++V  ++VLQ+ C YI +L
Sbjct: 1  MSSRRSRSRQSGSSR-ITDEQISDLVSKLQDLLPEARLRSNDRVPSSRVLQETCNYIRSL 60

Query: 61 HEEVDGLSERLAELLATTD--TAQAAIIRNLLM 92
          H+EVD LSERL+ELLAT+D  +AQAAIIR+LLM
Sbjct: 61 HQEVDDLSERLSELLATSDMSSAQAAIIRSLLM 92

[Close]

BLAST of Sed0027028 vs. ExPASy Swiss-Prot
Match: Q8GW32 (Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.5e-22
Identity = 64/93 (68.82%), Postives = 79/93 (84.95%), Query Frame = 0


Query: 1  MSSRR-SRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITT 60
          MSSRR SRSRQ+ SSR ISDDQI+DLV+KLQ L+PE+R R+S+KVS +KVLQ+ C YI  
Sbjct: 1  MSSRRSSRSRQSGSSR-ISDDQISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRN 60

Query: 61 LHEEVDGLSERLAELLATTD--TAQAAIIRNLL 91
          LH EVD LS+RL+ELLA+TD  +A+AAIIR+LL
Sbjct: 61 LHREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of Sed0027028 vs. ExPASy Swiss-Prot
Match: Q338G6 (Transcription factor ILI7 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI7 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.0e-20
Identity = 59/91 (64.84%), Postives = 72/91 (79.12%), Query Frame = 0


Query: 3  SRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTLHE 62
          SRRSRSR +S++R I+D+QI DLV+KLQ LLPE R R +++V  A+VLQ+ C YI +LH 
Sbjct: 2  SRRSRSRASSAAR-ITDEQIGDLVSKLQALLPEARLRSNDRVPSARVLQETCSYIRSLHR 61

Query: 63 EVDGLSERLAELLATTD--TAQAAIIRNLLM 92
          EVD LSERLAELLA  D  TAQAA+IR LLM
Sbjct: 62 EVDDLSERLAELLAAADVSTAQAAVIRGLLM 91

[Close]

BLAST of Sed0027028 vs. ExPASy TrEMBL
Match: A0A1S3BWE2 (transcription factor PRE3-like OS=Cucumis melo OX=3656 GN=LOC103493979 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 9.6e-30
Identity = 76/92 (82.61%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 1  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTL 60
          MSSRRSRSRQ+ SSRSI+DDQINDLV+KLQQLLPEIRHRQS+KVS AKVLQ+ C YI  L
Sbjct: 1  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRNL 60

Query: 61 HEEVDGLSERLAELLATTDTAQAAIIRNLLMQ 93
          H EVD LSERL+ELLAT+DTAQAAIIR+LLMQ
Sbjct: 61 HREVDDLSERLSELLATSDTAQAAIIRSLLMQ 92

[Close]

BLAST of Sed0027028 vs. ExPASy TrEMBL
Match: A0A0B2QKB6 (Transcription factor PRE4 isoform A OS=Glycine soja OX=3848 GN=D0Y65_010017 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.3e-29
Identity = 76/92 (82.61%), Postives = 85/92 (92.39%), Query Frame = 0


Query: 1  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTL 60
          MSSRRSRSRQTSSSR+I+DDQINDLV+KLQQLLPEIR R+S+KVS +KVLQ+ C YI +L
Sbjct: 1  MSSRRSRSRQTSSSRNITDDQINDLVSKLQQLLPEIRDRRSDKVSASKVLQETCNYIRSL 60

Query: 61 HEEVDGLSERLAELLATTDTAQAAIIRNLLMQ 93
          H EVD LSERL+ELLATTDTAQAAIIRNLLMQ
Sbjct: 61 HREVDDLSERLSELLATTDTAQAAIIRNLLMQ 92

[Close]

BLAST of Sed0027028 vs. ExPASy TrEMBL
Match: C6T4Y3 (BHLH transcription factor OS=Glycine max OX=3847 GN=100527636 PE=2 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.3e-29
Identity = 76/92 (82.61%), Postives = 85/92 (92.39%), Query Frame = 0


Query: 1  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTL 60
          MSSRRSRSRQTSSSR+I+DDQINDLV+KLQQLLPEIR R+S+KVS +KVLQ+ C YI +L
Sbjct: 1  MSSRRSRSRQTSSSRNITDDQINDLVSKLQQLLPEIRDRRSDKVSASKVLQETCNYIRSL 60

Query: 61 HEEVDGLSERLAELLATTDTAQAAIIRNLLMQ 93
          H EVD LSERL+ELLATTDTAQAAIIRNLLMQ
Sbjct: 61 HREVDDLSERLSELLATTDTAQAAIIRNLLMQ 92

[Close]

BLAST of Sed0027028 vs. ExPASy TrEMBL
Match: I3S777 (BHLH domain-containing protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.7e-29
Identity = 75/92 (81.52%), Postives = 85/92 (92.39%), Query Frame = 0


Query: 1  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTL 60
          MSSRRSRSRQTSSSR+I+DDQI+DLV+KLQQLLPEIR R+S+KVS +KVLQ+ C YI +L
Sbjct: 1  MSSRRSRSRQTSSSRNITDDQIHDLVSKLQQLLPEIRERRSDKVSASKVLQETCNYIRSL 60

Query: 61 HEEVDGLSERLAELLATTDTAQAAIIRNLLMQ 93
          H EVD LSERL+ELLATTDTAQAAIIRNLLMQ
Sbjct: 61 HREVDDLSERLSELLATTDTAQAAIIRNLLMQ 92

[Close]

BLAST of Sed0027028 vs. ExPASy TrEMBL
Match: A0A0L9VNK9 (BHLH domain-containing protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan10g235400 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 6.3e-29
Identity = 74/92 (80.43%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 1  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITTL 60
          MSSRRSRSRQT +SR+I+DDQINDLV+KLQQLLPEIR R+S+KVS +KVLQ+ C YI +L
Sbjct: 1  MSSRRSRSRQTGTSRNITDDQINDLVSKLQQLLPEIRERRSDKVSASKVLQETCNYIKSL 60

Query: 61 HEEVDGLSERLAELLATTDTAQAAIIRNLLMQ 93
          H EVD LSERL+ELLATTDTAQAAIIRNLLMQ
Sbjct: 61 HREVDDLSERLSELLATTDTAQAAIIRNLLMQ 92

[Close]

BLAST of Sed0027028 vs. TAIR 10
Match: AT1G74500.1 (activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 )

HSP 1 Score: 115.5 bits (288), Expect = 2.2e-26
Identity = 65/93 (69.89%), Postives = 77/93 (82.80%), Query Frame = 0


Query: 1  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEIR-HRQSEKVSPAKVLQDICKYITT 60
          MS RRSRSRQ+S +  IS+DQINDL+ KLQQLLPE+R  R+S+KVS A+VLQD C YI  
Sbjct: 1  MSGRRSRSRQSSGTSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRN 60

Query: 61 LHEEVDGLSERLAELLATTDTAQAAIIRNLLMQ 93
          LH EVD LSERL+ELLA +DTAQAA+IR+LL Q
Sbjct: 61 LHREVDDLSERLSELLANSDTAQAALIRSLLTQ 93

[Close]

BLAST of Sed0027028 vs. TAIR 10
Match: AT1G26945.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 105.9 bits (263), Expect = 1.7e-23
Identity = 64/93 (68.82%), Postives = 79/93 (84.95%), Query Frame = 0


Query: 1  MSSRR-SRSRQTSSSRSISDDQINDLVTKLQQLLPEIRHRQSEKVSPAKVLQDICKYITT 60
          MSSRR SRSRQ+ SSR ISDDQI+DLV+KLQ L+PE+R R+S+KVS +KVLQ+ C YI  
Sbjct: 1  MSSRRSSRSRQSGSSR-ISDDQISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRN 60

Query: 61 LHEEVDGLSERLAELLATTD--TAQAAIIRNLL 91
          LH EVD LS+RL+ELLA+TD  +A+AAIIR+LL
Sbjct: 61 LHREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of Sed0027028 vs. TAIR 10
Match: AT3G47710.1 (BANQUO 3 )

HSP 1 Score: 99.0 bits (245), Expect = 2.1e-21
Identity = 58/93 (62.37%), Postives = 77/93 (82.80%), Query Frame = 0


Query: 1  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEI-RHRQSEKVSPAKVLQDICKYITT 60
          MSSR+SRSRQT +S  I+D+QINDLV +L +LLPE+  +R+S KVS ++VLQ+ C YI  
Sbjct: 1  MSSRKSRSRQTGAS-MITDEQINDLVLQLHRLLPELANNRRSGKVSASRVLQETCSYIRN 60

Query: 61 LHEEVDGLSERLAELLATTDTAQAAIIRNLLMQ 93
          L +EVD LSERL++LL +TD+AQAA+IR+LLMQ
Sbjct: 61 LSKEVDDLSERLSQLLESTDSAQAALIRSLLMQ 92

[Close]

BLAST of Sed0027028 vs. TAIR 10
Match: AT3G28857.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 89.4 bits (220), Expect = 1.7e-18
Identity = 55/94 (58.51%), Postives = 73/94 (77.66%), Query Frame = 0


Query: 1  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEI-RHRQSEKVSPAKVLQDICKYITT 60
          MS+R  RSRQTS++  ISDDQ+ DLV+KL+Q LPEI   R+S+KVS +KVLQ+ C YI  
Sbjct: 1  MSNR--RSRQTSNASRISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRK 60

Query: 61 LHEEVDGLSERLAELLATT--DTAQAAIIRNLLM 92
          LH EVD LS+RL++LL +   D+ +AA+IR+LLM
Sbjct: 61 LHREVDNLSDRLSQLLDSVDEDSPEAAVIRSLLM 92

[Close]

BLAST of Sed0027028 vs. TAIR 10
Match: AT5G39860.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 85.5 bits (210), Expect = 2.4e-17
Identity = 53/94 (56.38%), Postives = 74/94 (78.72%), Query Frame = 0


Query: 1  MSSRRSRSRQTSSSRSISDDQINDLVTKLQQLLPEI-RHRQSEKVSPAKVLQDICKYITT 60
          MS+R  RSRQ+SS+  ISD+Q+ DLV+KL+Q+LPEI + R+S+K S +KVLQ+ C YI  
Sbjct: 1  MSNR--RSRQSSSAPRISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIRN 60

Query: 61 LHEEVDGLSERLAELLATT--DTAQAAIIRNLLM 92
          L+ EVD LSERL++LL +   D+ +AA+IR+LLM
Sbjct: 61 LNREVDNLSERLSQLLESVDEDSPEAAVIRSLLM 92

The following BLAST results are available for this feature:

BLAST of Sed0027028 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008453188.1	2.0e-29	82.61	PREDICTED: transcription factor PRE3-like [Cucumis melo]	[more]
NP_001235265.1	2.6e-29	82.61	Transcription factor PRE3-like [Glycine max] >XP_028229117.1 transcription facto...	[more]
XP_020234594.1	3.4e-29	82.61	transcription factor PRE3 [Cajanus cajan]	[more]
XP_004138158.1	4.4e-29	81.52	transcription factor PRE3-like [Cucumis sativus] >KAE8652414.1 hypothetical prot...	[more]
TKY73406.1	4.4e-29	82.61	Transcription factor PRE3 [Spatholobus suberectus]	[more]

BLAST of Sed0027028 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CA64	3.1e-25	69.89	Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1	[more]
B8APB5	2.5e-22	66.67	Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV...	[more]
Q0DUR2	2.5e-22	66.67	Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 ...	[more]
Q8GW32	2.5e-22	68.82	Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1	[more]
Q338G6	3.0e-20	64.84	Transcription factor ILI7 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI7 PE=3 ...	[more]

BLAST of Sed0027028 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BWE2	9.6e-30	82.61	transcription factor PRE3-like OS=Cucumis melo OX=3656 GN=LOC103493979 PE=4 SV=1	[more]
A0A0B2QKB6	1.3e-29	82.61	Transcription factor PRE4 isoform A OS=Glycine soja OX=3848 GN=D0Y65_010017 PE=4...	[more]
C6T4Y3	1.3e-29	82.61	BHLH transcription factor OS=Glycine max OX=3847 GN=100527636 PE=2 SV=1	[more]
I3S777	3.7e-29	81.52	BHLH domain-containing protein OS=Lotus japonicus OX=34305 PE=2 SV=1	[more]
A0A0L9VNK9	6.3e-29	80.43	BHLH domain-containing protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan10g23...	[more]

BLAST of Sed0027028 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G74500.1	2.2e-26	69.89	activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1	[more]
AT1G26945.1	1.7e-23	68.82	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G47710.1	2.1e-21	62.37	BANQUO 3	[more]
AT3G28857.1	1.7e-18	58.51	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT5G39860.1	2.4e-17	56.38	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 57..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR46446:SF3	TRANSCRIPTION FACTOR PRE3	coord: 1..91
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 2..88 e-value: 3.1E-9 score: 38.6
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 20..78
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 20..60 e-value: 3.1E-5 score: 23.9
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 6..60 score: 9.038526
IPR044293	Transcription factor PRE	PANTHER	PTHR46446	TRANSCRIPTION FACTOR PRE	coord: 1..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0027028.1	Sed0027028.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0040008	regulation of growth
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity