Sed0026975 (gene) Chayote v1

Overview


Name	Sed0026975
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Ethylene-responsive transcription factor-like protein
Location	LG09: 32127667 .. 32130967 (+)
RNA-Seq Expression	Sed0026975
Synteny	Sed0026975

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTTGGACTCCAATCATGATGCTGTCACGATTGATTTTATCAGTAACTGCCATGAATATGTAAACCAAAAACGTGTTCCATGTACCATTTAGCCTTTCTCCTCTCTCGTTACCTTTTTTTTTCTTTCTTTCAAACATTTTCTTGCGTTCTTTTGGTGCTGAGCTTGTGTACAAATGAATGGAGTCCTTCAATCCACCATCTTCTCTTGAGTTTTATACAAAGTAAAGTTGAAAATCATGTTTTTTTTTTCTTTAGGTGAATGGATTGTGCTTGAAATGAATGCTTCCATATTTAGATTGATGCACCAAAACACAACTTTTATTGTATTCAATATCGCCATGTCATTATCTTAATGAGCTTCCATCCTTGTTGAATTGAACCTCTTGTTTTGGTTAGTATCCGTATTTACCAGCTTTATCGATTTTTTTAGTCTACAGGCTCTCACCAGTCACCACAATAATGTTAGTATTCTCTGTATAAGATCAAAGGTTGCATTTAAAATTTGACTGTAACTGCTCTGCTACTCATTCGGATCCAAGGTGGGGTGGATTCATGATAAACAACTCATCACATACTTTGTGTACGGTGTAAAGATCGATATCATCTATGGTGAGCTTAAGAAGGCGCAGGCTCTTGGGACTATGCTCCGGTACGTTTGCATACTGTTGTGTGATAAATAGTTTAGCAATCATATTACTTTTGTAGAGACTTTGTATTTTTGTCTTGCTTTCTAAGTATATTAGTTCATGGGATATTCCAGGGAAAAGTTCATTCGTTGCTCCACTTCCCAAGTTTTCAGATCATGGGACCGCTCCCGAAAATCCTAGTCCGAGTAACAAACTTCTCACTGTGCATCCCATGTCTTCTGATAATGTTAGCATCACAGATAGGGTAAGGTTACTTTTGATCGATATTGGAAGTGATATAAATTTACATCTAGATAACTTCATTGGTTAAGCTTCCTAATTTTTGCTGATAAAAGTCAGTGAAATATTTTCTGCATTTCATTCTTTACATGGTACTTAAGATAGTGCAACCTTAGTACATAACATATGAAGATCTATGATTGCAACACCTTTTTCCTTAATCTTATTATATGCTTTTCTTCTGGAACAGCGGCTTCAAATATTCTAAAAACCATATCTAGTTTAAGATGTTTGTTTTAAAGCTTTATCTCAGATAATATATTTTATCTCTTAAGTATGCTACAGAAAGTCATGTAAGCCTTGGCTGAATAAAAAGGAAATCCCTGGCCTGTTAATATATTCATTGTATTATCTCTCTCTCGTAAAAAGCCTGAGAAGACATCGTGGGCTGTCGAACTTGATCTCGTAATCAGGGATCGGCGGATTAAACTTGTGTAACTCGTAAAATTTGATGCTTCCATTTCTCTTTGGTTTGGTTCATAAAATACACAATCTGAAGGGCACACAGATCAGGTAAAGGGAGGAAAAAGCCTTTTTCCCCTCTTTTTTTCTTAATTGCATTCTTGTGACTGACTTCATTTTTACAAGTTCAACATTCAGAGGGTCTTCTTGATGACCATTTAATGAATATGTAATTCTATCACAATTTGATTTGTTTCATTATACCCTTGAAAAATCTGGGTCTAAATCTACCCTTGATATTTAGTGTCAAATTTAAATTTCCTGGTTCAGTGTATATGCTTTTTGAGCATGTGGACTTATAATCTGATAGTTCTTTATTTCCCAAATTTAATCTTTTCTTACAGACCTCTGTTGTAAATATGGAATCCAGTTTTGCAAATGCATTGGATTTGGCCTCGCTGAAAGAACAGTCGAATCAGCCTACTTCAGGTTATCTGATTAAAAACATGTTTATCAAATGATCATATTTTCGTTGATGTTAATGTTTTTGAGTTATATAGTATTTCTCTATGCATTTGATCAGGATGCTTATTTTTGCTTAATATTACTGTTTCCATTTTTTCTTTTCTGTGGCTATGAAATCTTATATGTGGTTTGAAATTTTTAGTTTGTTGCACAGTTCCTTTCTCCAATTTTTTAGTTGGCATATCTATCATTTTCATTTATAATTTGAACACTGCTTGCGTAGTTAACAATAGCATAGCTCAACTGGCATAAGTGTTGTCCTTAGCTAAGAGGGTCACGTGTTTAAATTTTCAATTGTTCTTGAACTAAAAAACACTTGTTATATATGTCGTGAGGACCTTCTGTTTTTGTGCAAATTATCAATTTGCAGCGGACACGACGAATGACTTCATGACAACCATCGTGTAACCACTCTACGGCACTTGTTTTATGCTTTTACATATTCTTAGCTCGATTAGTGCTGTAGGTTTCATTCTTGCCCGTATGTCAATGTACACAACGTTCGAGTTTGACTACGTGCATTTCGTCTCTCTTAATACATGGACTTGGGTTTGTAGGGCATCCGTTAAAACATAGAAAGAGACATAGGAGAAAAAATTCTCATAATGAAGAACTATCAATCATGAGGGGCGTCTACTTTAAGAACATGAAATGGCAGGCTGCGATTAAGGTCGACAAGAAACAGATACATTTGGGAACATTTGGTTCACAAGAAGAGGCTGCTCGTTTGTACGACAGGTATTCGCTTTTCGAATTCTCTAATTTTGTTCTTTAACAATTCGCATTCCGAGTAATAAATGGAATATGCAGAGTCGAATTACATGTACCATATATTTTATCTATAGGGATTAAGAAACTAAATATAGACAAGTAAAGATACATAAATGCATACATTTATAGACAAGAGTTCATCTACGTATATTTTTACATACGCATATATATATACATACACATGTACAAGGAACACGTATGGTGCATAACATCATGTAATCTAACATTGAACTTAAGGTGCATAGCTGTTGTGTATCATTTGGTTCATTTATTCATCAGGTTGTTAAGTTAACAGGAATAAACTTGATCCACATACACTTCTGTGGGTTTTGCAGGGCTGCTTTTGTCTGTGGACGGGAACCGAATTTCGAACTACCCGAGGAGGAGAAGCAAGAACTCCAAAAGTTCAAATGGGAAGACTTCTTAGAAATGACTCGCCACGCAATTACGAACAAAAGTAGTTGTCGTGCTTTGCAGCTCTCAAAATCTTTCTTTTTCTTTGTGTTGTTTTTTCATTTGTTATTTGTTTTGATGTCTTTCAGAGCATAAGAGACTTAGCACAGGATCGCCAAAAAAGCTCGGTGCTTCTTCACTACAAATCGACAACACCGACTTCAAGCACGGGTTCACCAGCTTTCCCGTGCGGGAAGACATTGACCCTTCCATCACTTGA

mRNA sequence

ATGCTTTTGGACTCCAATCATGATGCTGTCACGATTGATTTTATCAGGAAAAGTTCATTCGTTGCTCCACTTCCCAAGTTTTCAGATCATGGGACCGCTCCCGAAAATCCTAGTCCGAGTAACAAACTTCTCACTGTGCATCCCATGTCTTCTGATAATGTTAGCATCACAGATAGGACCTCTGTTGTAAATATGGAATCCAGTTTTGCAAATGCATTGGATTTGGCCTCGCTGAAAGAACAGTCGAATCAGCCTACTTCAGGGCATCCGTTAAAACATAGAAAGAGACATAGGAGAAAAAATTCTCATAATGAAGAACTATCAATCATGAGGGGCGTCTACTTTAAGAACATGAAATGGCAGGCTGCGATTAAGGTCGACAAGAAACAGATACATTTGGGAACATTTGGTTCACAAGAAGAGGCTGCTCGTTTGTACGACAGGGCTGCTTTTGTCTGTGGACGGGAACCGAATTTCGAACTACCCGAGGAGGAGAAGCAAGAACTCCAAAAGTTCAAATGGGAAGACTTCTTAGAAATGACTCGCCACGCAATTACGAACAAAAAGCATAAGAGACTTAGCACAGGATCGCCAAAAAAGCTCGGTGCTTCTTCACTACAAATCGACAACACCGACTTCAAGCACGGGTTCACCAGCTTTCCCGTGCGGGAAGACATTGACCCTTCCATCACTTGA

Coding sequence (CDS)

ATGCTTTTGGACTCCAATCATGATGCTGTCACGATTGATTTTATCAGGAAAAGTTCATTCGTTGCTCCACTTCCCAAGTTTTCAGATCATGGGACCGCTCCCGAAAATCCTAGTCCGAGTAACAAACTTCTCACTGTGCATCCCATGTCTTCTGATAATGTTAGCATCACAGATAGGACCTCTGTTGTAAATATGGAATCCAGTTTTGCAAATGCATTGGATTTGGCCTCGCTGAAAGAACAGTCGAATCAGCCTACTTCAGGGCATCCGTTAAAACATAGAAAGAGACATAGGAGAAAAAATTCTCATAATGAAGAACTATCAATCATGAGGGGCGTCTACTTTAAGAACATGAAATGGCAGGCTGCGATTAAGGTCGACAAGAAACAGATACATTTGGGAACATTTGGTTCACAAGAAGAGGCTGCTCGTTTGTACGACAGGGCTGCTTTTGTCTGTGGACGGGAACCGAATTTCGAACTACCCGAGGAGGAGAAGCAAGAACTCCAAAAGTTCAAATGGGAAGACTTCTTAGAAATGACTCGCCACGCAATTACGAACAAAAAGCATAAGAGACTTAGCACAGGATCGCCAAAAAAGCTCGGTGCTTCTTCACTACAAATCGACAACACCGACTTCAAGCACGGGTTCACCAGCTTTCCCGTGCGGGAAGACATTGACCCTTCCATCACTTGA

Protein sequence

MLLDSNHDAVTIDFIRKSSFVAPLPKFSDHGTAPENPSPSNKLLTVHPMSSDNVSITDRTSVVNMESSFANALDLASLKEQSNQPTSGHPLKHRKRHRRKNSHNEELSIMRGVYFKNMKWQAAIKVDKKQIHLGTFGSQEEAARLYDRAAFVCGREPNFELPEEEKQELQKFKWEDFLEMTRHAITNKKHKRLSTGSPKKLGASSLQIDNTDFKHGFTSFPVREDIDPSIT

Homology

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BLAST of Sed0026975 vs. NCBI nr
Match: XP_022159021.1 (ethylene-responsive transcription factor-like protein At4g13040 isoform X1 [Momordica charantia])

HSP 1 Score: 373.6 bits (958), Expect = 1.2e-99
Identity = 186/219 (84.93%), Postives = 199/219 (90.87%), Query Frame = 0


Query: 13  DFIRKSSFVAPLPKFSDHGTAPENPSPSNKLLTVHPMSSDNVSITDRTSVVNMESSFANA 72
           DF  KSSFVAPLPKFSD+GTAPENPSPSNKL+TVHPMSSD+V++TDR+SVVNME +FA+A
Sbjct: 19  DFSGKSSFVAPLPKFSDNGTAPENPSPSNKLVTVHPMSSDDVNLTDRSSVVNMEPNFASA 78

Query: 73  LDLASLKEQSNQPTSGHPLKHRKRHRRKNSHNEELSIMRGVYFKNMKWQAAIKVDKKQIH 132
            DL S KEQSNQP SGHPLKHRKRHRRKNSHN+EL+IMRGVYFKNMKWQAAIKVDKKQIH
Sbjct: 79  SDLTSQKEQSNQPASGHPLKHRKRHRRKNSHNQELTIMRGVYFKNMKWQAAIKVDKKQIH 138

Query: 133 LGTFGSQEEAARLYDRAAFVCGREPNFELPEEEKQELQKFKWEDFLEMTRHAITNKKHKR 192
           LGTFGSQEEAA LYDRAAFVCGREPNFELPE+EKQELQKFKWEDFL MTRHAITNKKHKR
Sbjct: 139 LGTFGSQEEAAHLYDRAAFVCGREPNFELPEDEKQELQKFKWEDFLAMTRHAITNKKHKR 198

Query: 193 LSTGSPKKLGASSLQIDNTDFKHGFTSFPVREDIDPSIT 232
           L TGSPKK GASSL ID TD+KH F  FP  ED + SIT
Sbjct: 199 LGTGSPKKPGASSLPIDTTDYKHRFNGFPSPEDTNSSIT 237

[Close]

BLAST of Sed0026975 vs. NCBI nr
Match: XP_022159022.1 (ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Momordica charantia])

HSP 1 Score: 370.2 bits (949), Expect = 1.3e-98
Identity = 184/215 (85.58%), Postives = 197/215 (91.63%), Query Frame = 0


Query: 17  KSSFVAPLPKFSDHGTAPENPSPSNKLLTVHPMSSDNVSITDRTSVVNMESSFANALDLA 76
           KSSFVAPLPKFSD+GTAPENPSPSNKL+TVHPMSSD+V++TDR+SVVNME +FA+A DL 
Sbjct: 16  KSSFVAPLPKFSDNGTAPENPSPSNKLVTVHPMSSDDVNLTDRSSVVNMEPNFASASDLT 75

Query: 77  SLKEQSNQPTSGHPLKHRKRHRRKNSHNEELSIMRGVYFKNMKWQAAIKVDKKQIHLGTF 136
           S KEQSNQP SGHPLKHRKRHRRKNSHN+EL+IMRGVYFKNMKWQAAIKVDKKQIHLGTF
Sbjct: 76  SQKEQSNQPASGHPLKHRKRHRRKNSHNQELTIMRGVYFKNMKWQAAIKVDKKQIHLGTF 135

Query: 137 GSQEEAARLYDRAAFVCGREPNFELPEEEKQELQKFKWEDFLEMTRHAITNKKHKRLSTG 196
           GSQEEAA LYDRAAFVCGREPNFELPE+EKQELQKFKWEDFL MTRHAITNKKHKRL TG
Sbjct: 136 GSQEEAAHLYDRAAFVCGREPNFELPEDEKQELQKFKWEDFLAMTRHAITNKKHKRLGTG 195

Query: 197 SPKKLGASSLQIDNTDFKHGFTSFPVREDIDPSIT 232
           SPKK GASSL ID TD+KH F  FP  ED + SIT
Sbjct: 196 SPKKPGASSLPIDTTDYKHRFNGFPSPEDTNSSIT 230

[Close]

BLAST of Sed0026975 vs. NCBI nr
Match: XP_038899850.1 (ethylene-responsive transcription factor-like protein At4g13040 isoform X1 [Benincasa hispida] >XP_038899851.1 ethylene-responsive transcription factor-like protein At4g13040 isoform X1 [Benincasa hispida] >XP_038899852.1 ethylene-responsive transcription factor-like protein At4g13040 isoform X1 [Benincasa hispida])

HSP 1 Score: 364.0 bits (933), Expect = 9.6e-97
Identity = 184/216 (85.19%), Postives = 196/216 (90.74%), Query Frame = 0


Query: 13  DFIRKSSFVAPLPKFSDHGTAPENPSPSNKLLTVHPMSSDNVSITDRTSVVNMESSFANA 72
           D   KSSFV PLPKFS++GT PENPSPSNKL+T+HP SSD+V+ITDR+S+ NMESSFANA
Sbjct: 15  DISGKSSFVTPLPKFSENGTTPENPSPSNKLVTLHPKSSDDVNITDRSSIENMESSFANA 74

Query: 73  LDLASLKEQSNQPTSGHPLKHRKRHRRKNSHNEELSIMRGVYFKNMKWQAAIKVDKKQIH 132
           LD  SL EQSNQP SGHPLKHRKRHRRKNSHN+ELSIMRGVYFKNMKWQAAIKVDKKQIH
Sbjct: 75  LDWTSLNEQSNQPISGHPLKHRKRHRRKNSHNQELSIMRGVYFKNMKWQAAIKVDKKQIH 134

Query: 133 LGTFGSQEEAARLYDRAAFVCGREPNFELPEEEKQELQKFKWEDFLEMTRHAITNKKHKR 192
           LGTFGSQEEAARLYDRAA+VCGREPNFEL EEEKQELQKFKWEDFL MTRHAITNKKHKR
Sbjct: 135 LGTFGSQEEAARLYDRAAYVCGREPNFELSEEEKQELQKFKWEDFLAMTRHAITNKKHKR 194

Query: 193 LSTG-SPKKLGASSLQIDNTDFKHGFTSFPVREDID 228
           L TG SPKKLGASSLQIDNT+FKH F   PV EDI+
Sbjct: 195 LGTGSSPKKLGASSLQIDNTEFKHRFNEPPVPEDIN 230

[Close]

BLAST of Sed0026975 vs. NCBI nr
Match: XP_038899853.1 (ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Benincasa hispida] >XP_038899854.1 ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Benincasa hispida] >XP_038899855.1 ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Benincasa hispida])

HSP 1 Score: 363.2 bits (931), Expect = 1.6e-96
Identity = 183/212 (86.32%), Postives = 195/212 (91.98%), Query Frame = 0


Query: 17  KSSFVAPLPKFSDHGTAPENPSPSNKLLTVHPMSSDNVSITDRTSVVNMESSFANALDLA 76
           KSSFV PLPKFS++GT PENPSPSNKL+T+HP SSD+V+ITDR+S+ NMESSFANALD  
Sbjct: 16  KSSFVTPLPKFSENGTTPENPSPSNKLVTLHPKSSDDVNITDRSSIENMESSFANALDWT 75

Query: 77  SLKEQSNQPTSGHPLKHRKRHRRKNSHNEELSIMRGVYFKNMKWQAAIKVDKKQIHLGTF 136
           SL EQSNQP SGHPLKHRKRHRRKNSHN+ELSIMRGVYFKNMKWQAAIKVDKKQIHLGTF
Sbjct: 76  SLNEQSNQPISGHPLKHRKRHRRKNSHNQELSIMRGVYFKNMKWQAAIKVDKKQIHLGTF 135

Query: 137 GSQEEAARLYDRAAFVCGREPNFELPEEEKQELQKFKWEDFLEMTRHAITNKKHKRLSTG 196
           GSQEEAARLYDRAA+VCGREPNFEL EEEKQELQKFKWEDFL MTRHAITNKKHKRL TG
Sbjct: 136 GSQEEAARLYDRAAYVCGREPNFELSEEEKQELQKFKWEDFLAMTRHAITNKKHKRLGTG 195

Query: 197 -SPKKLGASSLQIDNTDFKHGFTSFPVREDID 228
            SPKKLGASSLQIDNT+FKH F   PV EDI+
Sbjct: 196 SSPKKLGASSLQIDNTEFKHRFNEPPVPEDIN 227

[Close]

BLAST of Sed0026975 vs. NCBI nr
Match: XP_023004160.1 (ethylene-responsive transcription factor-like protein At4g13040 [Cucurbita maxima] >XP_023004161.1 ethylene-responsive transcription factor-like protein At4g13040 [Cucurbita maxima] >XP_023004162.1 ethylene-responsive transcription factor-like protein At4g13040 [Cucurbita maxima])

HSP 1 Score: 357.5 bits (916), Expect = 8.9e-95
Identity = 182/215 (84.65%), Postives = 193/215 (89.77%), Query Frame = 0


Query: 17  KSSFVAPLPKFSDHGTAPENPSPSNKLLTVHPMSSDNVSITDRTSVVNMESSFANALDLA 76
           KSS V  LPKFS++G APENPSPS+K +TVHP SSD+V ITDR+SVVNMESSFANALDL 
Sbjct: 16  KSSSVTSLPKFSENGIAPENPSPSSKFVTVHPTSSDDVHITDRSSVVNMESSFANALDLT 75

Query: 77  SLKEQSNQPTSGHPLKHRKRHRRKNSHNEELSIMRGVYFKNMKWQAAIKVDKKQIHLGTF 136
           SLKEQSNQP SGHPLKHRKRHRRKNSHN+ELSIMRGVYFKNMKWQAAIKVDKKQIHLGTF
Sbjct: 76  SLKEQSNQPISGHPLKHRKRHRRKNSHNQELSIMRGVYFKNMKWQAAIKVDKKQIHLGTF 135

Query: 137 GSQEEAARLYDRAAFVCGREPNFELPEEEKQELQKFKWEDFLEMTRHAITNKKHKRLSTG 196
           GSQEEAA LYDRAAFVCGREPNFEL EEEKQELQKFKWEDFL MTRHAITNKKHKRL  G
Sbjct: 136 GSQEEAAHLYDRAAFVCGREPNFELSEEEKQELQKFKWEDFLAMTRHAITNKKHKRLIAG 195

Query: 197 SPKKLGASSLQIDNTDFKHGFTSFPVREDIDPSIT 232
           SP K GASS  +DNT+FKH F  FPVRED++ SIT
Sbjct: 196 SPTKPGASS--VDNTEFKHRFIGFPVREDVNRSIT 228

[Close]

BLAST of Sed0026975 vs. ExPASy Swiss-Prot
Match: Q56XP9 (Ethylene-responsive transcription factor-like protein At4g13040 OS=Arabidopsis thaliana OX=3702 GN=At4g13040 PE=2 SV=2)

HSP 1 Score: 156.4 bits (394), Expect = 4.0e-37
Identity = 92/195 (47.18%), Postives = 121/195 (62.05%), Query Frame = 0


Query: 12  IDFIRKSSFVAPLPKFSDHGTAPENPSPSNKLLT--VHPMSSDNVSITDRTSVVNMESSF 71
           + F+     +  +P  + +  A  NP P+  + T  V   + +  S   R+  ++  S +
Sbjct: 23  LPFLTAEEMITGIP--NPNARAAYNPGPAETVTTVIVEKKAIEERSRRTRSKHMHFRSDY 82

Query: 72  ANALDLASLKEQSNQPTSGHPLKHRKRHRRKNSHNEELSIMRGVYFKNMKWQAAIKVDKK 131
           +   D++ +   S  P    P K RK+HRRK  HN+E  +MRGVY+KNMKWQAAIKV+KK
Sbjct: 83  S---DISPVNSDSISP-KYQPPKRRKQHRRKRVHNQEPCLMRGVYYKNMKWQAAIKVEKK 142

Query: 132 QIHLGTFGSQEEAARLYDRAAFVCGREPNFELPEEEKQELQKFKWEDFLEMTRHAITNKK 191
           QIHLGTF SQEEAARLYDRAAF+CGREPNFEL EE  +EL++  WE+FL  TR  ITNKK
Sbjct: 143 QIHLGTFSSQEEAARLYDRAAFMCGREPNFELSEEVIRELKQQSWEEFLNCTRRTITNKK 202

Query: 192 HKRLSTGSPKKLGAS 205
            K        K+ AS
Sbjct: 203 PKSRIEHEDTKINAS 211

[Close]

BLAST of Sed0026975 vs. ExPASy Swiss-Prot
Match: Q6PQQ4 (AP2-like ethylene-responsive transcription factor BBM OS=Arabidopsis thaliana OX=3702 GN=BBM PE=2 SV=2)

HSP 1 Score: 46.6 bits (109), Expect = 4.4e-04
Identity = 42/106 (39.62%), Postives = 53/106 (50.00%), Query Frame = 0


Query: 66  ESSFANALDLASLKEQSNQPTSGHPL----------KHRKRH------RRKNS-HNEELS 125
           E   A A DLA+LK      T+  PL          KH  R       RRK+S  +   S
Sbjct: 252 EEKAARAYDLAALKYWGTTTTTNFPLSEYEKEVEEMKHMTRQEYVASLRRKSSGFSRGAS 311

Query: 126 IMRGV--YFKNMKWQAAI--KVDKKQIHLGTFGSQEEAARLYDRAA 151
           I RGV  + ++ +WQA I      K ++LGTFG+QEEAA  YD AA
Sbjct: 312 IYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAA 357

[Close]

BLAST of Sed0026975 vs. ExPASy Swiss-Prot
Match: Q8L3U3 (AP2-like ethylene-responsive transcription factor BBM1 OS=Brassica napus OX=3708 GN=BBM1 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 7.6e-04
Identity = 41/106 (38.68%), Postives = 53/106 (50.00%), Query Frame = 0


Query: 66  ESSFANALDLASLKEQSNQPTSGHP----------LKHRKRH------RRKNS-HNEELS 125
           E   A A DLA+LK      T+  P          +KH  R       RRK+S  +   S
Sbjct: 252 EEKAARAYDLAALKYWGTTTTTNFPMSEYEKEVEEMKHMTRQEYVASLRRKSSGFSRGAS 311

Query: 126 IMRGV--YFKNMKWQAAI--KVDKKQIHLGTFGSQEEAARLYDRAA 151
           I RGV  + ++ +WQA I      K ++LGTFG+QEEAA  YD AA
Sbjct: 312 IYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAA 357

[Close]

BLAST of Sed0026975 vs. ExPASy Swiss-Prot
Match: Q8LSN2 (AP2-like ethylene-responsive transcription factor BBM2 OS=Brassica napus OX=3708 GN=BBM2 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 7.6e-04
Identity = 41/106 (38.68%), Postives = 53/106 (50.00%), Query Frame = 0


Query: 66  ESSFANALDLASLKEQSNQPTSGHP----------LKHRKRH------RRKNS-HNEELS 125
           E   A A DLA+LK      T+  P          +KH  R       RRK+S  +   S
Sbjct: 252 EEKAARAYDLAALKYWGTTTTTNFPMSEYEKEIEEMKHMTRQEYVASLRRKSSGFSRGAS 311

Query: 126 IMRGV--YFKNMKWQAAI--KVDKKQIHLGTFGSQEEAARLYDRAA 151
           I RGV  + ++ +WQA I      K ++LGTFG+QEEAA  YD AA
Sbjct: 312 IYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAA 357

[Close]

BLAST of Sed0026975 vs. ExPASy TrEMBL
Match: A0A6J1E2N6 (ethylene-responsive transcription factor-like protein At4g13040 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111025467 PE=4 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 5.8e-100
Identity = 186/219 (84.93%), Postives = 199/219 (90.87%), Query Frame = 0


Query: 13  DFIRKSSFVAPLPKFSDHGTAPENPSPSNKLLTVHPMSSDNVSITDRTSVVNMESSFANA 72
           DF  KSSFVAPLPKFSD+GTAPENPSPSNKL+TVHPMSSD+V++TDR+SVVNME +FA+A
Sbjct: 19  DFSGKSSFVAPLPKFSDNGTAPENPSPSNKLVTVHPMSSDDVNLTDRSSVVNMEPNFASA 78

Query: 73  LDLASLKEQSNQPTSGHPLKHRKRHRRKNSHNEELSIMRGVYFKNMKWQAAIKVDKKQIH 132
            DL S KEQSNQP SGHPLKHRKRHRRKNSHN+EL+IMRGVYFKNMKWQAAIKVDKKQIH
Sbjct: 79  SDLTSQKEQSNQPASGHPLKHRKRHRRKNSHNQELTIMRGVYFKNMKWQAAIKVDKKQIH 138

Query: 133 LGTFGSQEEAARLYDRAAFVCGREPNFELPEEEKQELQKFKWEDFLEMTRHAITNKKHKR 192
           LGTFGSQEEAA LYDRAAFVCGREPNFELPE+EKQELQKFKWEDFL MTRHAITNKKHKR
Sbjct: 139 LGTFGSQEEAAHLYDRAAFVCGREPNFELPEDEKQELQKFKWEDFLAMTRHAITNKKHKR 198

Query: 193 LSTGSPKKLGASSLQIDNTDFKHGFTSFPVREDIDPSIT 232
           L TGSPKK GASSL ID TD+KH F  FP  ED + SIT
Sbjct: 199 LGTGSPKKPGASSLPIDTTDYKHRFNGFPSPEDTNSSIT 237

[Close]

BLAST of Sed0026975 vs. ExPASy TrEMBL
Match: A0A6J1DYP4 (ethylene-responsive transcription factor-like protein At4g13040 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111025467 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 6.5e-99
Identity = 184/215 (85.58%), Postives = 197/215 (91.63%), Query Frame = 0


Query: 17  KSSFVAPLPKFSDHGTAPENPSPSNKLLTVHPMSSDNVSITDRTSVVNMESSFANALDLA 76
           KSSFVAPLPKFSD+GTAPENPSPSNKL+TVHPMSSD+V++TDR+SVVNME +FA+A DL 
Sbjct: 16  KSSFVAPLPKFSDNGTAPENPSPSNKLVTVHPMSSDDVNLTDRSSVVNMEPNFASASDLT 75

Query: 77  SLKEQSNQPTSGHPLKHRKRHRRKNSHNEELSIMRGVYFKNMKWQAAIKVDKKQIHLGTF 136
           S KEQSNQP SGHPLKHRKRHRRKNSHN+EL+IMRGVYFKNMKWQAAIKVDKKQIHLGTF
Sbjct: 76  SQKEQSNQPASGHPLKHRKRHRRKNSHNQELTIMRGVYFKNMKWQAAIKVDKKQIHLGTF 135

Query: 137 GSQEEAARLYDRAAFVCGREPNFELPEEEKQELQKFKWEDFLEMTRHAITNKKHKRLSTG 196
           GSQEEAA LYDRAAFVCGREPNFELPE+EKQELQKFKWEDFL MTRHAITNKKHKRL TG
Sbjct: 136 GSQEEAAHLYDRAAFVCGREPNFELPEDEKQELQKFKWEDFLAMTRHAITNKKHKRLGTG 195

Query: 197 SPKKLGASSLQIDNTDFKHGFTSFPVREDIDPSIT 232
           SPKK GASSL ID TD+KH F  FP  ED + SIT
Sbjct: 196 SPKKPGASSLPIDTTDYKHRFNGFPSPEDTNSSIT 230

[Close]

BLAST of Sed0026975 vs. ExPASy TrEMBL
Match: A0A6J1KRB7 (ethylene-responsive transcription factor-like protein At4g13040 OS=Cucurbita maxima OX=3661 GN=LOC111497571 PE=4 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 4.3e-95
Identity = 182/215 (84.65%), Postives = 193/215 (89.77%), Query Frame = 0


Query: 17  KSSFVAPLPKFSDHGTAPENPSPSNKLLTVHPMSSDNVSITDRTSVVNMESSFANALDLA 76
           KSS V  LPKFS++G APENPSPS+K +TVHP SSD+V ITDR+SVVNMESSFANALDL 
Sbjct: 16  KSSSVTSLPKFSENGIAPENPSPSSKFVTVHPTSSDDVHITDRSSVVNMESSFANALDLT 75

Query: 77  SLKEQSNQPTSGHPLKHRKRHRRKNSHNEELSIMRGVYFKNMKWQAAIKVDKKQIHLGTF 136
           SLKEQSNQP SGHPLKHRKRHRRKNSHN+ELSIMRGVYFKNMKWQAAIKVDKKQIHLGTF
Sbjct: 76  SLKEQSNQPISGHPLKHRKRHRRKNSHNQELSIMRGVYFKNMKWQAAIKVDKKQIHLGTF 135

Query: 137 GSQEEAARLYDRAAFVCGREPNFELPEEEKQELQKFKWEDFLEMTRHAITNKKHKRLSTG 196
           GSQEEAA LYDRAAFVCGREPNFEL EEEKQELQKFKWEDFL MTRHAITNKKHKRL  G
Sbjct: 136 GSQEEAAHLYDRAAFVCGREPNFELSEEEKQELQKFKWEDFLAMTRHAITNKKHKRLIAG 195

Query: 197 SPKKLGASSLQIDNTDFKHGFTSFPVREDIDPSIT 232
           SP K GASS  +DNT+FKH F  FPVRED++ SIT
Sbjct: 196 SPTKPGASS--VDNTEFKHRFIGFPVREDVNRSIT 228

[Close]

BLAST of Sed0026975 vs. ExPASy TrEMBL
Match: A0A6J1H7M5 (ethylene-responsive transcription factor-like protein At4g13040 OS=Cucurbita moschata OX=3662 GN=LOC111460898 PE=4 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.6e-94
Identity = 182/215 (84.65%), Postives = 194/215 (90.23%), Query Frame = 0


Query: 17  KSSFVAPLPKFSDHGTAPENPSPSNKLLTVHPMSSDNVSITDRTSVVNMESSFANALDLA 76
           KSS VA LPKFS++G A ENPSPS+K +TVHP SSD+V ITDR+SVVNMESSFANALDL 
Sbjct: 16  KSSSVASLPKFSENGIALENPSPSSKFVTVHPTSSDDVHITDRSSVVNMESSFANALDLT 75

Query: 77  SLKEQSNQPTSGHPLKHRKRHRRKNSHNEELSIMRGVYFKNMKWQAAIKVDKKQIHLGTF 136
           SLKEQSNQP SGHPLKHRKRHRRKNSHN+ELSIMRGVYFKNMKWQAAIKVDKKQIHLGTF
Sbjct: 76  SLKEQSNQPISGHPLKHRKRHRRKNSHNQELSIMRGVYFKNMKWQAAIKVDKKQIHLGTF 135

Query: 137 GSQEEAARLYDRAAFVCGREPNFELPEEEKQELQKFKWEDFLEMTRHAITNKKHKRLSTG 196
           GSQEEAA LYDRAAFVCGREPNFEL EEEKQELQKFKWEDFL MTRHAITNKKHKRLS G
Sbjct: 136 GSQEEAAHLYDRAAFVCGREPNFELSEEEKQELQKFKWEDFLAMTRHAITNKKHKRLSAG 195

Query: 197 SPKKLGASSLQIDNTDFKHGFTSFPVREDIDPSIT 232
           SP K GASS  +D+T+FKH F  FPVRED++ SIT
Sbjct: 196 SPTKPGASS--VDDTEFKHRFIGFPVREDVNRSIT 228

[Close]

BLAST of Sed0026975 vs. ExPASy TrEMBL
Match: A0A5D3CIE2 (Ethylene-responsive transcription factor-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold263G00460 PE=4 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 1.4e-93
Identity = 178/214 (83.18%), Postives = 192/214 (89.72%), Query Frame = 0


Query: 17  KSSFVAPLPKFSDHGTAPENPSPSNKLLTVHPMSSDNVSITDRTSVVNMESSFANALDLA 76
           KSSFVAPLPKFSDH TAPENPSPSNKL+T+HP SSD+V+I DR+S+VNMESSF NAL+ +
Sbjct: 16  KSSFVAPLPKFSDHETAPENPSPSNKLITLHPKSSDDVNIKDRSSIVNMESSFTNALEWS 75

Query: 77  SLKEQSNQPTSGHPLKHRKRHRRKNSHNEELSIMRGVYFKNMKWQAAIKVDKKQIHLGTF 136
           SL EQSNQP SGHPLKHRKRHRRKNSHN+ELSIMRGVYFKNMKWQAAIKVDKKQIHLGTF
Sbjct: 76  SLSEQSNQPISGHPLKHRKRHRRKNSHNQELSIMRGVYFKNMKWQAAIKVDKKQIHLGTF 135

Query: 137 GSQEEAARLYDRAAFVCGREPNFELPEEEKQELQKFKWEDFLEMTRHAITNKKHKRLSTG 196
           GSQEEAA LYDRAAFVCGREPNFEL +EEKQELQKFKWEDFL MTRHAITNKKHKRLS  
Sbjct: 136 GSQEEAAHLYDRAAFVCGREPNFELSDEEKQELQKFKWEDFLAMTRHAITNKKHKRLSVN 195

Query: 197 ---SPKKLGASSLQIDNTDFKHGFTSFPVREDID 228
              SPKKL ASSLQI+NT+ KH F   P+ EDI+
Sbjct: 196 AGTSPKKLEASSLQIENTELKHRFNESPLPEDIN 229

[Close]

BLAST of Sed0026975 vs. TAIR 10
Match: AT4G13040.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 156.4 bits (394), Expect = 2.8e-38
Identity = 92/195 (47.18%), Postives = 121/195 (62.05%), Query Frame = 0


Query: 12  IDFIRKSSFVAPLPKFSDHGTAPENPSPSNKLLT--VHPMSSDNVSITDRTSVVNMESSF 71
           + F+     +  +P  + +  A  NP P+  + T  V   + +  S   R+  ++  S +
Sbjct: 23  LPFLTAEEMITGIP--NPNARAAYNPGPAETVTTVIVEKKAIEERSRRTRSKHMHFRSDY 82

Query: 72  ANALDLASLKEQSNQPTSGHPLKHRKRHRRKNSHNEELSIMRGVYFKNMKWQAAIKVDKK 131
           +   D++ +   S  P    P K RK+HRRK  HN+E  +MRGVY+KNMKWQAAIKV+KK
Sbjct: 83  S---DISPVNSDSISP-KYQPPKRRKQHRRKRVHNQEPCLMRGVYYKNMKWQAAIKVEKK 142

Query: 132 QIHLGTFGSQEEAARLYDRAAFVCGREPNFELPEEEKQELQKFKWEDFLEMTRHAITNKK 191
           QIHLGTF SQEEAARLYDRAAF+CGREPNFEL EE  +EL++  WE+FL  TR  ITNKK
Sbjct: 143 QIHLGTFSSQEEAARLYDRAAFMCGREPNFELSEEVIRELKQQSWEEFLNCTRRTITNKK 202

Query: 192 HKRLSTGSPKKLGAS 205
            K        K+ AS
Sbjct: 203 PKSRIEHEDTKINAS 211

[Close]

BLAST of Sed0026975 vs. TAIR 10
Match: AT4G13040.3 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 156.4 bits (394), Expect = 2.8e-38
Identity = 92/195 (47.18%), Postives = 121/195 (62.05%), Query Frame = 0


Query: 12  IDFIRKSSFVAPLPKFSDHGTAPENPSPSNKLLT--VHPMSSDNVSITDRTSVVNMESSF 71
           + F+     +  +P  + +  A  NP P+  + T  V   + +  S   R+  ++  S +
Sbjct: 43  LPFLTAEEMITGIP--NPNARAAYNPGPAETVTTVIVEKKAIEERSRRTRSKHMHFRSDY 102

Query: 72  ANALDLASLKEQSNQPTSGHPLKHRKRHRRKNSHNEELSIMRGVYFKNMKWQAAIKVDKK 131
           +   D++ +   S  P    P K RK+HRRK  HN+E  +MRGVY+KNMKWQAAIKV+KK
Sbjct: 103 S---DISPVNSDSISP-KYQPPKRRKQHRRKRVHNQEPCLMRGVYYKNMKWQAAIKVEKK 162

Query: 132 QIHLGTFGSQEEAARLYDRAAFVCGREPNFELPEEEKQELQKFKWEDFLEMTRHAITNKK 191
           QIHLGTF SQEEAARLYDRAAF+CGREPNFEL EE  +EL++  WE+FL  TR  ITNKK
Sbjct: 163 QIHLGTFSSQEEAARLYDRAAFMCGREPNFELSEEVIRELKQQSWEEFLNCTRRTITNKK 222

Query: 192 HKRLSTGSPKKLGAS 205
            K        K+ AS
Sbjct: 223 PKSRIEHEDTKINAS 231

[Close]

BLAST of Sed0026975 vs. TAIR 10
Match: AT4G13040.2 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 155.2 bits (391), Expect = 6.3e-38
Identity = 79/118 (66.95%), Postives = 90/118 (76.27%), Query Frame = 0


Query: 87  SGHPLKHRKRHRRKNSHNEELSIMRGVYFKNMKWQAAIKVDKKQIHLGTFGSQEEAARLY 146
           S  P K RK+HRRK  HN+E  +MRGVY+KNMKWQAAIKV+KKQIHLGTF SQEEAARLY
Sbjct: 38  SDQPPKRRKQHRRKRVHNQEPCLMRGVYYKNMKWQAAIKVEKKQIHLGTFSSQEEAARLY 97

Query: 147 DRAAFVCGREPNFELPEEEKQELQKFKWEDFLEMTRHAITNKKHKRLSTGSPKKLGAS 205
           DRAAF+CGREPNFEL EE  +EL++  WE+FL  TR  ITNKK K        K+ AS
Sbjct: 98  DRAAFMCGREPNFELSEEVIRELKQQSWEEFLNCTRRTITNKKPKSRIEHEDTKINAS 155

[Close]

BLAST of Sed0026975 vs. TAIR 10
Match: AT5G17430.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 46.6 bits (109), Expect = 3.1e-05
Identity = 42/106 (39.62%), Postives = 53/106 (50.00%), Query Frame = 0


Query: 66  ESSFANALDLASLKEQSNQPTSGHPL----------KHRKRH------RRKNS-HNEELS 125
           E   A A DLA+LK      T+  PL          KH  R       RRK+S  +   S
Sbjct: 252 EEKAARAYDLAALKYWGTTTTTNFPLSEYEKEVEEMKHMTRQEYVASLRRKSSGFSRGAS 311

Query: 126 IMRGV--YFKNMKWQAAI--KVDKKQIHLGTFGSQEEAARLYDRAA 151
           I RGV  + ++ +WQA I      K ++LGTFG+QEEAA  YD AA
Sbjct: 312 IYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAA 357

The following BLAST results are available for this feature:

BLAST of Sed0026975 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159021.1	1.2e-99	84.93	ethylene-responsive transcription factor-like protein At4g13040 isoform X1 [Momo...	[more]
XP_022159022.1	1.3e-98	85.58	ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Momo...	[more]
XP_038899850.1	9.6e-97	85.19	ethylene-responsive transcription factor-like protein At4g13040 isoform X1 [Beni...	[more]
XP_038899853.1	1.6e-96	86.32	ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Beni...	[more]
XP_023004160.1	8.9e-95	84.65	ethylene-responsive transcription factor-like protein At4g13040 [Cucurbita maxim...	[more]

BLAST of Sed0026975 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q56XP9	4.0e-37	47.18	Ethylene-responsive transcription factor-like protein At4g13040 OS=Arabidopsis t...	[more]
Q6PQQ4	4.4e-04	39.62	AP2-like ethylene-responsive transcription factor BBM OS=Arabidopsis thaliana OX...	[more]
Q8L3U3	7.6e-04	38.68	AP2-like ethylene-responsive transcription factor BBM1 OS=Brassica napus OX=3708...	[more]
Q8LSN2	7.6e-04	38.68	AP2-like ethylene-responsive transcription factor BBM2 OS=Brassica napus OX=3708...	[more]

BLAST of Sed0026975 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E2N6	5.8e-100	84.93	ethylene-responsive transcription factor-like protein At4g13040 isoform X1 OS=Mo...	[more]
A0A6J1DYP4	6.5e-99	85.58	ethylene-responsive transcription factor-like protein At4g13040 isoform X2 OS=Mo...	[more]
A0A6J1KRB7	4.3e-95	84.65	ethylene-responsive transcription factor-like protein At4g13040 OS=Cucurbita max...	[more]
A0A6J1H7M5	1.6e-94	84.65	ethylene-responsive transcription factor-like protein At4g13040 OS=Cucurbita mos...	[more]
A0A5D3CIE2	1.4e-93	83.18	Ethylene-responsive transcription factor-like protein OS=Cucumis melo var. makuw...	[more]

BLAST of Sed0026975 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G13040.1	2.8e-38	47.18	Integrase-type DNA-binding superfamily protein	[more]
AT4G13040.3	2.8e-38	47.18	Integrase-type DNA-binding superfamily protein	[more]
AT4G13040.2	6.3e-38	66.95	Integrase-type DNA-binding superfamily protein	[more]
AT5G17430.1	3.1e-05	39.62	Integrase-type DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 109..168 e-value: 4.9E-5 score: 30.4
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 111..151 e-value: 2.1E-7 score: 31.1
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 92..151 score: 9.137006
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 111..161 e-value: 2.1E-10 score: 42.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..105
None	No IPR available	PANTHER	PTHR32467	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	coord: 17..215
None	No IPR available	PANTHER	PTHR32467:SF4	OS02G0499000 PROTEIN	coord: 17..215
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 108..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0026975.1	Sed0026975.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050790	regulation of catalytic activity
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0005094	Rho GDP-dissociation inhibitor activity