Sed0026966 (gene) Chayote v1

Overview


Name	Sed0026966
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Actin
Location	LG14: 4811076 .. 4812137 (+)
RNA-Seq Expression	Sed0026966
Synteny	Sed0026966

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATTTTGACCGAGCGTGGTTATTCATTCACTACCTCAGCTGAGCGTGAAATTGTGAGAGATATGAAGGAAAAGTTGGCGTACATTGCCCTTGACTATGAACAAGAATTGGAAACCTCAAAGACCAGCTCTTCAGTTGAGAAGAGTTATGAGTTGCCTGATGGTCAGGTGATCACCATCGGCGCTGAGCGATTCCGATGCCCGAAAGTCCTTTTCCAACCATCCATGATCGGTATGGAAGCTGCTGGTATTCATGAGACGACATACAATTCCATCATGAAATGTGATGTTGACATCAGGAAAGATTTGTATGGAAACATGTGCTCAGTGGTGGTTCAACCATGTTCACTGGCATTGGTGATAGAATGAGCAAGGAGATCACGGCGTTGGCCCCGAGCAACATGAAGATTAAGGTCGTTGCGCCGCCTGAAAGGAAGTACAGTGTGTGGATTGGAGGTTCCATCTTGGCATCCTTGAGCACTTTCCAGTAGGTAACTTATTTTCAAAGCAAATTCTTCCTTATCACAAAGCAAACTATGGTTGATTTAGAGTCCTCTAACTTGATATTTTGATTGCTCAGATGTGGATTGCCAAGGCTGAGTATGATGAGTCTGGCCCTTCAATTGTCCACAGGAAATGCTTCTGATCCTGCAAACACGGGTCGATTTCGGTACTGTTTTACCTGAGAATTAAAGAAATTGTTGCTTGAATTTCCCTCTTTTGTTCAACTCTGCTTTTTCAAAAAAAAAAAGTACCTTCTTTTATCATATTGTATTGTTAACCTTTAATGGAAGGAGTGATAGCTGGACATTTTGTCATTCATTCAGTTTTCTCTAGTAAGCCTTTTGGTACTAAGGCAATTATGTTTAATTTCATTTCTTATTCTTCTGAATATATCAGTGAGGAAATTTTTTAATAATTAATTATCCTTTTTTTAAAAACATGTTGTCTTTAAGAACGACCCTAGCTGTTTTCTCCAAAATGCTGGTGAATGCATTTGGGCTGCATAGAATAATTTTGACCTCAGTTTTGCTGCTCAAGGGGAAGAGTTCTTTTTAG

mRNA sequence

ATGAAAATTTTGACCGAGCGTGGTTATTCATTCACTACCTCAGCTGAGCGTGAAATTGTGAGAGATATGAAGGAAAAGTTGGCGTACATTGCCCTTGACTATGAACAAGAATTGGAAACCTCAAAGACCAGCTCTTCAGTTGAGAAGAGTTATGAGTTGCCTGATGGTCAGGTGATCACCATCGGCGCTGAGCGATTCCGATGCCCGAAAGTCCTTTTCCAACCATCCATGATCGGTATGGAAGCTGCTGGTATTCATGAGACGACATACAATTCCATCATGAAATGTGATGTTGACATCAGGAAAGATTTGTATGGAAACATTGGTGGTTCAACCATGTTCACTGGCATTGGTGATAGAATGAGCAAGGAGATCACGGCGTTGGCCCCGAGCAACATGAAGATTAAGGTCGTTGCGCCGCCTGAAAGGAAGTACAGTGTGTGGATTGGAGGTTCCATCTTGGCATCCTTGAGCACTTTCCAATGTGGATTGCCAAGGCTGAGTATGATGAGTCTGGCCCTTCAATTGTCCACAGGAAATGCTTCTGATCCTGCAAACACGGGTCGATTTCGAACGACCCTAGCTGTTTTCTCCAAAATGCTGGTGAATGCATTTGGGCTGCATAGAATAATTTTGACCTCAGTTTTGCTGCTCAAGGGGAAGAGTTCTTTTTAG

Coding sequence (CDS)

ATGAAAATTTTGACCGAGCGTGGTTATTCATTCACTACCTCAGCTGAGCGTGAAATTGTGAGAGATATGAAGGAAAAGTTGGCGTACATTGCCCTTGACTATGAACAAGAATTGGAAACCTCAAAGACCAGCTCTTCAGTTGAGAAGAGTTATGAGTTGCCTGATGGTCAGGTGATCACCATCGGCGCTGAGCGATTCCGATGCCCGAAAGTCCTTTTCCAACCATCCATGATCGGTATGGAAGCTGCTGGTATTCATGAGACGACATACAATTCCATCATGAAATGTGATGTTGACATCAGGAAAGATTTGTATGGAAACATTGGTGGTTCAACCATGTTCACTGGCATTGGTGATAGAATGAGCAAGGAGATCACGGCGTTGGCCCCGAGCAACATGAAGATTAAGGTCGTTGCGCCGCCTGAAAGGAAGTACAGTGTGTGGATTGGAGGTTCCATCTTGGCATCCTTGAGCACTTTCCAATGTGGATTGCCAAGGCTGAGTATGATGAGTCTGGCCCTTCAATTGTCCACAGGAAATGCTTCTGATCCTGCAAACACGGGTCGATTTCGAACGACCCTAGCTGTTTTCTCCAAAATGCTGGTGAATGCATTTGGGCTGCATAGAATAATTTTGACCTCAGTTTTGCTGCTCAAGGGGAAGAGTTCTTTTTAG

Protein sequence

MKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPKVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIGGSTMFTGIGDRMSKEITALAPSNMKIKVVAPPERKYSVWIGGSILASLSTFQCGLPRLSMMSLALQLSTGNASDPANTGRFRTTLAVFSKMLVNAFGLHRIILTSVLLLKGKSSF

Homology

[Close]

BLAST of Sed0026966 vs. NCBI nr
Match: XP_030483112.1 (actin-66 isoform X2 [Cannabis sativa])

HSP 1 Score: 325.5 bits (833), Expect = 3.7e-85
Identity = 171/192 (89.06%), Postives = 177/192 (92.19%), Query Frame = 0


Query: 1   MKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVIT 60
           MKILTERGYSFTT+AEREIVRDMKEKLAYIALDYEQELETSKT+SSVEKSYELPDGQVIT
Sbjct: 192 MKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTNSSVEKSYELPDGQVIT 251

Query: 61  IGAERFRCPKVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNI---GGSTMFTGI 120
           IGAERFRCP+VLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNI   GGSTMF GI
Sbjct: 252 IGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGI 311

Query: 121 GDRMSKEITALAPSNMKIKVVAPPERKYSVWIGGSILASLSTFQ---CGLPRLSMMSLAL 180
            DRMSKEITALAPS+MKIKVVAPPERKYSVWIGGSILASLSTFQ   CGL R +MMSL  
Sbjct: 312 ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQCRCGLQRQNMMSLDR 371

Query: 181 QLSTGNASDPAN 187
           QL TGNAS+  N
Sbjct: 372 QLFTGNASNHEN 383

[Close]

BLAST of Sed0026966 vs. NCBI nr
Match: AFZ78523.1 (actin [Populus tomentosa])

HSP 1 Score: 323.9 bits (829), Expect = 1.1e-84
Identity = 170/186 (91.40%), Postives = 175/186 (94.09%), Query Frame = 0


Query: 1   MKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVIT 60
           MKILTERGYSFTT+AEREIVRDMKEKLAYIALDYEQELET+KTSSSVEKSYELPDGQVIT
Sbjct: 192 MKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSSVEKSYELPDGQVIT 251

Query: 61  IGAERFRCPKVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNI---GGSTMFTGI 120
           IGAERFRCP+VLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNI   GGSTMF GI
Sbjct: 252 IGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGI 311

Query: 121 GDRMSKEITALAPSNMKIKVVAPPERKYSVWIGGSILASLSTF-QCGLPRLSMMSLALQL 180
            DRMSKEITALAPS+MKIKVVAPPERKYSVWIGGSILASLSTF QCGL R SMMS   QL
Sbjct: 312 ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQCGLQRQSMMSPVHQL 371

Query: 181 STGNAS 183
           STG+AS
Sbjct: 372 STGSAS 377

[Close]

BLAST of Sed0026966 vs. NCBI nr
Match: GFZ18009.1 (actin-11 [Actinidia rufa])

HSP 1 Score: 323.6 bits (828), Expect = 1.4e-84
Identity = 172/195 (88.21%), Postives = 177/195 (90.77%), Query Frame = 0


Query: 1   MKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVIT 60
           MKILTERGYSFTT+AEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVIT
Sbjct: 171 MKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVIT 230

Query: 61  IGAERFRCPKVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNI---GGSTMFTGI 120
           IGAERFRCP+VLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNI   GGSTMF GI
Sbjct: 231 IGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGI 290

Query: 121 GDRMSKEITALAPSNMKIKVVAPPERKYSVWIGGSILASLSTFQ--CGLPRLSMMSLALQ 180
            DRMSKEITALAPS+MKIKVVAPPERKYSVWIGGSILASLSTFQ  CGL R SMM+L   
Sbjct: 291 ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMCGLQRQSMMNLGRP 350

Query: 181 LSTGNASDPANTGRF 191
           L TGN S   N+ RF
Sbjct: 351 LCTGNVS---NSRRF 362

[Close]

BLAST of Sed0026966 vs. NCBI nr
Match: GFZ18008.1 (actin-11 [Actinidia rufa])

HSP 1 Score: 323.2 bits (827), Expect = 1.8e-84
Identity = 169/188 (89.89%), Postives = 174/188 (92.55%), Query Frame = 0


Query: 1   MKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVIT 60
           MKILTERGYSFTT+AEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVIT
Sbjct: 192 MKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVIT 251

Query: 61  IGAERFRCPKVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNI---GGSTMFTGI 120
           IGAERFRCP+VLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNI   GGSTMF GI
Sbjct: 252 IGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGI 311

Query: 121 GDRMSKEITALAPSNMKIKVVAPPERKYSVWIGGSILASLSTFQ--CGLPRLSMMSLALQ 180
            DRMSKEITALAPS+MKIKVVAPPERKYSVWIGGSILASLSTFQ  CGL R SMM+L   
Sbjct: 312 ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMCGLQRQSMMNLGRP 371

Query: 181 LSTGNASD 184
           L TGN S+
Sbjct: 372 LCTGNVSN 379

[Close]

BLAST of Sed0026966 vs. NCBI nr
Match: KAG6530082.1 (hypothetical protein ZIOFF_012303 [Zingiber officinale])

HSP 1 Score: 320.9 bits (821), Expect = 9.0e-84
Identity = 166/188 (88.30%), Postives = 175/188 (93.09%), Query Frame = 0


Query: 1   MKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVIT 60
           MKILTERGYSFTT+AEREIVRD+KEKLAY+ALDYEQELET+KTSS+VEKSYELPDGQVIT
Sbjct: 192 MKILTERGYSFTTTAEREIVRDIKEKLAYVALDYEQELETAKTSSAVEKSYELPDGQVIT 251

Query: 61  IGAERFRCPKVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNI---GGSTMFTGI 120
           IGAERFRCP+VLFQPS+IGMEAAGIHETTYNSIMKCDVDIRKDLYGNI   GGSTMF GI
Sbjct: 252 IGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGI 311

Query: 121 GDRMSKEITALAPSNMKIKVVAPPERKYSVWIGGSILASLSTFQ---CGLPRLSMMSLAL 180
            DRMSKEITALAPS+MKIKVVAPPERKYSVWIGGSILASLSTFQ   CGLPR S  +L  
Sbjct: 312 ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQVKCGLPRESTKNLVQ 371

Query: 181 QLSTGNAS 183
           QLSTGNAS
Sbjct: 372 QLSTGNAS 379

[Close]

BLAST of Sed0026966 vs. ExPASy Swiss-Prot
Match: P30171 (Actin-97 OS=Solanum tuberosum OX=4113 GN=AC97 PE=3 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 1.9e-81
Identity = 155/164 (94.51%), Postives = 159/164 (96.95%), Query Frame = 0


Query: 1   MKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVIT 60
           MKILTERGYSFTTSAEREIVRD+KEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVIT
Sbjct: 192 MKILTERGYSFTTSAEREIVRDVKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVIT 251

Query: 61  IGAERFRCPKVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNI---GGSTMFTGI 120
           IGAERFRCP+VLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNI   GG+TMF GI
Sbjct: 252 IGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGI 311

Query: 121 GDRMSKEITALAPSNMKIKVVAPPERKYSVWIGGSILASLSTFQ 162
            DRMSKEITALAPS+MKIKVVAPPERKYSVWIGGSILASLSTFQ
Sbjct: 312 ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQ 355

[Close]

BLAST of Sed0026966 vs. ExPASy Swiss-Prot
Match: O81221 (Actin OS=Gossypium hirsutum OX=3635 PE=3 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 5.7e-81
Identity = 153/164 (93.29%), Postives = 159/164 (96.95%), Query Frame = 0


Query: 1   MKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVIT 60
           MKILTERGYSFTT+AEREIVRD+KEKLAYIALDYEQELETSKTSSS+EKSYELPDGQVIT
Sbjct: 192 MKILTERGYSFTTTAEREIVRDVKEKLAYIALDYEQELETSKTSSSIEKSYELPDGQVIT 251

Query: 61  IGAERFRCPKVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNI---GGSTMFTGI 120
           IGAERFRCP+VLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNI   GG+TMF GI
Sbjct: 252 IGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGI 311

Query: 121 GDRMSKEITALAPSNMKIKVVAPPERKYSVWIGGSILASLSTFQ 162
            DRMSKEITALAPS+MKIKVVAPPERKYSVWIGGSILASLSTFQ
Sbjct: 312 ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQ 355

[Close]

BLAST of Sed0026966 vs. ExPASy Swiss-Prot
Match: P93584 (Actin-82 (Fragment) OS=Solanum tuberosum OX=4113 PE=3 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 1.7e-80
Identity = 152/164 (92.68%), Postives = 159/164 (96.95%), Query Frame = 0


Query: 1   MKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVIT 60
           MKILTERGYSFTT+AEREIVRD+KEKL+YIALDYEQEL+TSKTSSSVEKSYELPDGQVIT
Sbjct: 172 MKILTERGYSFTTTAEREIVRDVKEKLSYIALDYEQELDTSKTSSSVEKSYELPDGQVIT 231

Query: 61  IGAERFRCPKVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNI---GGSTMFTGI 120
           IGAERFRCP+VLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNI   GG+TMF GI
Sbjct: 232 IGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFNGI 291

Query: 121 GDRMSKEITALAPSNMKIKVVAPPERKYSVWIGGSILASLSTFQ 162
            DRMSKEITALAPS+MKIKVVAPPERKYSVWIGGSILASLSTFQ
Sbjct: 292 ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQ 335

[Close]

BLAST of Sed0026966 vs. ExPASy Swiss-Prot
Match: Q96482 (Actin-41 (Fragment) OS=Solanum lycopersicum OX=4081 PE=3 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 2.2e-80
Identity = 153/164 (93.29%), Postives = 158/164 (96.34%), Query Frame = 0


Query: 1   MKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVIT 60
           MKILTERGYSFTTSAEREIVRD+KEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVI 
Sbjct: 172 MKILTERGYSFTTSAEREIVRDVKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVIP 231

Query: 61  IGAERFRCPKVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNI---GGSTMFTGI 120
           IG+ERFRCP+VLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNI   GG+TMF GI
Sbjct: 232 IGSERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGI 291

Query: 121 GDRMSKEITALAPSNMKIKVVAPPERKYSVWIGGSILASLSTFQ 162
            DRMSKEITALAPS+MKIKVVAPPERKYSVWIGGSILASLSTFQ
Sbjct: 292 ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQ 335

[Close]

BLAST of Sed0026966 vs. ExPASy Swiss-Prot
Match: P93371 (Actin-93 (Fragment) OS=Nicotiana tabacum OX=4097 PE=3 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 2.2e-80
Identity = 152/164 (92.68%), Postives = 159/164 (96.95%), Query Frame = 0


Query: 1   MKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVIT 60
           MKILTERGYSFTT+AEREIVRD+KEKLAYIALDYEQELET+KTSSS+EKSYELPDGQVIT
Sbjct: 172 MKILTERGYSFTTTAEREIVRDVKEKLAYIALDYEQELETAKTSSSMEKSYELPDGQVIT 231

Query: 61  IGAERFRCPKVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNI---GGSTMFTGI 120
           IGAERFRCP+VLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNI   GG+TMF GI
Sbjct: 232 IGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGI 291

Query: 121 GDRMSKEITALAPSNMKIKVVAPPERKYSVWIGGSILASLSTFQ 162
            DRMSKEITALAPS+MKIKVVAPPERKYSVWIGGSILASLSTFQ
Sbjct: 292 ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQ 335

[Close]

BLAST of Sed0026966 vs. ExPASy TrEMBL
Match: L0ASD9 (Actin OS=Populus tomentosa OX=118781 PE=3 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 5.1e-85
Identity = 170/186 (91.40%), Postives = 175/186 (94.09%), Query Frame = 0


Query: 1   MKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVIT 60
           MKILTERGYSFTT+AEREIVRDMKEKLAYIALDYEQELET+KTSSSVEKSYELPDGQVIT
Sbjct: 192 MKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSSVEKSYELPDGQVIT 251

Query: 61  IGAERFRCPKVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNI---GGSTMFTGI 120
           IGAERFRCP+VLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNI   GGSTMF GI
Sbjct: 252 IGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGI 311

Query: 121 GDRMSKEITALAPSNMKIKVVAPPERKYSVWIGGSILASLSTF-QCGLPRLSMMSLALQL 180
            DRMSKEITALAPS+MKIKVVAPPERKYSVWIGGSILASLSTF QCGL R SMMS   QL
Sbjct: 312 ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQCGLQRQSMMSPVHQL 371

Query: 181 STGNAS 183
           STG+AS
Sbjct: 372 STGSAS 377

[Close]

BLAST of Sed0026966 vs. ExPASy TrEMBL
Match: A0A7J0H4M6 (Actin-11 OS=Actinidia rufa OX=165716 GN=Acr_26g0012780 PE=3 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 6.7e-85
Identity = 172/195 (88.21%), Postives = 177/195 (90.77%), Query Frame = 0


Query: 1   MKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVIT 60
           MKILTERGYSFTT+AEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVIT
Sbjct: 171 MKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVIT 230

Query: 61  IGAERFRCPKVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNI---GGSTMFTGI 120
           IGAERFRCP+VLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNI   GGSTMF GI
Sbjct: 231 IGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGI 290

Query: 121 GDRMSKEITALAPSNMKIKVVAPPERKYSVWIGGSILASLSTFQ--CGLPRLSMMSLALQ 180
            DRMSKEITALAPS+MKIKVVAPPERKYSVWIGGSILASLSTFQ  CGL R SMM+L   
Sbjct: 291 ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMCGLQRQSMMNLGRP 350

Query: 181 LSTGNASDPANTGRF 191
           L TGN S   N+ RF
Sbjct: 351 LCTGNVS---NSRRF 362

[Close]

BLAST of Sed0026966 vs. ExPASy TrEMBL
Match: A0A7J0H4Q5 (Actin-11 OS=Actinidia rufa OX=165716 GN=Acr_26g0012770 PE=3 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 8.8e-85
Identity = 169/188 (89.89%), Postives = 174/188 (92.55%), Query Frame = 0


Query: 1   MKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVIT 60
           MKILTERGYSFTT+AEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVIT
Sbjct: 192 MKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVIT 251

Query: 61  IGAERFRCPKVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNI---GGSTMFTGI 120
           IGAERFRCP+VLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNI   GGSTMF GI
Sbjct: 252 IGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGI 311

Query: 121 GDRMSKEITALAPSNMKIKVVAPPERKYSVWIGGSILASLSTFQ--CGLPRLSMMSLALQ 180
            DRMSKEITALAPS+MKIKVVAPPERKYSVWIGGSILASLSTFQ  CGL R SMM+L   
Sbjct: 312 ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMCGLQRQSMMNLGRP 371

Query: 181 LSTGNASD 184
           L TGN S+
Sbjct: 372 LCTGNVSN 379

[Close]

BLAST of Sed0026966 vs. ExPASy TrEMBL
Match: A0A7J8PC33 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=Gorai_017542 PE=3 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 6.3e-83
Identity = 164/197 (83.25%), Postives = 177/197 (89.85%), Query Frame = 0


Query: 1   MKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVIT 60
           MKILTERGYSFTT+AEREIVRDMKEKLAY+ALD+EQELET+K+SS++EKSYELPDGQVIT
Sbjct: 1   MKILTERGYSFTTTAEREIVRDMKEKLAYVALDFEQELETAKSSSAIEKSYELPDGQVIT 60

Query: 61  IGAERFRCPKVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNI---GGSTMFTGI 120
           IGAERFRCP+VLFQPS+IGMEAAGIHETTYNSIMKCDVDIRKDLYGNI   GGSTMF GI
Sbjct: 61  IGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGI 120

Query: 121 GDRMSKEITALAPSNMKIKVVAPPERKYSVWIGGSILASLSTFQ-----------CGLPR 180
            DRMSKEITALAPS+MKIKVVAPPERKYSVWIGGSILASLSTFQ           CG PR
Sbjct: 121 ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQVTFVLLSIIRCGFPR 180

Query: 181 LSMMSLALQLSTGNASD 184
           +SMM+ ALQL T +ASD
Sbjct: 181 VSMMNRALQLFTESASD 197

[Close]

BLAST of Sed0026966 vs. ExPASy TrEMBL
Match: A0A7J8RKT5 (Uncharacterized protein OS=Gossypium davidsonii OX=34287 GN=Godav_014642 PE=3 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 3.1e-82
Identity = 163/197 (82.74%), Postives = 176/197 (89.34%), Query Frame = 0


Query: 1   MKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVIT 60
           MKILTERGYSFTT+AEREIVRDMKEKLAY+ALD+EQELET+K+SS++EKSYELPDGQVIT
Sbjct: 191 MKILTERGYSFTTTAEREIVRDMKEKLAYVALDFEQELETAKSSSAIEKSYELPDGQVIT 250

Query: 61  IGAERFRCPKVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNI---GGSTMFTGI 120
           IGAERFRCP+VLFQPS+IGMEAAGIHETTYNSIMKCDVDIRKDLYGNI   GGSTMF GI
Sbjct: 251 IGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGI 310

Query: 121 GDRMSKEITALAPSNMKIKVVAPPERKYSVWIGGSILASLSTFQ-----------CGLPR 180
            DRMSKEITALAPS+MKIKVVAPPERKYSVWIGGSILASLSTFQ           CG PR
Sbjct: 311 ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQVTFVLLSIIRCGFPR 370

Query: 181 LSMMSLALQLSTGNASD 184
           +SMM+ AL L T +ASD
Sbjct: 371 VSMMNRALPLFTESASD 387

[Close]

BLAST of Sed0026966 vs. TAIR 10
Match: AT3G46520.1 (actin-12 )

HSP 1 Score: 298.9 bits (764), Expect = 3.4e-81
Identity = 152/164 (92.68%), Postives = 158/164 (96.34%), Query Frame = 0


Query: 1   MKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVIT 60
           MKILTERGYSFTT+AEREIVRDMKEKL+YIALDYEQELETSKTSSSVEKS+ELPDGQVIT
Sbjct: 192 MKILTERGYSFTTTAEREIVRDMKEKLSYIALDYEQELETSKTSSSVEKSFELPDGQVIT 251

Query: 61  IGAERFRCPKVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNI---GGSTMFTGI 120
           IGAERFRCP+VLFQPSMIGME  GIHETTYNSIMKCDVDIRKDLYGNI   GG+TMF GI
Sbjct: 252 IGAERFRCPEVLFQPSMIGMENPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFGGI 311

Query: 121 GDRMSKEITALAPSNMKIKVVAPPERKYSVWIGGSILASLSTFQ 162
           GDRMSKEITALAPS+MKIKVVAPPERKYSVWIGGSILASLSTFQ
Sbjct: 312 GDRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQ 355

[Close]

BLAST of Sed0026966 vs. TAIR 10
Match: AT5G59370.1 (actin 4 )

HSP 1 Score: 297.4 bits (760), Expect = 9.9e-81
Identity = 151/164 (92.07%), Postives = 158/164 (96.34%), Query Frame = 0


Query: 1   MKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVIT 60
           MKILTERGYSFTT+AEREIVRDMKEKL+YIALD+EQELETSKTSSSVEKS+ELPDGQVIT
Sbjct: 192 MKILTERGYSFTTTAEREIVRDMKEKLSYIALDFEQELETSKTSSSVEKSFELPDGQVIT 251

Query: 61  IGAERFRCPKVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNI---GGSTMFTGI 120
           IGAERFRCP+VLFQPSMIGME  GIHETTYNSIMKCDVDIRKDLYGNI   GG+TMF GI
Sbjct: 252 IGAERFRCPEVLFQPSMIGMENPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFGGI 311

Query: 121 GDRMSKEITALAPSNMKIKVVAPPERKYSVWIGGSILASLSTFQ 162
           GDRMSKEITALAPS+MKIKVVAPPERKYSVWIGGSILASLSTFQ
Sbjct: 312 GDRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQ 355

[Close]

BLAST of Sed0026966 vs. TAIR 10
Match: AT5G59370.2 (actin 4 )

HSP 1 Score: 297.4 bits (760), Expect = 9.9e-81
Identity = 151/164 (92.07%), Postives = 158/164 (96.34%), Query Frame = 0


Query: 1   MKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVIT 60
           MKILTERGYSFTT+AEREIVRDMKEKL+YIALD+EQELETSKTSSSVEKS+ELPDGQVIT
Sbjct: 192 MKILTERGYSFTTTAEREIVRDMKEKLSYIALDFEQELETSKTSSSVEKSFELPDGQVIT 251

Query: 61  IGAERFRCPKVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNI---GGSTMFTGI 120
           IGAERFRCP+VLFQPSMIGME  GIHETTYNSIMKCDVDIRKDLYGNI   GG+TMF GI
Sbjct: 252 IGAERFRCPEVLFQPSMIGMENPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFGGI 311

Query: 121 GDRMSKEITALAPSNMKIKVVAPPERKYSVWIGGSILASLSTFQ 162
           GDRMSKEITALAPS+MKIKVVAPPERKYSVWIGGSILASLSTFQ
Sbjct: 312 GDRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQ 355

[Close]

BLAST of Sed0026966 vs. TAIR 10
Match: AT3G12110.1 (actin-11 )

HSP 1 Score: 296.6 bits (758), Expect = 1.7e-80
Identity = 149/164 (90.85%), Postives = 157/164 (95.73%), Query Frame = 0


Query: 1   MKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVIT 60
           MKILTERGYSFTTSAEREIVRD+KEKLAYIALDYEQE+ET+ TSSSVEKSYELPDGQVIT
Sbjct: 192 MKILTERGYSFTTSAEREIVRDVKEKLAYIALDYEQEMETANTSSSVEKSYELPDGQVIT 251

Query: 61  IGAERFRCPKVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNI---GGSTMFTGI 120
           IG ERFRCP+VLFQPS++GMEAAGIHETTYNSIMKCDVDIRKDLYGNI   GG+TMF GI
Sbjct: 252 IGGERFRCPEVLFQPSLVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGI 311

Query: 121 GDRMSKEITALAPSNMKIKVVAPPERKYSVWIGGSILASLSTFQ 162
            DRMSKEITALAPS+MKIKVVAPPERKYSVWIGGSILASLSTFQ
Sbjct: 312 ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQ 355

[Close]

BLAST of Sed0026966 vs. TAIR 10
Match: AT5G09810.1 (actin 7 )

HSP 1 Score: 294.3 bits (752), Expect = 8.4e-80
Identity = 148/164 (90.24%), Postives = 157/164 (95.73%), Query Frame = 0


Query: 1   MKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVIT 60
           MKILTERGY FTT+AEREIVRD+KEKLAY+ALDYEQELET+K+SSSVEK+YELPDGQVIT
Sbjct: 192 MKILTERGYMFTTTAEREIVRDIKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQVIT 251

Query: 61  IGAERFRCPKVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNI---GGSTMFTGI 120
           IGAERFRCP+VLFQPS+IGMEA GIHETTYNSIMKCDVDIRKDLYGNI   GGSTMF GI
Sbjct: 252 IGAERFRCPEVLFQPSLIGMEAPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGI 311

Query: 121 GDRMSKEITALAPSNMKIKVVAPPERKYSVWIGGSILASLSTFQ 162
            DRMSKEITALAPS+MKIKVVAPPERKYSVWIGGSILASLSTFQ
Sbjct: 312 ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQ 355

The following BLAST results are available for this feature:

BLAST of Sed0026966 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_030483112.1	3.7e-85	89.06	actin-66 isoform X2 [Cannabis sativa]	[more]
AFZ78523.1	1.1e-84	91.40	actin [Populus tomentosa]	[more]
GFZ18009.1	1.4e-84	88.21	actin-11 [Actinidia rufa]	[more]
GFZ18008.1	1.8e-84	89.89	actin-11 [Actinidia rufa]	[more]
KAG6530082.1	9.0e-84	88.30	hypothetical protein ZIOFF_012303 [Zingiber officinale]	[more]

BLAST of Sed0026966 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P30171	1.9e-81	94.51	Actin-97 OS=Solanum tuberosum OX=4113 GN=AC97 PE=3 SV=1	[more]
O81221	5.7e-81	93.29	Actin OS=Gossypium hirsutum OX=3635 PE=3 SV=1	[more]
P93584	1.7e-80	92.68	Actin-82 (Fragment) OS=Solanum tuberosum OX=4113 PE=3 SV=1	[more]
Q96482	2.2e-80	93.29	Actin-41 (Fragment) OS=Solanum lycopersicum OX=4081 PE=3 SV=1	[more]
P93371	2.2e-80	92.68	Actin-93 (Fragment) OS=Nicotiana tabacum OX=4097 PE=3 SV=1	[more]

BLAST of Sed0026966 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
L0ASD9	5.1e-85	91.40	Actin OS=Populus tomentosa OX=118781 PE=3 SV=1	[more]
A0A7J0H4M6	6.7e-85	88.21	Actin-11 OS=Actinidia rufa OX=165716 GN=Acr_26g0012780 PE=3 SV=1	[more]
A0A7J0H4Q5	8.8e-85	89.89	Actin-11 OS=Actinidia rufa OX=165716 GN=Acr_26g0012770 PE=3 SV=1	[more]
A0A7J8PC33	6.3e-83	83.25	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=Gorai_017542 PE=3 SV=...	[more]
A0A7J8RKT5	3.1e-82	82.74	Uncharacterized protein OS=Gossypium davidsonii OX=34287 GN=Godav_014642 PE=3 SV...	[more]

BLAST of Sed0026966 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46520.1	3.4e-81	92.68	actin-12	[more]
AT5G59370.1	9.9e-81	92.07	actin 4	[more]
AT5G59370.2	9.9e-81	92.07	actin 4	[more]
AT3G12110.1	1.7e-80	90.85	actin-11	[more]
AT5G09810.1	8.4e-80	90.24	actin 7	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004000	Actin family	SMART	SM00268	actin_3	coord: 1..172 e-value: 9.8E-9 score: -21.5
IPR004000	Actin family	PFAM	PF00022	Actin	coord: 6..161 e-value: 1.0E-48 score: 165.9
IPR004000	Actin family	PANTHER	PTHR11937	ACTIN	coord: 1..163
None	No IPR available	GENE3D	3.30.420.40		coord: 147..161 e-value: 3.7E-69 score: 235.1
None	No IPR available	GENE3D	3.30.420.40		coord: 83..146 e-value: 3.7E-69 score: 235.1
None	No IPR available	GENE3D	3.90.640.10	Actin; Chain A, domain 4	coord: 1..82 e-value: 3.7E-69 score: 235.1
None	No IPR available	PANTHER	PTHR11937:SF408	ACTIN-7	coord: 1..163
IPR043129	ATPase, nucleotide binding domain	SUPERFAMILY	53067	Actin-like ATPase domain	coord: 1..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0026966.1	Sed0026966.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005856	cytoskeleton
molecular_function	GO:0005524	ATP binding