Sed0026961 (gene) Chayote v1

Overview
NameSed0026961
Typegene
OrganismSechium edule (Chayote v1)
DescriptionWD repeat-containing protein 91-like protein
LocationLG01: 64427677 .. 64428231 (+)
RNA-Seq ExpressionSed0026961
SyntenySed0026961
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATTCATTCCAGAGCTGAAAAGAGAATTTGGTGAGTTAAAGGATGTTGGTGAGAAGCAAGAGTTGAGAGTGCGTTACCATGAAACCAAAGCCTACCACATAGCCATGGCTTACCTTATTTGGGAGAGGTTCCTAATTGCCCTTTCTACTTCGAGTTCTAACTCTTCCCTCAATTATTGCTCTCATTTGTGGATCCTTTTTGGCTTCAATCTTTCTTGTAGCCTTCTCTACATTTTGTTCTTCCTCGAGCCCGTTATCATGATGTATCGAGCTCAGAACCACTTGGACGTCATTTTCCACTCGCTCGATCGAATCTCCCATCAACTCATCACTCTTAACCAAGCTACTAACCCAGATCTTGATCTAGAGGCTCGAGATTCGGTTTCTGCACGCATCGGGTTCGATTTCAGTTTTCGCGTTCCCGCACTTGATCAGTACCATCCATATAGAATTCGTCACAGGAAACTTTATTTTGCATCCATTCTCTGTGCTCTCCTTGCTGTTACTGCTTTTCAGCTTTGTATCACCTTCAGCTATTCTCAGTGCAACTAA

mRNA sequence

ATGGAATTCATTCCAGAGCTGAAAAGAGAATTTGGTGAGTTAAAGGATGTTGGTGAGAAGCAAGAGTTGAGAGTGCGTTACCATGAAACCAAAGCCTACCACATAGCCATGGCTTACCTTATTTGGGAGAGGTTCCTAATTGCCCTTTCTACTTCGAGTTCTAACTCTTCCCTCAATTATTGCTCTCATTTGTGGATCCTTTTTGGCTTCAATCTTTCTTGTAGCCTTCTCTACATTTTGTTCTTCCTCGAGCCCGTTATCATGATGTATCGAGCTCAGAACCACTTGGACGTCATTTTCCACTCGCTCGATCGAATCTCCCATCAACTCATCACTCTTAACCAAGCTACTAACCCAGATCTTGATCTAGAGGCTCGAGATTCGGTTTCTGCACGCATCGGGTTCGATTTCAGTTTTCGCGTTCCCGCACTTGATCAGTACCATCCATATAGAATTCGTCACAGGAAACTTTATTTTGCATCCATTCTCTGTGCTCTCCTTGCTGTTACTGCTTTTCAGCTTTGTATCACCTTCAGCTATTCTCAGTGCAACTAA

Coding sequence (CDS)

ATGGAATTCATTCCAGAGCTGAAAAGAGAATTTGGTGAGTTAAAGGATGTTGGTGAGAAGCAAGAGTTGAGAGTGCGTTACCATGAAACCAAAGCCTACCACATAGCCATGGCTTACCTTATTTGGGAGAGGTTCCTAATTGCCCTTTCTACTTCGAGTTCTAACTCTTCCCTCAATTATTGCTCTCATTTGTGGATCCTTTTTGGCTTCAATCTTTCTTGTAGCCTTCTCTACATTTTGTTCTTCCTCGAGCCCGTTATCATGATGTATCGAGCTCAGAACCACTTGGACGTCATTTTCCACTCGCTCGATCGAATCTCCCATCAACTCATCACTCTTAACCAAGCTACTAACCCAGATCTTGATCTAGAGGCTCGAGATTCGGTTTCTGCACGCATCGGGTTCGATTTCAGTTTTCGCGTTCCCGCACTTGATCAGTACCATCCATATAGAATTCGTCACAGGAAACTTTATTTTGCATCCATTCTCTGTGCTCTCCTTGCTGTTACTGCTTTTCAGCTTTGTATCACCTTCAGCTATTCTCAGTGCAACTAA

Protein sequence

MEFIPELKREFGELKDVGEKQELRVRYHETKAYHIAMAYLIWERFLIALSTSSSNSSLNYCSHLWILFGFNLSCSLLYILFFLEPVIMMYRAQNHLDVIFHSLDRISHQLITLNQATNPDLDLEARDSVSARIGFDFSFRVPALDQYHPYRIRHRKLYFASILCALLAVTAFQLCITFSYSQCN
Homology
BLAST of Sed0026961 vs. NCBI nr
Match: KAA0042578.1 (WD repeat-containing protein 91-like protein [Cucumis melo var. makuwa] >TYK05982.1 WD repeat-containing protein 91-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 133.7 bits (335), Expect = 1.7e-27
Identity = 81/174 (46.55%), Postives = 112/174 (64.37%), Query Frame = 0

Query: 6   ELKREFGELKDVGEKQELRVRYHETKAYHIAMAYLIWERFLIA--LSTSSSNSSLNYCSH 65
           ELKR+F  LK + EKQE RVRY+ET+A ++ +A LIW R  +      SSS S LN   H
Sbjct: 7   ELKRKFDRLKPLAEKQEQRVRYYETRAQNVTIACLIWYRLFVVGMYHISSSLSLLNCTHH 66

Query: 66  LWILFGFNLSCSLLYILFFLEPVIMMYRAQNHLDVIFHSLDRISHQLITLNQATNPDLDL 125
           LW++ GF+L+ + LY+LFFLE V M+YRAQN LD+I+   + IS Q++      NPD D 
Sbjct: 67  LWMVLGFSLASTSLYLLFFLEAVFMLYRAQNQLDIIYKQQNEISQQILNTG---NPD-DY 126

Query: 126 EARDSVSARIGF-DFSFRVPALDQYHP--YRIRHRKLYFASILCALLAVTAFQL 175
           E  DS+S+  G+ + SF V  L +YH   + +  RK+Y AS +  LLAV AF++
Sbjct: 127 EGGDSISSDNGWLELSFEVQLLHEYHRPLFTLVQRKVYIASTISTLLAVAAFEV 176

BLAST of Sed0026961 vs. NCBI nr
Match: ADN33782.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 132.5 bits (332), Expect = 3.7e-27
Identity = 83/172 (48.26%), Postives = 111/172 (64.53%), Query Frame = 0

Query: 6   ELKREFGELKDVGEKQELRVRYHETKAYHIAMAYLIWERFLIA--LSTSSSNSSLNYCSH 65
           ELKR F  LK + EKQE RVRY+ET+A ++A+A LIW+R  +     TSSS S LN   H
Sbjct: 7   ELKRNFDGLKLLAEKQEQRVRYYETRAQNVAIACLIWDRLFVVGMYHTSSSLSLLNCTPH 66

Query: 66  LWILFGFNLSCSLLYILFFLEPVIMMYRAQNHLDVIFHSLDRISHQLITLNQATNPDLDL 125
           LW++ GF+L+ + LY+LFFLE V M+YRAQN LD+I      IS Q++     T    D 
Sbjct: 67  LWMVLGFSLASTSLYLLFFLEAVFMLYRAQNQLDIISKKQIEISLQILN----TGSPNDD 126

Query: 126 EARDSVSA-RIGFDFSFRVPALDQYHPYRIRHRKLYFASILCALLAVTAFQL 175
           EA D+ S+   G + SF+V  L QYHP  +  RK+Y AS +  LLAV+AF++
Sbjct: 127 EAGDTFSSDNGGLELSFQVQLL-QYHPLTVVQRKIYIASTISTLLAVSAFEV 173

BLAST of Sed0026961 vs. NCBI nr
Match: KAA0042580.1 (WD repeat-containing protein 91-like protein [Cucumis melo var. makuwa] >TYK05984.1 WD repeat-containing protein 91-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 130.2 bits (326), Expect = 1.9e-26
Identity = 82/171 (47.95%), Postives = 109/171 (63.74%), Query Frame = 0

Query: 7   LKREFGELKDVGEKQELRVRYHETKAYHIAMAYLIWERFLIA--LSTSSSNSSLNYCSHL 66
           LKR F  LK + EKQE RVRY+ET+A ++A+A LIW+R  +     TSSS S LN   HL
Sbjct: 8   LKRNFDGLKLLAEKQEQRVRYYETRAQNVAIACLIWDRLFVVGMYHTSSSLSLLNCTPHL 67

Query: 67  WILFGFNLSCSLLYILFFLEPVIMMYRAQNHLDVIFHSLDRISHQLITLNQATNPDLDLE 126
           W++ GF+L+ + LY+LFFLE V M+YRAQN LD+I      IS Q++     T    D E
Sbjct: 68  WMVLGFSLASTSLYLLFFLEAVFMLYRAQNQLDIISKRQIEISLQILN----TGSPNDDE 127

Query: 127 ARDSVSA-RIGFDFSFRVPALDQYHPYRIRHRKLYFASILCALLAVTAFQL 175
           A D+ S+   G + SF+V  L QYHP  +  RK+Y AS +  LLAV AF++
Sbjct: 128 AGDTFSSDNGGLELSFQVQLL-QYHPLTVVQRKIYIASTISTLLAVAAFEV 173

BLAST of Sed0026961 vs. NCBI nr
Match: XP_022157130.1 (uncharacterized protein LOC111023927 [Momordica charantia])

HSP 1 Score: 130.2 bits (326), Expect = 1.9e-26
Identity = 83/175 (47.43%), Postives = 110/175 (62.86%), Query Frame = 0

Query: 1   MEFIPELKREFGELKDVGEKQELRVRYHETKAYHIAMAYLIWERFLIALSTSSSNSSLNY 60
           MEF  ELKR F  LKD+ EKQE RV+YHE++A +I MAYLIW R L   + S ++SSL  
Sbjct: 1   MEF-GELKRNFEALKDLVEKQESRVQYHESRAQNITMAYLIWGR-LFFFAISQTSSSLLK 60

Query: 61  CSHLWILFGFNLSCSLLYILFFLEPVIMMYRAQNHLDVIFHSLDRISHQ-LITLNQATNP 120
           C   W++ G ++SC+ +Y LFFLE V M+YR Q+ +D+I      I  Q L+  +Q  + 
Sbjct: 61  CIDWWMVLGLSVSCAFVYFLFFLEAVTMLYRVQHQMDIICKEQAEICQQILVARSQLDDV 120

Query: 121 DLDLEARDSVSARIGFDFSFRVPALDQYHPYRIRHRKLYFASILCALLAVTAFQL 175
           DL +EA DS     GF FSF V  L +Y  +RI  RK Y  + + ALLAVTA +L
Sbjct: 121 DLAMEAGDSSD---GFQFSFHVKLL-EYGAFRIVERKFYICATVSALLAVTAIEL 169

BLAST of Sed0026961 vs. NCBI nr
Match: XP_022157182.1 (uncharacterized protein LOC111023958 [Momordica charantia] >XP_022157183.1 uncharacterized protein LOC111023958 [Momordica charantia])

HSP 1 Score: 111.3 bits (277), Expect = 8.9e-21
Identity = 72/179 (40.22%), Postives = 101/179 (56.42%), Query Frame = 0

Query: 6   ELKREFGELKDVGEKQELRVRYHETKAYHIAMAYLIWERFLIALSTSSSNSSLNYCSHLW 65
           EL+R+F ELKD+ EKQE RVRY+ETK  +I   YLI+ R L     S ++SS N C   W
Sbjct: 5   ELERKFEELKDINEKQESRVRYYETKVQNIVFGYLIFTR-LFFFGISQTSSSFN-CKDWW 64

Query: 66  ILFGFNLSCSLLYILFFLEPVIMMYRAQNHLDVIFHSLDRISHQLITLNQATNPDLDLEA 125
           ++   +L CS +Y L FL+ V M++R Q  LD+I   L  +  Q++      +  L +E 
Sbjct: 65  VILALSLLCSFIYFLLFLDAVAMLFRTQYQLDIICKELKELFQQILVSKNQDDVGLSMET 124

Query: 126 RDSVSARIGFDFSFRVPALDQYHPYRIRHRKLYFASILCALLAVTAFQLCITFSYSQCN 185
            +S     GF+F F    L   H +RI  RK+Y    + ALLAVTA +L ++  Y  CN
Sbjct: 125 GESSG---GFEFGFHEKMLMLDH-FRIVGRKVYIYFTVSALLAVTAIELYVS-KYVLCN 176

BLAST of Sed0026961 vs. ExPASy TrEMBL
Match: A0A5D3C430 (WD repeat-containing protein 91-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00780 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 8.1e-28
Identity = 81/174 (46.55%), Postives = 112/174 (64.37%), Query Frame = 0

Query: 6   ELKREFGELKDVGEKQELRVRYHETKAYHIAMAYLIWERFLIA--LSTSSSNSSLNYCSH 65
           ELKR+F  LK + EKQE RVRY+ET+A ++ +A LIW R  +      SSS S LN   H
Sbjct: 7   ELKRKFDRLKPLAEKQEQRVRYYETRAQNVTIACLIWYRLFVVGMYHISSSLSLLNCTHH 66

Query: 66  LWILFGFNLSCSLLYILFFLEPVIMMYRAQNHLDVIFHSLDRISHQLITLNQATNPDLDL 125
           LW++ GF+L+ + LY+LFFLE V M+YRAQN LD+I+   + IS Q++      NPD D 
Sbjct: 67  LWMVLGFSLASTSLYLLFFLEAVFMLYRAQNQLDIIYKQQNEISQQILNTG---NPD-DY 126

Query: 126 EARDSVSARIGF-DFSFRVPALDQYHP--YRIRHRKLYFASILCALLAVTAFQL 175
           E  DS+S+  G+ + SF V  L +YH   + +  RK+Y AS +  LLAV AF++
Sbjct: 127 EGGDSISSDNGWLELSFEVQLLHEYHRPLFTLVQRKVYIASTISTLLAVAAFEV 176

BLAST of Sed0026961 vs. ExPASy TrEMBL
Match: A0A0A0KM15 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139820 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 8.1e-28
Identity = 89/177 (50.28%), Postives = 115/177 (64.97%), Query Frame = 0

Query: 1   MEFIPELKREFGELKDVGEKQELRVRYHETKAYHIAMAYLIWER--FLIALSTSSSNSSL 60
           MEF  ELKR+F  LK + EKQE RVRY+ET+A ++A+A LIW+R  F+    TSSS S L
Sbjct: 3   MEF-GELKRKFDGLKFLAEKQEQRVRYYETRAQNLAIASLIWDRLFFVGMYHTSSSLSLL 62

Query: 61  NYCSHLWILFGFNLSCSLLYILFFLEPVIMMYRAQNHLDVIFHSLDRISHQLITLNQATN 120
           N   HLW++F F LS + LY LFFLE V M+YRAQN LD+I      IS Q++     T 
Sbjct: 63  NCTHHLWMVFSFILSSTSLYFLFFLEAVFMLYRAQNQLDIISKKQIEISLQILN----TG 122

Query: 121 PDLDLEARDSVSARIGF-DFSFRVPALDQYHPYRIRHRKLYFASILCALLAVTAFQL 175
              D EA DS+S+  G+ + SF+V  L  YHP+ +  RK+Y AS +  LLAV AF+L
Sbjct: 123 SPNDDEAGDSISSDNGWLELSFQVQLL-PYHPFTLVQRKVYIASTIFTLLAVAAFEL 173

BLAST of Sed0026961 vs. ExPASy TrEMBL
Match: E5GBE1 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.8e-27
Identity = 83/172 (48.26%), Postives = 111/172 (64.53%), Query Frame = 0

Query: 6   ELKREFGELKDVGEKQELRVRYHETKAYHIAMAYLIWERFLIA--LSTSSSNSSLNYCSH 65
           ELKR F  LK + EKQE RVRY+ET+A ++A+A LIW+R  +     TSSS S LN   H
Sbjct: 7   ELKRNFDGLKLLAEKQEQRVRYYETRAQNVAIACLIWDRLFVVGMYHTSSSLSLLNCTPH 66

Query: 66  LWILFGFNLSCSLLYILFFLEPVIMMYRAQNHLDVIFHSLDRISHQLITLNQATNPDLDL 125
           LW++ GF+L+ + LY+LFFLE V M+YRAQN LD+I      IS Q++     T    D 
Sbjct: 67  LWMVLGFSLASTSLYLLFFLEAVFMLYRAQNQLDIISKKQIEISLQILN----TGSPNDD 126

Query: 126 EARDSVSA-RIGFDFSFRVPALDQYHPYRIRHRKLYFASILCALLAVTAFQL 175
           EA D+ S+   G + SF+V  L QYHP  +  RK+Y AS +  LLAV+AF++
Sbjct: 127 EAGDTFSSDNGGLELSFQVQLL-QYHPLTVVQRKIYIASTISTLLAVSAFEV 173

BLAST of Sed0026961 vs. ExPASy TrEMBL
Match: A0A5A7TGW8 (WD repeat-containing protein 91-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00800 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 9.0e-27
Identity = 82/171 (47.95%), Postives = 109/171 (63.74%), Query Frame = 0

Query: 7   LKREFGELKDVGEKQELRVRYHETKAYHIAMAYLIWERFLIA--LSTSSSNSSLNYCSHL 66
           LKR F  LK + EKQE RVRY+ET+A ++A+A LIW+R  +     TSSS S LN   HL
Sbjct: 8   LKRNFDGLKLLAEKQEQRVRYYETRAQNVAIACLIWDRLFVVGMYHTSSSLSLLNCTPHL 67

Query: 67  WILFGFNLSCSLLYILFFLEPVIMMYRAQNHLDVIFHSLDRISHQLITLNQATNPDLDLE 126
           W++ GF+L+ + LY+LFFLE V M+YRAQN LD+I      IS Q++     T    D E
Sbjct: 68  WMVLGFSLASTSLYLLFFLEAVFMLYRAQNQLDIISKRQIEISLQILN----TGSPNDDE 127

Query: 127 ARDSVSA-RIGFDFSFRVPALDQYHPYRIRHRKLYFASILCALLAVTAFQL 175
           A D+ S+   G + SF+V  L QYHP  +  RK+Y AS +  LLAV AF++
Sbjct: 128 AGDTFSSDNGGLELSFQVQLL-QYHPLTVVQRKIYIASTISTLLAVAAFEV 173

BLAST of Sed0026961 vs. ExPASy TrEMBL
Match: A0A6J1DS87 (uncharacterized protein LOC111023927 OS=Momordica charantia OX=3673 GN=LOC111023927 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 9.0e-27
Identity = 83/175 (47.43%), Postives = 110/175 (62.86%), Query Frame = 0

Query: 1   MEFIPELKREFGELKDVGEKQELRVRYHETKAYHIAMAYLIWERFLIALSTSSSNSSLNY 60
           MEF  ELKR F  LKD+ EKQE RV+YHE++A +I MAYLIW R L   + S ++SSL  
Sbjct: 1   MEF-GELKRNFEALKDLVEKQESRVQYHESRAQNITMAYLIWGR-LFFFAISQTSSSLLK 60

Query: 61  CSHLWILFGFNLSCSLLYILFFLEPVIMMYRAQNHLDVIFHSLDRISHQ-LITLNQATNP 120
           C   W++ G ++SC+ +Y LFFLE V M+YR Q+ +D+I      I  Q L+  +Q  + 
Sbjct: 61  CIDWWMVLGLSVSCAFVYFLFFLEAVTMLYRVQHQMDIICKEQAEICQQILVARSQLDDV 120

Query: 121 DLDLEARDSVSARIGFDFSFRVPALDQYHPYRIRHRKLYFASILCALLAVTAFQL 175
           DL +EA DS     GF FSF V  L +Y  +RI  RK Y  + + ALLAVTA +L
Sbjct: 121 DLAMEAGDSSD---GFQFSFHVKLL-EYGAFRIVERKFYICATVSALLAVTAIEL 169

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0042578.11.7e-2746.55WD repeat-containing protein 91-like protein [Cucumis melo var. makuwa] >TYK0598... [more]
ADN33782.13.7e-2748.26hypothetical protein [Cucumis melo subsp. melo][more]
KAA0042580.11.9e-2647.95WD repeat-containing protein 91-like protein [Cucumis melo var. makuwa] >TYK0598... [more]
XP_022157130.11.9e-2647.43uncharacterized protein LOC111023927 [Momordica charantia][more]
XP_022157182.18.9e-2140.22uncharacterized protein LOC111023958 [Momordica charantia] >XP_022157183.1 uncha... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C4308.1e-2846.55WD repeat-containing protein 91-like protein OS=Cucumis melo var. makuwa OX=1194... [more]
A0A0A0KM158.1e-2850.28Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139820 PE=4 SV=1[more]
E5GBE11.8e-2748.26Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
A0A5A7TGW89.0e-2747.95WD repeat-containing protein 91-like protein OS=Cucumis melo var. makuwa OX=1194... [more]
A0A6J1DS879.0e-2747.43uncharacterized protein LOC111023927 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33287:SF8SUBFAMILY NOT NAMEDcoord: 4..175
NoneNo IPR availablePANTHERPTHR33287OS03G0453550 PROTEINcoord: 4..175

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0026961.1Sed0026961.1mRNA