Sed0026883 (gene) Chayote v1

Overview


Name	Sed0026883
Type	gene
Organism	Sechium edule (Chayote v1)
Description	ylmG homolog protein 1-2, chloroplastic-like
Location	LG06: 46481187 .. 46481882 (+)
RNA-Seq Expression	Sed0026883
Synteny	Sed0026883

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCTTCGCTAATGGGTTCTCAATTTGTTCTTCCCCTTCCACACCTCACCCTCCCGCCGAAGCTTCATCGCTCTATTGCCCTCTCTCCCCCATTATTGTACCACCGAAAACCTAATTCCCTTCTTCACAAACCCGTTTTCCTCCCTCACTGCGCCGTCAAGTCTCCAAATCTTGGCCATACGGTTTTACCTTCCCATCCATCTCAAGAAGTTCCCATCCGATCGCTCCTCACAGGCCCCACCCGGATTCTTGCAACTGTTCTCTCTATATCCCTAACATTTTCGTCCTTAATCCTCAAACTTCGCCCTGCTGCTTTGATGGTCACCCAATGTCTCGTAAATCCCTTTCTTGGGATCGGGTCGTCGGGCGGGTCGTTGTTCTTCGCCGCGCTACGGGACCGCCCCAGCGGATATCTGAACACGCCTCTCACCGTGGTGGCTGCCGGGTTGGCCAAGTGGCTTGACATTTACAGTGGGGTTTTGATGGTTAGGGTTTTGCTCAGTTGGTTCCCCAACATCCCTTGGGACCGACAGCCACTCTCTGCAATTCGGGATCTCTGCGATCCCTACTTGAACCTCTTCCGGAATATCATTCCTCCAATATTCGACACCCTCGATGTTAGCCCGCTTTTGGCTTTTGCGGTTCTGGGCACACTGGGCTCGATTCTCAACAGCAGTAGGGGCGCATATTGA

mRNA sequence

ATGGCGTCTTCGCTAATGGGTTCTCAATTTGTTCTTCCCCTTCCACACCTCACCCTCCCGCCGAAGCTTCATCGCTCTATTGCCCTCTCTCCCCCATTATTGTACCACCGAAAACCTAATTCCCTTCTTCACAAACCCGTTTTCCTCCCTCACTGCGCCGTCAAGTCTCCAAATCTTGGCCATACGGTTTTACCTTCCCATCCATCTCAAGAAGTTCCCATCCGATCGCTCCTCACAGGCCCCACCCGGATTCTTGCAACTGTTCTCTCTATATCCCTAACATTTTCGTCCTTAATCCTCAAACTTCGCCCTGCTGCTTTGATGGTCACCCAATGTCTCGTAAATCCCTTTCTTGGGATCGGGTCGTCGGGCGGGTCGTTGTTCTTCGCCGCGCTACGGGACCGCCCCAGCGGATATCTGAACACGCCTCTCACCGTGGTGGCTGCCGGGTTGGCCAAGTGGCTTGACATTTACAGTGGGGTTTTGATGGTTAGGGTTTTGCTCAGTTGGTTCCCCAACATCCCTTGGGACCGACAGCCACTCTCTGCAATTCGGGATCTCTGCGATCCCTACTTGAACCTCTTCCGGAATATCATTCCTCCAATATTCGACACCCTCGATGTTAGCCCGCTTTTGGCTTTTGCGGTTCTGGGCACACTGGGCTCGATTCTCAACAGCAGTAGGGGCGCATATTGA

Coding sequence (CDS)

ATGGCGTCTTCGCTAATGGGTTCTCAATTTGTTCTTCCCCTTCCACACCTCACCCTCCCGCCGAAGCTTCATCGCTCTATTGCCCTCTCTCCCCCATTATTGTACCACCGAAAACCTAATTCCCTTCTTCACAAACCCGTTTTCCTCCCTCACTGCGCCGTCAAGTCTCCAAATCTTGGCCATACGGTTTTACCTTCCCATCCATCTCAAGAAGTTCCCATCCGATCGCTCCTCACAGGCCCCACCCGGATTCTTGCAACTGTTCTCTCTATATCCCTAACATTTTCGTCCTTAATCCTCAAACTTCGCCCTGCTGCTTTGATGGTCACCCAATGTCTCGTAAATCCCTTTCTTGGGATCGGGTCGTCGGGCGGGTCGTTGTTCTTCGCCGCGCTACGGGACCGCCCCAGCGGATATCTGAACACGCCTCTCACCGTGGTGGCTGCCGGGTTGGCCAAGTGGCTTGACATTTACAGTGGGGTTTTGATGGTTAGGGTTTTGCTCAGTTGGTTCCCCAACATCCCTTGGGACCGACAGCCACTCTCTGCAATTCGGGATCTCTGCGATCCCTACTTGAACCTCTTCCGGAATATCATTCCTCCAATATTCGACACCCTCGATGTTAGCCCGCTTTTGGCTTTTGCGGTTCTGGGCACACTGGGCTCGATTCTCAACAGCAGTAGGGGCGCATATTGA

Protein sequence

MASSLMGSQFVLPLPHLTLPPKLHRSIALSPPLLYHRKPNSLLHKPVFLPHCAVKSPNLGHTVLPSHPSQEVPIRSLLTGPTRILATVLSISLTFSSLILKLRPAALMVTQCLVNPFLGIGSSGGSLFFAALRDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSILNSSRGAY

Homology

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BLAST of Sed0026883 vs. NCBI nr
Match: XP_038895892.1 (ylmG homolog protein 1-2, chloroplastic-like [Benincasa hispida] >XP_038895898.1 ylmG homolog protein 1-2, chloroplastic-like [Benincasa hispida] >XP_038895903.1 ylmG homolog protein 1-2, chloroplastic-like [Benincasa hispida] >XP_038895908.1 ylmG homolog protein 1-2, chloroplastic-like [Benincasa hispida] >XP_038895912.1 ylmG homolog protein 1-2, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 293.5 bits (750), Expect = 1.6e-75
Identity = 169/246 (68.70%), Postives = 184/246 (74.80%), Query Frame = 0


Query: 1   MASSLMGSQFVLPLPHLTLPPKLHRSIALSPPLLYHRKPNSLLHKPVFLPHCAVKSPNLG 60
           MASSL+ SQ  LPL    LPPK HR +  SPPL               L    VKSPNLG
Sbjct: 1   MASSLIASQ-ALPLRRPLLPPKPHRPLP-SPPL---------------LRFSTVKSPNLG 60

Query: 61  HTVLP-----------SHPSQEVPIRSLLTGPTRILATVLSISLTFSSLILKL--RPAAL 120
             VL            SH SQE+PI SLLTGPTRILAT+LS+SL FS+LI+KL      +
Sbjct: 61  LRVLASSSPSTYSSKLSHQSQEIPIASLLTGPTRILATILSVSLAFSTLIVKLVQNVWPI 120

Query: 121 MVTQCLVNPFLGIGS--SGGSLFFAALRDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVR 180
           ++ QCLVNP  G+G+    GSLFFAALRDRP GYLNTPLTVVAAGLAKWLDIYSGVLMVR
Sbjct: 121 LIPQCLVNPCAGLGALQPAGSLFFAALRDRPGGYLNTPLTVVAAGLAKWLDIYSGVLMVR 180

Query: 181 VLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSILN 232
           VLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGS+LN
Sbjct: 181 VLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSVLN 229

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BLAST of Sed0026883 vs. NCBI nr
Match: XP_022148279.1 (ylmG homolog protein 1-2, chloroplastic-like [Momordica charantia])

HSP 1 Score: 288.5 bits (737), Expect = 5.1e-74
Identity = 164/246 (66.67%), Postives = 188/246 (76.42%), Query Frame = 0


Query: 1   MASSLMGSQFVLPLPHLTLPPKLHRSIALSPPLLYHRKPNSLLHKPVFLPHCAVKSPNLG 60
           MASSL+ SQ +L  P L      H SIA      ++R+  S +HKP+FL    ++SPNLG
Sbjct: 1   MASSLIASQALLRPPILP-----HSSIAAVSSQSFNRRQPSPVHKPLFLRPRTLQSPNLG 60

Query: 61  -----------HTVLPSHPSQEVPIRSLLTGPTRILATVLSISLTFSSLILKL--RPAAL 120
                       + + SH S+E+ I SLLTGPTRILATV+S+SLTFSSLILKL       
Sbjct: 61  LRVSASASPSCSSAIVSHQSEEISIGSLLTGPTRILATVVSVSLTFSSLILKLIQNVWPT 120

Query: 121 MVTQCLVNPFLGIG--SSGGSLFFAALRDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVR 180
           ++  C V+P  G+G  +S GS+FFAALRDRPSGYLNTPLTVVAAGL+KWLDIYSGVLMVR
Sbjct: 121 LLAGCFVSPSPGLGAYNSVGSMFFAALRDRPSGYLNTPLTVVAAGLSKWLDIYSGVLMVR 180

Query: 181 VLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSILN 232
           VLLSWFPNIPW+RQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSILN
Sbjct: 181 VLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSILN 240

[Close]

BLAST of Sed0026883 vs. NCBI nr
Match: XP_022980718.1 (ylmG homolog protein 1-2, chloroplastic-like [Cucurbita maxima] >XP_022980719.1 ylmG homolog protein 1-2, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 281.2 bits (718), Expect = 8.2e-72
Identity = 163/239 (68.20%), Postives = 179/239 (74.90%), Query Frame = 0


Query: 1   MASSLMGSQFVLPLPHLTLPPKLHRSIALSPPLLYHRKPNSLLHKPVFLPHCAVKSPNLG 60
           MASSL+ SQ  LPL    LPPKLH SIA+S         N  L  P+ L  C + SPN G
Sbjct: 1   MASSLIASQ-ALPLRRPVLPPKLHPSIAIS-----SHSFNRSLPSPLPLRFCTINSPNHG 60

Query: 61  HTVLP-----------SHPSQEVPIRSLLTGPTRILATVLSISLTFSSLILKL--RPAAL 120
             VL            S+ S+E+PI SLLTGPTR+LAT+LSISLTFS+LI+KL       
Sbjct: 61  LRVLASSSPSAYSPKFSNQSEEIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPS 120

Query: 121 MVTQCLVNPFLGIGS--SGGSLFFAALRDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVR 180
           ++ QCLVNP  G+G+    GSLFFAAL DRP G LNTPLTVVAAGLAKWLDIYSGVL+VR
Sbjct: 121 LIAQCLVNPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVR 180

Query: 181 VLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL 225
           VLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL
Sbjct: 181 VLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL 233

[Close]

BLAST of Sed0026883 vs. NCBI nr
Match: XP_023527027.1 (ylmG homolog protein 1-2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 280.8 bits (717), Expect = 1.1e-71
Identity = 163/239 (68.20%), Postives = 178/239 (74.48%), Query Frame = 0


Query: 1   MASSLMGSQFVLPLPHLTLPPKLHRSIALSPPLLYHRKPNSLLHKPVFLPHCAVKSPNLG 60
           MASSL+ SQ  LPL    LPPKLH SIA     +Y    N  L  P+ L  C   SPN G
Sbjct: 1   MASSLIASQ-ALPLRRPVLPPKLHPSIA-----IYSHSFNRPLPSPLPLRFCTANSPNHG 60

Query: 61  HTVLP-----------SHPSQEVPIRSLLTGPTRILATVLSISLTFSSLILKL--RPAAL 120
             VL            S+ S+E+PI SLLTGPTR+LAT+LSISLTFS+LI+KL       
Sbjct: 61  LRVLASSSPSAYSPKLSNQSEEIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPS 120

Query: 121 MVTQCLVNPFLGIGS--SGGSLFFAALRDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVR 180
           ++ QCLVNP  G+G+    GSLFFAAL DRP G LNTPLTVVAAGLAKWLDIYSGVL+VR
Sbjct: 121 LIAQCLVNPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVR 180

Query: 181 VLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL 225
           VLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL
Sbjct: 181 VLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL 233

[Close]

BLAST of Sed0026883 vs. NCBI nr
Match: XP_022956231.1 (ylmG homolog protein 1-2, chloroplastic [Cucurbita moschata] >XP_022956232.1 ylmG homolog protein 1-2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 278.5 bits (711), Expect = 5.3e-71
Identity = 162/239 (67.78%), Postives = 178/239 (74.48%), Query Frame = 0


Query: 1   MASSLMGSQFVLPLPHLTLPPKLHRSIALSPPLLYHRKPNSLLHKPVFLPHCAVKSPNLG 60
           MASSL+ SQ  LPL    LPPKLH SIA+S         N  L  P+ L  C   SPN G
Sbjct: 1   MASSLIASQ-ALPLRRPVLPPKLHPSIAIS-----SHSFNRPLPSPLPLRFCTANSPNHG 60

Query: 61  HTVLP-----------SHPSQEVPIRSLLTGPTRILATVLSISLTFSSLILKL--RPAAL 120
             VL            S+ S+++PI SLLTGPTR+LAT+LSISLTFS+LI+KL       
Sbjct: 61  LRVLASSSPSAYSPKLSNQSEDIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPS 120

Query: 121 MVTQCLVNPFLGIGS--SGGSLFFAALRDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVR 180
           ++ QCLVNP  G+G+    GSLFFAAL DRP G LNTPLTVVAAGLAKWLDIYSGVL+VR
Sbjct: 121 LIAQCLVNPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVR 180

Query: 181 VLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL 225
           VLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL
Sbjct: 181 VLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL 233

[Close]

BLAST of Sed0026883 vs. ExPASy Swiss-Prot
Match: Q9SUE0 (YlmG homolog protein 1-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG1-2 PE=2 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 4.0e-53
Identity = 128/220 (58.18%), Postives = 149/220 (67.73%), Query Frame = 0


Query: 11  VLPLPHLTLPPKLHRSIALSPPLLYHRKPNSLLHKPVFLPHCAVKSPNLGHTVLPSHPSQ 70
           +L  P L  PP +   ++L   L +    N  LH    +   AV S +    VL S P  
Sbjct: 15  ILANPRLP-PPIIRPRLSLPRKLSF----NLSLHNARTIVSSAVTSSS---PVLSSKPPS 74

Query: 71  EVPIRSLLTGPTRILAT-VLSISLTFSSLILKLRPAALMVTQCLVNPFLGIGSSGGSLFF 130
           + P     +  TR + T VL   +   SLI KL  A + ++  +   F     +   LFF
Sbjct: 75  QFP----FSDSTRSITTLVLLAGVVIKSLIQKLSVAIVNLSPQIQASF----RTASPLFF 134

Query: 131 AALRDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCD 190
           A+LRDRP+GYLNTPLTVVAAGL+KWLDIYSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCD
Sbjct: 135 ASLRDRPAGYLNTPLTVVAAGLSKWLDIYSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCD 194

Query: 191 PYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSILNSSRG 230
           PYLNLFRNIIPP+FDTLDVSPLLAFAVLGTLGSILN+SRG
Sbjct: 195 PYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLGSILNNSRG 218

[Close]

BLAST of Sed0026883 vs. ExPASy Swiss-Prot
Match: Q9SRS3 (YlmG homolog protein 1-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG1-1 PE=2 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.8e-51
Identity = 116/218 (53.21%), Postives = 142/218 (65.14%), Query Frame = 0


Query: 14  LPHLTLPPKLHRSIALSPPLLYHRKPNSLLHKPVFLPHCAVKSPNLGHTVLPSHPSQEVP 73
           LP     P+ H      PP       N      +  P     S +      P   +++  
Sbjct: 15  LPSSATSPRFHGFTNQPPPARLFFPLNPFPSLSIQNPKSIRISASASPITTPILQTEKST 74

Query: 74  IR-SLLTGPTRILATVLSISLTFSSLILKLRPAALMVTQCLVNPFLGIG-SSGGSLFFAA 133
            R S LTG TR LAT+ ++++  + ++ +    A+  +  ++   L    S+ G +FFA+
Sbjct: 75  ARSSTLTGSTRSLATLAALAIAVTRVLAQKLSLAIQTSSPVIADGLRFSLSTAGPVFFAS 134

Query: 134 LRDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCDPY 193
           LRDRP GYLNTPLTVVA G+ KWLDIYSGVLMVRVLLSWFPNIPW+RQPLSAIRDLCDPY
Sbjct: 135 LRDRPPGYLNTPLTVVAVGIKKWLDIYSGVLMVRVLLSWFPNIPWERQPLSAIRDLCDPY 194

Query: 194 LNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSILNSSRG 230
           LNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSI++ S G
Sbjct: 195 LNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIVHGSTG 232

[Close]

BLAST of Sed0026883 vs. ExPASy Swiss-Prot
Match: Q9C595 (YlmG homolog protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG2 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.6e-12
Identity = 38/77 (49.35%), Postives = 54/77 (70.13%), Query Frame = 0


Query: 146 VVAAGLAKWLDIYSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDT 205
           VVA GL  +L+IY+ +L+VR++L+WFP+ P     ++ +  LCDPYLN+FR  IPP+   
Sbjct: 133 VVANGLINFLNIYNTILVVRLVLTWFPSAP--PAIVNPLSTLCDPYLNIFRGFIPPL-GG 192

Query: 206 LDVSPLLAFAVLGTLGS 223
           LD+SP+LAF VL    S
Sbjct: 193 LDLSPILAFLVLNAFTS 206

[Close]

BLAST of Sed0026883 vs. ExPASy Swiss-Prot
Match: O78424 (Uncharacterized protein ycf19 OS=Guillardia theta OX=55529 GN=ycf19 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.7e-11
Identity = 31/87 (35.63%), Postives = 56/87 (64.37%), Query Frame = 0


Query: 140 LNTPLTVVAAGLAKWLDIYSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNII 199
           ++   T++ +    +L IY  +L++RV L+WFPN+ W  QP  ++  + DPYL +FR I+
Sbjct: 1   MSNSFTLLFSSFIGFLQIYLILLLIRVSLTWFPNVNWYGQPFYSLSRITDPYLKMFRGIV 60

Query: 200 PPIFDTLDVSPLLAFAVLGTLGSILNS 227
           PP+   +D+SP+L F +L  +  I+++
Sbjct: 61  PPLIG-IDISPILGFILLQCIMQIVSN 86

[Close]

BLAST of Sed0026883 vs. ExPASy Swiss-Prot
Match: P51353 (Uncharacterized protein ycf19 OS=Porphyra purpurea OX=2787 GN=ycf19 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.1e-10
Identity = 30/85 (35.29%), Postives = 52/85 (61.18%), Query Frame = 0


Query: 144 LTVVAAGLAKWLDIYSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIF 203
           L ++   +A + +IY  ++++++ L+WFP + W  +P  ++  + DPYL LFR  IPP+F
Sbjct: 8   LNLLLGSIANFSEIYLILILLKLSLAWFPTVNWYNEPFCSLNRITDPYLKLFRGSIPPMF 67

Query: 204 DTLDVSPLLAFAVLGTLGSILNSSR 229
             +D+SP+L    L  L  I N+ R
Sbjct: 68  G-MDMSPMLGIIFLQCLMVIFNNVR 91

[Close]

BLAST of Sed0026883 vs. ExPASy TrEMBL
Match: A0A6J1D3J5 (ylmG homolog protein 1-2, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111016972 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.5e-74
Identity = 164/246 (66.67%), Postives = 188/246 (76.42%), Query Frame = 0


Query: 1   MASSLMGSQFVLPLPHLTLPPKLHRSIALSPPLLYHRKPNSLLHKPVFLPHCAVKSPNLG 60
           MASSL+ SQ +L  P L      H SIA      ++R+  S +HKP+FL    ++SPNLG
Sbjct: 1   MASSLIASQALLRPPILP-----HSSIAAVSSQSFNRRQPSPVHKPLFLRPRTLQSPNLG 60

Query: 61  -----------HTVLPSHPSQEVPIRSLLTGPTRILATVLSISLTFSSLILKL--RPAAL 120
                       + + SH S+E+ I SLLTGPTRILATV+S+SLTFSSLILKL       
Sbjct: 61  LRVSASASPSCSSAIVSHQSEEISIGSLLTGPTRILATVVSVSLTFSSLILKLIQNVWPT 120

Query: 121 MVTQCLVNPFLGIG--SSGGSLFFAALRDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVR 180
           ++  C V+P  G+G  +S GS+FFAALRDRPSGYLNTPLTVVAAGL+KWLDIYSGVLMVR
Sbjct: 121 LLAGCFVSPSPGLGAYNSVGSMFFAALRDRPSGYLNTPLTVVAAGLSKWLDIYSGVLMVR 180

Query: 181 VLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSILN 232
           VLLSWFPNIPW+RQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSILN
Sbjct: 181 VLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSILN 240

[Close]

BLAST of Sed0026883 vs. ExPASy TrEMBL
Match: A0A6J1J015 (ylmG homolog protein 1-2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111480002 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 3.9e-72
Identity = 163/239 (68.20%), Postives = 179/239 (74.90%), Query Frame = 0


Query: 1   MASSLMGSQFVLPLPHLTLPPKLHRSIALSPPLLYHRKPNSLLHKPVFLPHCAVKSPNLG 60
           MASSL+ SQ  LPL    LPPKLH SIA+S         N  L  P+ L  C + SPN G
Sbjct: 1   MASSLIASQ-ALPLRRPVLPPKLHPSIAIS-----SHSFNRSLPSPLPLRFCTINSPNHG 60

Query: 61  HTVLP-----------SHPSQEVPIRSLLTGPTRILATVLSISLTFSSLILKL--RPAAL 120
             VL            S+ S+E+PI SLLTGPTR+LAT+LSISLTFS+LI+KL       
Sbjct: 61  LRVLASSSPSAYSPKFSNQSEEIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPS 120

Query: 121 MVTQCLVNPFLGIGS--SGGSLFFAALRDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVR 180
           ++ QCLVNP  G+G+    GSLFFAAL DRP G LNTPLTVVAAGLAKWLDIYSGVL+VR
Sbjct: 121 LIAQCLVNPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVR 180

Query: 181 VLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL 225
           VLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL
Sbjct: 181 VLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL 233

[Close]

BLAST of Sed0026883 vs. ExPASy TrEMBL
Match: A0A6J1GVR7 (ylmG homolog protein 1-2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111457989 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 2.6e-71
Identity = 162/239 (67.78%), Postives = 178/239 (74.48%), Query Frame = 0


Query: 1   MASSLMGSQFVLPLPHLTLPPKLHRSIALSPPLLYHRKPNSLLHKPVFLPHCAVKSPNLG 60
           MASSL+ SQ  LPL    LPPKLH SIA+S         N  L  P+ L  C   SPN G
Sbjct: 1   MASSLIASQ-ALPLRRPVLPPKLHPSIAIS-----SHSFNRPLPSPLPLRFCTANSPNHG 60

Query: 61  HTVLP-----------SHPSQEVPIRSLLTGPTRILATVLSISLTFSSLILKL--RPAAL 120
             VL            S+ S+++PI SLLTGPTR+LAT+LSISLTFS+LI+KL       
Sbjct: 61  LRVLASSSPSAYSPKLSNQSEDIPIGSLLTGPTRVLATILSISLTFSTLIVKLVQNVWPS 120

Query: 121 MVTQCLVNPFLGIGS--SGGSLFFAALRDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVR 180
           ++ QCLVNP  G+G+    GSLFFAAL DRP G LNTPLTVVAAGLAKWLDIYSGVL+VR
Sbjct: 121 LIAQCLVNPCTGLGAFQPAGSLFFAALVDRPGGNLNTPLTVVAAGLAKWLDIYSGVLLVR 180

Query: 181 VLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL 225
           VLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL
Sbjct: 181 VLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL 233

[Close]

BLAST of Sed0026883 vs. ExPASy TrEMBL
Match: A0A0A0LEB0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G642720 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 1.0e-64
Identity = 154/247 (62.35%), Postives = 176/247 (71.26%), Query Frame = 0


Query: 1   MASSLMGSQFVLPLPHLTLPPKLHRSIALSPPLLYHRKPNSLLHKPVFLPHCAVKSPNLG 60
           MASSL+ SQ  LPL    LPP L R     PP             P+ LP   VKSPNLG
Sbjct: 1   MASSLIASQ-SLPLRRPLLPPNLRR-----PPTY-----------PLLLPLSTVKSPNLG 60

Query: 61  HTVLP-----------SHPSQEVPIRSLLTGPTRILATVLSISLTFSSLILKL--RPAAL 120
             VL            SH SQE+PI SLLTGPTRILAT+LS+SL FS++I++L      +
Sbjct: 61  LRVLASSSPSSYSPKLSHQSQEIPISSLLTGPTRILATILSVSLAFSTVIVQLVQNVWPI 120

Query: 121 MVTQCLV-NPFLGIGS--SGGSLFFAALRDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMV 180
           ++ QCL+ NP  G+G+    GSLFFAA+R+R +  LNTPLTVVA GLAKWLDIYSGVLMV
Sbjct: 121 LIPQCLINNPCSGLGALQPAGSLFFAAVRNRTA--LNTPLTVVAVGLAKWLDIYSGVLMV 180

Query: 181 RVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL 232
           RVLLSWFPN+PW+RQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLG LG+I+
Sbjct: 181 RVLLSWFPNVPWERQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGALGAIM 228

[Close]

BLAST of Sed0026883 vs. ExPASy TrEMBL
Match: A0A5D3C9Z4 (YlmG-like protein 1-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G00210 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 2.3e-64
Identity = 152/243 (62.55%), Postives = 174/243 (71.60%), Query Frame = 0


Query: 1   MASSLMGSQFVLPLPHLTLPPKLHRSIALSPPLLYHRKPNSLLHKPVFLPHCAVKSPNLG 60
           MASSL+ SQ  LPL    LPP L R     PP             P+ LP   VKSPNLG
Sbjct: 1   MASSLIASQ-SLPLRRPLLPPNLRR----PPP------------SPLLLPLSTVKSPNLG 60

Query: 61  HTVLP-----------SHPSQEVPIRSLLTGPTRILATVLSISLTFSSLILKL--RPAAL 120
             VL            S  SQE+PI  LLTGPTRILAT+LS+SL FS++I+KL      +
Sbjct: 61  LRVLASSSLSSYSPKLSRQSQEIPISPLLTGPTRILATLLSVSLAFSTVIVKLVQNVWPI 120

Query: 121 MVTQCLV-NPFLGIGS--SGGSLFFAALRDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMV 180
           ++ QCL+ NP  G+G+    GSLFFA+LR+   G LNTPLTVVA GLAKWLDIYSG+LMV
Sbjct: 121 LIPQCLINNPCSGLGALQPAGSLFFASLRNPSVGGLNTPLTVVAVGLAKWLDIYSGILMV 180

Query: 181 RVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIL 228
           RVLLSWFPNIPW+RQPLSAIRDLCDPYLNLFRNIIPP+FDTLDVSPLLAFAVLGTLGSIL
Sbjct: 181 RVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLGSIL 226

[Close]

BLAST of Sed0026883 vs. TAIR 10
Match: AT4G27990.1 (YGGT family protein )

HSP 1 Score: 209.5 bits (532), Expect = 2.8e-54
Identity = 128/220 (58.18%), Postives = 149/220 (67.73%), Query Frame = 0


Query: 11  VLPLPHLTLPPKLHRSIALSPPLLYHRKPNSLLHKPVFLPHCAVKSPNLGHTVLPSHPSQ 70
           +L  P L  PP +   ++L   L +    N  LH    +   AV S +    VL S P  
Sbjct: 15  ILANPRLP-PPIIRPRLSLPRKLSF----NLSLHNARTIVSSAVTSSS---PVLSSKPPS 74

Query: 71  EVPIRSLLTGPTRILAT-VLSISLTFSSLILKLRPAALMVTQCLVNPFLGIGSSGGSLFF 130
           + P     +  TR + T VL   +   SLI KL  A + ++  +   F     +   LFF
Sbjct: 75  QFP----FSDSTRSITTLVLLAGVVIKSLIQKLSVAIVNLSPQIQASF----RTASPLFF 134

Query: 131 AALRDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCD 190
           A+LRDRP+GYLNTPLTVVAAGL+KWLDIYSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCD
Sbjct: 135 ASLRDRPAGYLNTPLTVVAAGLSKWLDIYSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCD 194

Query: 191 PYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSILNSSRG 230
           PYLNLFRNIIPP+FDTLDVSPLLAFAVLGTLGSILN+SRG
Sbjct: 195 PYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLGSILNNSRG 218

[Close]

BLAST of Sed0026883 vs. TAIR 10
Match: AT3G07430.1 (YGGT family protein )

HSP 1 Score: 203.4 bits (516), Expect = 2.0e-52
Identity = 116/218 (53.21%), Postives = 142/218 (65.14%), Query Frame = 0


Query: 14  LPHLTLPPKLHRSIALSPPLLYHRKPNSLLHKPVFLPHCAVKSPNLGHTVLPSHPSQEVP 73
           LP     P+ H      PP       N      +  P     S +      P   +++  
Sbjct: 15  LPSSATSPRFHGFTNQPPPARLFFPLNPFPSLSIQNPKSIRISASASPITTPILQTEKST 74

Query: 74  IR-SLLTGPTRILATVLSISLTFSSLILKLRPAALMVTQCLVNPFLGIG-SSGGSLFFAA 133
            R S LTG TR LAT+ ++++  + ++ +    A+  +  ++   L    S+ G +FFA+
Sbjct: 75  ARSSTLTGSTRSLATLAALAIAVTRVLAQKLSLAIQTSSPVIADGLRFSLSTAGPVFFAS 134

Query: 134 LRDRPSGYLNTPLTVVAAGLAKWLDIYSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCDPY 193
           LRDRP GYLNTPLTVVA G+ KWLDIYSGVLMVRVLLSWFPNIPW+RQPLSAIRDLCDPY
Sbjct: 135 LRDRPPGYLNTPLTVVAVGIKKWLDIYSGVLMVRVLLSWFPNIPWERQPLSAIRDLCDPY 194

Query: 194 LNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSILNSSRG 230
           LNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSI++ S G
Sbjct: 195 LNLFRNIIPPIFDTLDVSPLLAFAVLGTLGSIVHGSTG 232

[Close]

BLAST of Sed0026883 vs. TAIR 10
Match: AT5G21920.1 (YGGT family protein )

HSP 1 Score: 73.9 bits (180), Expect = 1.8e-13
Identity = 38/77 (49.35%), Postives = 54/77 (70.13%), Query Frame = 0


Query: 146 VVAAGLAKWLDIYSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDT 205
           VVA GL  +L+IY+ +L+VR++L+WFP+ P     ++ +  LCDPYLN+FR  IPP+   
Sbjct: 133 VVANGLINFLNIYNTILVVRLVLTWFPSAP--PAIVNPLSTLCDPYLNIFRGFIPPL-GG 192

Query: 206 LDVSPLLAFAVLGTLGS 223
           LD+SP+LAF VL    S
Sbjct: 193 LDLSPILAFLVLNAFTS 206

[Close]

BLAST of Sed0026883 vs. TAIR 10
Match: AT5G21920.2 (YGGT family protein )

HSP 1 Score: 73.9 bits (180), Expect = 1.8e-13
Identity = 38/77 (49.35%), Postives = 54/77 (70.13%), Query Frame = 0


Query: 146 VVAAGLAKWLDIYSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDT 205
           VVA GL  +L+IY+ +L+VR++L+WFP+ P     ++ +  LCDPYLN+FR  IPP+   
Sbjct: 120 VVANGLINFLNIYNTILVVRLVLTWFPSAP--PAIVNPLSTLCDPYLNIFRGFIPPL-GG 179

Query: 206 LDVSPLLAFAVLGTLGS 223
           LD+SP+LAF VL    S
Sbjct: 180 LDLSPILAFLVLNAFTS 193

[Close]

BLAST of Sed0026883 vs. TAIR 10
Match: AT5G36120.1 (cofactor assembly, complex C (B6F) )

HSP 1 Score: 44.7 bits (104), Expect = 1.2e-04
Identity = 22/75 (29.33%), Postives = 42/75 (56.00%), Query Frame = 0


Query: 155 LDIYSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAF 214
           L  +  + ++R+++SW+P +P D+ P        +P L   R +IPP+   +DV+P++ F
Sbjct: 90  LSAFGFLFILRIVMSWYPKLPVDKFPYVLAYAPTEPILVQTRKVIPPLAG-VDVTPVVWF 149

Query: 215 AVLGTLGSILNSSRG 230
            ++  L  IL   +G
Sbjct: 150 GLVSFLSEILVGPQG 163

The following BLAST results are available for this feature:

BLAST of Sed0026883 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895892.1	1.6e-75	68.70	ylmG homolog protein 1-2, chloroplastic-like [Benincasa hispida] >XP_038895898.1...	[more]
XP_022148279.1	5.1e-74	66.67	ylmG homolog protein 1-2, chloroplastic-like [Momordica charantia]	[more]
XP_022980718.1	8.2e-72	68.20	ylmG homolog protein 1-2, chloroplastic-like [Cucurbita maxima] >XP_022980719.1 ...	[more]
XP_023527027.1	1.1e-71	68.20	ylmG homolog protein 1-2, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022956231.1	5.3e-71	67.78	ylmG homolog protein 1-2, chloroplastic [Cucurbita moschata] >XP_022956232.1 ylm...	[more]

BLAST of Sed0026883 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SUE0	4.0e-53	58.18	YlmG homolog protein 1-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG1...	[more]
Q9SRS3	2.8e-51	53.21	YlmG homolog protein 1-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG1...	[more]
Q9C595	2.6e-12	49.35	YlmG homolog protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=YLMG2 P...	[more]
O78424	1.7e-11	35.63	Uncharacterized protein ycf19 OS=Guillardia theta OX=55529 GN=ycf19 PE=3 SV=1	[more]
P51353	7.1e-10	35.29	Uncharacterized protein ycf19 OS=Porphyra purpurea OX=2787 GN=ycf19 PE=3 SV=1	[more]

BLAST of Sed0026883 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D3J5	2.5e-74	66.67	ylmG homolog protein 1-2, chloroplastic-like OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6J1J015	3.9e-72	68.20	ylmG homolog protein 1-2, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1GVR7	2.6e-71	67.78	ylmG homolog protein 1-2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A0A0LEB0	1.0e-64	62.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G642720 PE=4 SV=1	[more]
A0A5D3C9Z4	2.3e-64	62.55	YlmG-like protein 1-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold60...	[more]

BLAST of Sed0026883 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G27990.1	2.8e-54	58.18	YGGT family protein	[more]
AT3G07430.1	2.0e-52	53.21	YGGT family protein	[more]
AT5G21920.1	1.8e-13	49.35	YGGT family protein	[more]
AT5G21920.2	1.8e-13	49.35	YGGT family protein	[more]
AT5G36120.1	1.2e-04	29.33	cofactor assembly, complex C (B6F)	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003425	CCB3/YggT	PFAM	PF02325	YGGT	coord: 155..223 e-value: 3.1E-16 score: 59.5
IPR003425	CCB3/YggT	PANTHER	PTHR33219	YLMG HOMOLOG PROTEIN 2, CHLOROPLASTIC	coord: 62..230
None	No IPR available	PANTHER	PTHR33219:SF10	YLMG HOMOLOG PROTEIN 1-2, CHLOROPLASTIC	coord: 62..230

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0026883.1	Sed0026883.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010020	chloroplast fission
biological_process	GO:0090143	nucleoid organization
cellular_component	GO:0016020	membrane