Sed0026841 (gene) Chayote v1

Overview


Name	Sed0026841
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Small nuclear ribonucleoprotein Sm D1
Location	LG05: 156567 .. 159459 (+)
RNA-Seq Expression	Sed0026841
Synteny	Sed0026841

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTATATTTCGAAGTATACCCCCCCGCTTCGTACAATTGCAAATTTGCTCTCCCGCTTCGTTTTTCCGTGTGTGCTTGAAACCCTACGCTCTGCATTTCCAGTGCTATCATGAAGCTTGTTAGGTATGCTTTTTTCTTTATTTCCGCTACTTTTTCTCGATCTACTCGTTATTTGCTGTATTTCGTGGTCGTTTGTATGTTTAGAAACTTGATTTTGATGTTTGTACAGGTTTTTGATGAAGCTCAACAATGAGACAGTCTCGATTGAGCTAAAAAATGGAACCGTTGTTCATGGCACTATCACAGGTCTCTATCTCTCTTTCACCCACAAACTCCCACTGCATAGCACCACTTCGTTGATTTGCTTAAACCTTTAAACCCTATATTTGCAAACTTCAACTTTCATTCTGCTTTCTGCTTTATACTCCACCTAATTGGAAGTTGTAACTGATTTCAGTCCAAAGTGATAGTTGGAATTTGAATTCTACTTACAATTTAGGGTGGTTTTTTAATTAAGAAAAAGTACAAAATTCATATCGAAACAAGTTACCCGAAGTTATCCAATTGAGATATCCGAATAGATTGTTAAATAGGGGAATATGATGACTCCCAAACAAAACAATATAGAAAATAAATTCCTTGAGTAAATTGTTAGTGTGTGAAATATTTGTGAAGATCCGATTGTTCCTTTCAAGCCACAGTTTCCAAAAACAAATCGTAAATGAGATTGAGCCAGAGAGTCTTCTTATCATTCTTGAGGGGACTTCCAACCAATACATAGTTGAGGCCTTTAGATTGAGCCAAACTTGTCAACAATATTGTCCCAAAAACTTGATGTTAGGCTAAAAGATTTCCCAATACTGTTGAAAATGTGGTTTTTAGATTCTTGATCTCTACAACAGAAGAGGCAGCAGTGTCGAGATATCTAATCCATGGGGCTTTCTTCTGGGAGATGTCTTGAGTGTTTACTGCTTTATGACAGTTCTCAAAGAAAATAAATCAACCTTTTTAGGTTGGGGCCCCTTCCAAAGAGTATCCTATAACTCTTTCCTATCTTCTGGATTAGTATCAGGCAGGGAGCTCATTTTCTAGTAGAATATCGTGTGTTTGAAAACCAACTGTGAAGCGGAAAAGATGAATCCTTGCCTTGCCATTAAGCAAACAGATTGTGAGGAATTCCGAAAATCAGTCATCAACAAAAACTAGGTAGGCATAAAGATATCCCAAGGTCATTTGAAATGAAAGACCATCCCTACAGACCAATAACAAATGGGTAAATAGGGTCTTGTAAATCATCAAGTGCTCAGAAGCTATATGTTCAATCTATAATGGTCACCTACTTAAAAATTAAGGATAGTTGTCTCATGAGAATACTTGAATTGAATTGTGCGTAAGCTGGGGTATAAAAAGAACAAAAAGGAAGTCATTTTTTGTAAGGAAGGTTCTGAAACTATATATATATATTTTTTGTAATTGTTCATCCAAAATATTTTTATGGAAGACTTAGGACTCAATGTCATAACTTTAGTTGGTCACATCTTCGGTTGGAGGATTTCACAAGTGAATATATTTATTTCACTTTAACAACCAGAATTGCACTTACAAAATTGTAAAAAGGCTTAGAGAGAATGAGTTCAGGTCATGATGACTTTCTACCTAGGCAGTAGTATGTTCAGAGTTACCTTGACAATGAAGGTAGTAGGGTTGATCAAGTGGTTGTCTCATGAAAAATAGTACAATTTGGATGAGACTAAATCTTGTTTTTTATTACTATGATTGTTGAAACACATCTAAATTGCGCTCTTCATGTTGCATTTGCATCTGTTTTCTACAAGTTACTTCTAAATCATGCACGGTTTTGATGAGTATCATAGAGATTAACACCGTATCATTGCAACCTTAAATTTAGATATAGTTATTCAACAAGTATTGCTTTCATTAATTTTTGTTTTACAAAACAATGACATTGCTTGTTTCGTATTAAAAAAGCATAAACTTTAAGTAGAGAAGCACATATCCTTTTTACTTAAAACCTAAGTATTGGTCGAGGTTAGAAATTGATGGGTTCATTTTCTTGTTTTACTTAGGTGTTGATATCAGCATGAACACCCACTTGAAGGCTGTGAAGCTTACTTTAAAGGGAAAAAATCCAGTTACCATGGATCATTTAAGTGTGAGGGGCAACAATATCAGATATTATATTCTACCGGACAGCTTGAATCTTGAGACTTTACTAGTTGAAGAGACACCCAGGGTCAAGCCCAAGAAACCAACTGCAGGTATGCGTTGTTCTTGCATTTTGCCCAAACTTTGGCCATTTTCTGAGTCAAATTGTTTATAATGAATCATATTTACTTTTTCTGTCTTTGCCTTTATATTTTGATCATTGATTCGAGGTTTTGATTAGTTTCTTTACAACACTTTTATTTTATCAATGAAAGTATTTTTCATTTCTTATATGTATACGAATTATCGGGGCTACCCATTGTCAAAATATCGCTTATGTATTTCTCCACTCTTGCTGCAACTATAGGGAGGGCTTTGGGACGTGGGCGTGGACGAGGCCGTGGGCGTGGTCGTGGGCGTGGACGCTAGATTTGTTGCAGTTTCAATTTTTGAGCCACCTAGTGAAAACTCTTGTATTGTAGCGAAGGATTTGTTGCAGTTTCAATTTTTTAGCGGCTTATTGAGAACTCTTGTATTGTAGGAAAGGTTTATGGATTTAGTGACGTCGAGAAGTGGTTCACTGTCCAATCTCATATGTTTGTTACGATGCTATCCACTTATTTTTCTTATGATTAATGTAACTTTGCTATACTTTGTGGTGCCTGGGATATTTATGCCCCTGTTAATGATTTACTCTCAATATCACCCCAATGATCAAACTTTTGC

mRNA sequence

CTTTATATTTCGAAGTATACCCCCCCGCTTCGTACAATTGCAAATTTGCTCTCCCGCTTCGTTTTTCCGTGTGTGCTTGAAACCCTACGCTCTGCATTTCCAGTGCTATCATGAAGCTTGTTAGGTTTTTGATGAAGCTCAACAATGAGACAGTCTCGATTGAGCTAAAAAATGGAACCGTTGTTCATGGCACTATCACAGGTGTTGATATCAGCATGAACACCCACTTGAAGGCTGTGAAGCTTACTTTAAAGGGAAAAAATCCAGTTACCATGGATCATTTAAGTGTGAGGGGCAACAATATCAGATATTATATTCTACCGGACAGCTTGAATCTTGAGACTTTACTAGTTGAAGAGACACCCAGGGTCAAGCCCAAGAAACCAACTGCAGGGAGGGCTTTGGGACGTGGGCGTGGACGAGGCCGTGGGCGTGGTCGTGGGCGTGGACGCTAGATTTGTTGCAGTTTCAATTTTTGAGCCACCTAGTGAAAACTCTTGTATTGTAGCGAAGGATTTGTTGCAGTTTCAATTTTTTAGCGGCTTATTGAGAACTCTTGTATTGTAGGAAAGGTTTATGGATTTAGTGACGTCGAGAAGTGGTTCACTGTCCAATCTCATATGTTTGTTACGATGCTATCCACTTATTTTTCTTATGATTAATGTAACTTTGCTATACTTTGTGGTGCCTGGGATATTTATGCCCCTGTTAATGATTTACTCTCAATATCACCCCAATGATCAAACTTTTGC

Coding sequence (CDS)

ATGAAGCTTGTTAGGTTTTTGATGAAGCTCAACAATGAGACAGTCTCGATTGAGCTAAAAAATGGAACCGTTGTTCATGGCACTATCACAGGTGTTGATATCAGCATGAACACCCACTTGAAGGCTGTGAAGCTTACTTTAAAGGGAAAAAATCCAGTTACCATGGATCATTTAAGTGTGAGGGGCAACAATATCAGATATTATATTCTACCGGACAGCTTGAATCTTGAGACTTTACTAGTTGAAGAGACACCCAGGGTCAAGCCCAAGAAACCAACTGCAGGGAGGGCTTTGGGACGTGGGCGTGGACGAGGCCGTGGGCGTGGTCGTGGGCGTGGACGCTAG

Protein sequence

MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRALGRGRGRGRGRGRGRGR

Homology

[Close]

BLAST of Sed0026841 vs. NCBI nr
Match: XP_004150106.1 (small nuclear ribonucleoprotein SmD1b [Cucumis sativus] >XP_008454659.1 PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Cucumis melo] >XP_022155676.1 small nuclear ribonucleoprotein SmD1b [Momordica charantia] >XP_022157762.1 small nuclear ribonucleoprotein SmD1b [Momordica charantia] >XP_022157763.1 small nuclear ribonucleoprotein SmD1b [Momordica charantia] >XP_038896755.1 small nuclear ribonucleoprotein SmD1b isoform X1 [Benincasa hispida] >XP_038897023.1 small nuclear ribonucleoprotein SmD1b isoform X1 [Benincasa hispida] >KGN59890.1 hypothetical protein Csa_002314 [Cucumis sativus])

HSP 1 Score: 214.5 bits (545), Expect = 4.6e-52
Identity = 113/114 (99.12%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRALGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR LGRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 114

[Close]

BLAST of Sed0026841 vs. NCBI nr
Match: XP_030552831.1 (small nuclear ribonucleoprotein SmD1a [Rhodamnia argentea])

HSP 1 Score: 213.8 bits (543), Expect = 7.9e-52
Identity = 112/114 (98.25%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLK VKLTLKGKNPVT+DHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRALGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRALGRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRALGRGRGRGRGRGRGRGR 114

[Close]

BLAST of Sed0026841 vs. NCBI nr
Match: XP_038681834.1 (small nuclear ribonucleoprotein SmD1a-like [Tripterygium wilfordii] >XP_038708712.1 small nuclear ribonucleoprotein SmD1a-like [Tripterygium wilfordii] >KAF5732756.1 small nuclear ribonucleoprotein Sm D1 [Tripterygium wilfordii] >KAF5744193.1 small nuclear ribonucleoprotein Sm D1 [Tripterygium wilfordii])

HSP 1 Score: 213.4 bits (542), Expect = 1.0e-51
Identity = 111/114 (97.37%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLK+VKLTLKGKNPVT+DHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKSVKLTLKGKNPVTLDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRALGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRA+GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRAMGRGRGRGRGRGRGRGR 114

[Close]

BLAST of Sed0026841 vs. NCBI nr
Match: XP_022931093.1 (small nuclear ribonucleoprotein SmD1b [Cucurbita moschata] >XP_022995872.1 small nuclear ribonucleoprotein SmD1b [Cucurbita maxima] >XP_023533992.1 small nuclear ribonucleoprotein SmD1b [Cucurbita pepo subsp. pepo] >KAG7036369.1 Small nuclear ribonucleoprotein SmD1b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 213.4 bits (542), Expect = 1.0e-51
Identity = 112/114 (98.25%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRALGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG+ LGRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 114

[Close]

BLAST of Sed0026841 vs. NCBI nr
Match: KAG9448796.1 (hypothetical protein H6P81_008761 [Aristolochia fimbriata])

HSP 1 Score: 213.4 bits (542), Expect = 1.0e-51
Identity = 111/114 (97.37%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGT+VHGTITGVDISMNTHLK VKLTLKGKNPVT+DHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRALGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRALGRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRALGRGRGRGRGRGRGRGR 114

[Close]

BLAST of Sed0026841 vs. ExPASy Swiss-Prot
Match: Q9SSF1 (Small nuclear ribonucleoprotein SmD1a OS=Arabidopsis thaliana OX=3702 GN=SMD1A PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 6.3e-52
Identity = 104/114 (91.23%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNPVT+DHLS+
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSL 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRALGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP AG+A+GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVAGKAVGRGRGRGRGRGRGRGR 114

[Close]

BLAST of Sed0026841 vs. ExPASy Swiss-Prot
Match: Q9SY09 (Small nuclear ribonucleoprotein SmD1b OS=Arabidopsis thaliana OX=3702 GN=SMD1B PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 3.1e-51
Identity = 105/114 (92.11%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGT+VHGTITGVD+SMNTHLKAVKLTLKGKNPVT+DHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR-ALGRGRGRGRGRGRGRG 114
           RGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTAG+   GRGRGRGRGRGRGRG
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAGKIPAGRGRGRGRGRGRGRG 114

[Close]

BLAST of Sed0026841 vs. ExPASy Swiss-Prot
Match: Q3ZC10 (Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus OX=9913 GN=SNRPD1 PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 6.1e-39
Identity = 86/114 (75.44%), Postives = 99/114 (86.84%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS+
Sbjct: 1   MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRALGRGRGRGRGRGRGRGR 115
           RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A    GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGR 114

[Close]

BLAST of Sed0026841 vs. ExPASy Swiss-Prot
Match: P62314 (Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens OX=9606 GN=SNRPD1 PE=1 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 6.1e-39
Identity = 86/114 (75.44%), Postives = 99/114 (86.84%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS+
Sbjct: 1   MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRALGRGRGRGRGRGRGRGR 115
           RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A    GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGR 114

[Close]

BLAST of Sed0026841 vs. ExPASy Swiss-Prot
Match: Q4R5F6 (Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis OX=9541 GN=SNRPD1 PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 6.1e-39
Identity = 86/114 (75.44%), Postives = 99/114 (86.84%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS+
Sbjct: 1   MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRALGRGRGRGRGRGRGRGR 115
           RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A    GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGR 114

[Close]

BLAST of Sed0026841 vs. ExPASy TrEMBL
Match: A0A6J1DVC4 (Small nuclear ribonucleoprotein Sm D1 OS=Momordica charantia OX=3673 GN=LOC111024391 PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.2e-52
Identity = 113/114 (99.12%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRALGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR LGRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 114

[Close]

BLAST of Sed0026841 vs. ExPASy TrEMBL
Match: A0A0A0LD16 (Small nuclear ribonucleoprotein Sm D1 OS=Cucumis sativus OX=3659 GN=Csa_3G851900 PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.2e-52
Identity = 113/114 (99.12%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRALGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR LGRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 114

[Close]

BLAST of Sed0026841 vs. ExPASy TrEMBL
Match: A0A1S3C0D0 (Small nuclear ribonucleoprotein Sm D1 OS=Cucumis melo OX=3656 GN=LOC103495011 PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.2e-52
Identity = 113/114 (99.12%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRALGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR LGRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 114

[Close]

BLAST of Sed0026841 vs. ExPASy TrEMBL
Match: A0A7J7CG15 (Small nuclear ribonucleoprotein Sm D1 OS=Tripterygium wilfordii OX=458696 GN=HS088_TW08G00789 PE=3 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 5.0e-52
Identity = 111/114 (97.37%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLK+VKLTLKGKNPVT+DHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKSVKLTLKGKNPVTLDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRALGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRA+GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRAMGRGRGRGRGRGRGRGR 114

[Close]

BLAST of Sed0026841 vs. ExPASy TrEMBL
Match: A0A6J1K070 (Small nuclear ribonucleoprotein Sm D1 OS=Cucurbita maxima OX=3661 GN=LOC111491270 PE=3 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 5.0e-52
Identity = 112/114 (98.25%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRALGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG+ LGRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 114

[Close]

BLAST of Sed0026841 vs. TAIR 10
Match: AT3G07590.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 204.5 bits (519), Expect = 4.5e-53
Identity = 104/114 (91.23%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNPVT+DHLS+
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSL 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRALGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP AG+A+GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVAGKAVGRGRGRGRGRGRGRGR 114

[Close]

BLAST of Sed0026841 vs. TAIR 10
Match: AT3G07590.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 204.5 bits (519), Expect = 4.5e-53
Identity = 104/114 (91.23%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNPVT+DHLS+
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSL 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRALGRGRGRGRGRGRGRGR 115
           RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP AG+A+GRGRGRGRGRGRGRGR
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVAGKAVGRGRGRGRGRGRGRGR 114

[Close]

BLAST of Sed0026841 vs. TAIR 10
Match: AT4G02840.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 202.2 bits (513), Expect = 2.2e-52
Identity = 105/114 (92.11%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGT+VHGTITGVD+SMNTHLKAVKLTLKGKNPVT+DHLSV
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR-ALGRGRGRGRGRGRGRG 114
           RGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTAG+   GRGRGRGRGRGRGRG
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAGKIPAGRGRGRGRGRGRGRG 114

[Close]

BLAST of Sed0026841 vs. TAIR 10
Match: AT4G02840.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 194.1 bits (492), Expect = 6.0e-50
Identity = 105/124 (84.68%), Postives = 111/124 (89.52%), Query Frame = 0


Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTIT----------GVDISMNTHLKAVKLTLKGK 60
           MKLVRFLMKLNNETVSIELKNGT+VHGTIT          GVD+SMNTHLKAVKLTLKGK
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTIVHGTITDEYTRFYLNRGVDVSMNTHLKAVKLTLKGK 60

Query: 61  NPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR-ALGRGRGRGRGRG 114
           NPVT+DHLSVRGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTAG+   GRGRGRGRGRG
Sbjct: 61  NPVTLDHLSVRGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAGKIPAGRGRGRGRGRG 120

[Close]

BLAST of Sed0026841 vs. TAIR 10
Match: AT1G20580.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 50.4 bits (119), Expect = 1.1e-06
Identity = 33/113 (29.20%), Postives = 59/113 (52.21%), Query Frame = 0


Query: 4   VRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGN 63
           V+ L + +   V++ELK+G +  G++   + + N  L+ +  T K      ++H+ +RG+
Sbjct: 9   VKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQLEHVFIRGS 68

Query: 64  NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRALGRGRGRGR---GRGRGRG 114
            +R+ ++PD L    +      R+K K  + G   GRG  RG+   G GRG G
Sbjct: 69  KVRFMVIPDILKHAPMFKRLDARIKGKSSSLGVGRGRGAMRGKPAAGPGRGTG 121

The following BLAST results are available for this feature:

BLAST of Sed0026841 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150106.1	4.6e-52	99.12	small nuclear ribonucleoprotein SmD1b [Cucumis sativus] >XP_008454659.1 PREDICTE...	[more]
XP_030552831.1	7.9e-52	98.25	small nuclear ribonucleoprotein SmD1a [Rhodamnia argentea]	[more]
XP_038681834.1	1.0e-51	97.37	small nuclear ribonucleoprotein SmD1a-like [Tripterygium wilfordii] >XP_03870871...	[more]
XP_022931093.1	1.0e-51	98.25	small nuclear ribonucleoprotein SmD1b [Cucurbita moschata] >XP_022995872.1 small...	[more]
KAG9448796.1	1.0e-51	97.37	hypothetical protein H6P81_008761 [Aristolochia fimbriata]	[more]

BLAST of Sed0026841 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SSF1	6.3e-52	91.23	Small nuclear ribonucleoprotein SmD1a OS=Arabidopsis thaliana OX=3702 GN=SMD1A P...	[more]
Q9SY09	3.1e-51	92.11	Small nuclear ribonucleoprotein SmD1b OS=Arabidopsis thaliana OX=3702 GN=SMD1B P...	[more]
Q3ZC10	6.1e-39	75.44	Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus OX=9913 GN=SNRPD1 PE=3 SV=1	[more]
P62314	6.1e-39	75.44	Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens OX=9606 GN=SNRPD1 PE=1 SV=...	[more]
Q4R5F6	6.1e-39	75.44	Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis OX=9541 GN=SNRPD1 P...	[more]

BLAST of Sed0026841 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DVC4	2.2e-52	99.12	Small nuclear ribonucleoprotein Sm D1 OS=Momordica charantia OX=3673 GN=LOC11102...	[more]
A0A0A0LD16	2.2e-52	99.12	Small nuclear ribonucleoprotein Sm D1 OS=Cucumis sativus OX=3659 GN=Csa_3G851900...	[more]
A0A1S3C0D0	2.2e-52	99.12	Small nuclear ribonucleoprotein Sm D1 OS=Cucumis melo OX=3656 GN=LOC103495011 PE...	[more]
A0A7J7CG15	5.0e-52	97.37	Small nuclear ribonucleoprotein Sm D1 OS=Tripterygium wilfordii OX=458696 GN=HS0...	[more]
A0A6J1K070	5.0e-52	98.25	Small nuclear ribonucleoprotein Sm D1 OS=Cucurbita maxima OX=3661 GN=LOC11149127...	[more]

BLAST of Sed0026841 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07590.1	4.5e-53	91.23	Small nuclear ribonucleoprotein family protein	[more]
AT3G07590.2	4.5e-53	91.23	Small nuclear ribonucleoprotein family protein	[more]
AT4G02840.1	2.2e-52	92.11	Small nuclear ribonucleoprotein family protein	[more]
AT4G02840.2	6.0e-50	84.68	Small nuclear ribonucleoprotein family protein	[more]
AT1G20580.1	1.1e-06	29.20	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 112..114
None	No IPR available	GENE3D	2.30.30.100		coord: 1..49 e-value: 2.3E-19 score: 71.5 coord: 50..82 e-value: 1.9E-11 score: 46.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..114
None	No IPR available	PANTHER	PTHR23338:SF53	SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1	coord: 1..110
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 5..70 e-value: 1.1E-16 score: 71.5
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 5..69 e-value: 4.0E-18 score: 64.9
IPR027141	Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3	PANTHER	PTHR23338	SMALL NUCLEAR RIBONUCLEOPROTEIN SM	coord: 1..110
IPR034102	Small nuclear ribonucleoprotein D1	CDD	cd01724	Sm_D1	coord: 2..93 e-value: 6.57703E-58 score: 171.639
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 4..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0026841.1	Sed0026841.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
biological_process	GO:0000387	spliceosomal snRNP assembly
biological_process	GO:0006396	RNA processing
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:0000243	commitment complex
cellular_component	GO:0034715	pICln-Sm protein complex
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0034719	SMN-Sm protein complex
cellular_component	GO:0097526	spliceosomal tri-snRNP complex
cellular_component	GO:0005689	U12-type spliceosomal complex
cellular_component	GO:0005685	U1 snRNP
cellular_component	GO:0005686	U2 snRNP
cellular_component	GO:0005687	U4 snRNP
cellular_component	GO:0005682	U5 snRNP
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003723	RNA binding