Sed0026786 (gene) Chayote v1

Overview


Name	Sed0026786
Type	gene
Organism	Sechium edule (Chayote v1)
Description	cytochrome c oxidase subunit 5b-1, mitochondrial
Location	LG05: 28383754 .. 28387902 (-)
RNA-Seq Expression	Sed0026786
Synteny	Sed0026786

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGGCAGCTTCAGCCGGACCTGGTGTTCAGTGTTGTATTCCTCATTTCTCCATTTCCAAAACGAAAACGCTGAACGAGAGAGAGAGAGAGCTCGCCGTCGTAGAGGTGTGACCTGAGAACATCGCCGGAAAATCACTAACCATGTGGAGGAGATTGCTCTCGCCGCAGCTCAAAGCCCTTAAACTTCTTCCTTCTCCATCCACCGCACCATCCCGATCCATTTCCACACTCTCGCGATTTCCTGTTGCCGCTTCATCTCCCGTTTCGCTCTTCGCTCGTCACTACGGTACATCCTACTCTTCACCTTTGGATTTTCATCTCATTCATATGGATCCTTTGTTTTTGTGCTTACTGTATGTATGGTGTGAGTCCGGGCGTGGATTTGGTCTCGTGTGATTGTTAATTTGATTTCTGTTTTATATTATTAGCTGATTCTGGTTTGAAGAAGGTTCAGGATGTAATGCCGATTGCTACCGGACACGAGCGCGAAGAGCTCGAAGCCGCCCTTCAGGTGATGTTTCTTGTTTTTCGGATTTTTTATGTTGAAATTTAAAAGGAAACAGCAGAATACAAACGCAAACTAGCTAAGATTATTTTCATGGATTGGTTAAAAAAAAGACGTGAATATGTATAGTTATTGATTCAATTTGATGGAGAGGTCAATGTTGATCTTCTGAGTTCTACGTCTATGATCTGGATGGTGGATTTATCAAACAAATGGTTTCTTCCGTTCCTCGAATGGGTTGAAGGAAAGATCTATGATCTAGGATATTTCGTGACAAGAAAATTGTCTGTGTGAGGCTTGATGATGTAAGCTCATTTCTATGCCAAAATATTTAGATAGATTTTACCCAGGTATAGGCTCAAGAATTAAATAAGCTGCCTGCAACCAATGCACAAGTAATGCTACAACAGAATGATTTAGCAAACATTAAATGTGCAAGCTGAACCAAGCCAACAACTTGCTGGGTCTGTTAGGCTGAAGGTTCTGGAATGATAGGCGCCAAAGGACAAATCACCCTTTACGTCAACATGTTGTATTTAGCGGCCTCTTAAGTTTTCTGACACATTTCTCATATAGGACGAGTCTGTTTACGTATTTCTCACTTTGAATGCGAGTCTCATTTCGATTGGTTTTATGTTTGCAGGGAAGAGACATCCTTGATATAAACAATCCTGTTGGCCCTTTTGGCACTAAGGTTGGTGTAGTTTGCAGTTAATTTTCTTCTTGGTCCCCAAGGGGTGGTGCAATGGTTGAAAACTTGGGCTTTGAGGGTAGCCCTCAAGGTCCTGAGTTCGAGACTCACTTGTAATATTACTCCTTCTATGTCTTCGGTGCCTTGCCTAGGGATGGACATGGTTACTCTTGTTTAAAAAAAAAAAATTTCTTCTTGCATACAACACGGTTAACACTTTGGGCTGATTTGTGTCTTATTCCGCTCAAGGAGGCCCTTTTGCTTCCTTCCTCCATATTGATGCTTTATTTTTTTGACTGAATTATACATTTCTATGGTGTGAGTGTTAGTCAATGTGCTTTTCCATGATATATGTGCCAAATCACTATTGAAGTTCGAGGGCTTTTTGGTTGGGTTACTCAAAAAGGTATTCATACTCTCTTTGAAGAAGAACAAATAATATAGAATTGAATTTTTTTTGAATGTATGTAGTTCCAACCCTTTGTTGGGAAATTTTTAATAAAGAAATAACATCATTTTCTGAGCAAATTTGTAGGTTGGATTTTTTTGAGCAGTATTCTTATTTCACCTTATGTGTGTTTAAGAATATACTGATATGTGGTCTCATTCTTTTGAATGTATGTAGTTCCAACCCATTGCTAACGAGAGCAATTGCTCAACTGACAATAGTGTATGCCCATGACTAAGAGGTCATATGTTCAAATATTTCCTTCCTAATTGTTGTTGAACTTAATAAAAAATGCATGGCCTCATTGGTCGAGGAGGAGCTAGCACAACATTTAGCCCTTTGTAATATAGATGGTCTAATACCTTCTTTTCCATCTTCTAGAAAGTCGGTACCAAGTACATCAATGAAAGAAATATACTGGAGTTTCAAGAAGGCTCCCGGTTTTACTATGATTGAGAAGTTCAAGAAGAAGCCACGACTATCACTAGGTCCAGTGTATCTTTTTCTACAAGACCCCGACCTTGGATACTTTACTGTTTCTCTTCAACCACATCTTCCAGAAAATGGAAAGAACTAAAAAGTAACGTTGGTCTGTAAATGTACTTTCTTATACTTGATATTTGATCTACTAACATTTGAAGAATAAAATAAAATCCTTAATTATTGAGCCAAGCCAAACGAAACTAAAGTCGAAGAGTTTGAAGAACATACCCAAAGCCACTTAGAGAATGGCAGTTTAAGAAGACTTGTTCAGCAGGTTCTGCATTTTTTCTATATAAATGGGTGTTCTAGGAGAAATGTAGGGGTTAGAGTTCTTTGAGCGACCCCATTTGTGTCTATCCTTTCAGGGAAAATTGACCAAGAGAACACCTTGCACTTTCTAGGTAGTTTGTCATGACACTTTGTTAAATCCAGGAGAATGGGGGTTCTTACAAGACCAAAACATGATTTTGTGAAACTAACTTCGAAAGCACGAGAGGTGAGACTTCAAACCAAGTTGGAGAGAATTTATGTTTTCTCGATTAACTTGCCTATTTTCAATTCCATTACTTTGAATGTTAATACTTTTATGCAGTAGTTCATTGATTTGTGATCAATTTTATATTTACATGAGGGCTCATTTGTTGGGATACGAGCAAAGTTGTCCTACATTGGTTAGTTTTGAAAAGATCATGGTTATATAAGTGATGACAACCATTTTCATTGGTATGAGATTTTTTGGGTGAAACCAAAAGCAAAGTCAGGAGAGTTATGCTGGTCAATCTCATATTAATATGAAAATCAGCCCAAGTTGTCATACTTATCATTCTTTGCTTCAACAAAGCCTGTAACTTGCTTTGCTCTTAATTGTATATCTCAATATTTTGAGAGGATGTGCATGAAAGAATAGATTTGGTTGCATAATTTTTTTTCGTGGATGAAATCTAAACACATTCTTATTCTTTAGGAAGCGCCTGCTGTTATTAAGTCGTATTATGATGAACGATTAGTTGGGTGCCCGGGGGGTGAAGGCGGTGAGTACTTGCTATCTCTCTTAAATTCATGCTCTTCAAACCAATTTTTTACGAGTCTGACAAAATTTTAAATAACAAATTTTACGTTTATCCACTACACGTGAGAGTTTCTTATCTGACTTCTGTTGCTTCGTTTGAGTTCTAGAGGATGAGCATGATGTTGTTTGGTTTCGGCTGAAGAAAGGCAAACCACATGAATGCCCTGTTTGCACACAGTATTTTGTGGTGAGAATTTATTGTAAACTATTACCTTATATTACATGAGTTGGAATTCTTGAAACGAAATAAAAAAAAGAGAGAGTAAATTGATAGAATAAATATCATAAAAGGAATGGATCATACCTCAAAACCTAACCAAAGTTTACGAACCGGTCACTAACTTGAACATAACTCATCTAGTCGATTAGGAATTCGAATCTTTATTCTTACATGTCAATTGTGTTCCGATTATTATCATGTGTTTAAATGAATGAATCTATAGTGTCCCTGTGTGTATTACTGTTAGTTTTCTCACGTTCTAGTTCTCCCACTTCTTGATTGGGATAATTGATATTGTAATACTTATTTCTTGGAACTTTTAAGTTTTTTCTAATTTGAATTGTGGTCGCAGCTGGAAGTGGTAGGACCTGGAGGATCGCCAGATGGTTATGGAGACGATGATCACCATCATTAGTTGCAACTATCTCCTTTTCCAGAATAAACAATGGCTTTTAAAAGAGAAAAACTTCAAATATGATGCAGTTTTCATTTAAAGCTGTCTTGTTTGCAGTTGCTTCAACAACGATGAGAATCAGAGTTTTTCCGTGTCACTGTCGTCGATTAGACTCAGGCAAGTGTTCTGTTGTAAGATTGATCTTTTCAGGCTTTCTTTTATCATGTATTTTCAAATAATTGGAGGCTTATTATTTCATTACCATAGCCAGGTTGTAGTACAATTACACACAATACTCCCTTGATCTTAAAAGATAATTTGATAGCTTGCTATAATCAA

mRNA sequence

CGGGCAGCTTCAGCCGGACCTGGTGTTCAGTGTTGTATTCCTCATTTCTCCATTTCCAAAACGAAAACGCTGAACGAGAGAGAGAGAGAGCTCGCCGTCGTAGAGGTGTGACCTGAGAACATCGCCGGAAAATCACTAACCATGTGGAGGAGATTGCTCTCGCCGCAGCTCAAAGCCCTTAAACTTCTTCCTTCTCCATCCACCGCACCATCCCGATCCATTTCCACACTCTCGCGATTTCCTGTTGCCGCTTCATCTCCCGTTTCGCTCTTCGCTCGTCACTACGCTGATTCTGGTTTGAAGAAGGTTCAGGATGTAATGCCGATTGCTACCGGACACGAGCGCGAAGAGCTCGAAGCCGCCCTTCAGGGAAGAGACATCCTTGATATAAACAATCCTGTTGGCCCTTTTGGCACTAAGGAAGCGCCTGCTGTTATTAAGTCGTATTATGATGAACGATTAGTTGGGTGCCCGGGGGGTGAAGGCGAGGATGAGCATGATGTTGTTTGGTTTCGGCTGAAGAAAGGCAAACCACATGAATGCCCTGTTTGCACACAGTATTTTGTGCTGGAAGTGGTAGGACCTGGAGGATCGCCAGATGGTTATGGAGACGATGATCACCATCATTAGTTGCAACTATCTCCTTTTCCAGAATAAACAATGGCTTTTAAAAGAGAAAAACTTCAAATATGATGCAGTTTTCATTTAAAGCTGTCTTGTTTGCAGTTGCTTCAACAACGATGAGAATCAGAGTTTTTCCGTGTCACTGTCGTCGATTAGACTCAGGCAAGTGTTCTGTTGTAAGATTGATCTTTTCAGGCTTTCTTTTATCATGTATTTTCAAATAATTGGAGGCTTATTATTTCATTACCATAGCCAGGTTGTAGTACAATTACACACAATACTCCCTTGATCTTAAAAGATAATTTGATAGCTTGCTATAATCAA

Coding sequence (CDS)

ATGTGGAGGAGATTGCTCTCGCCGCAGCTCAAAGCCCTTAAACTTCTTCCTTCTCCATCCACCGCACCATCCCGATCCATTTCCACACTCTCGCGATTTCCTGTTGCCGCTTCATCTCCCGTTTCGCTCTTCGCTCGTCACTACGCTGATTCTGGTTTGAAGAAGGTTCAGGATGTAATGCCGATTGCTACCGGACACGAGCGCGAAGAGCTCGAAGCCGCCCTTCAGGGAAGAGACATCCTTGATATAAACAATCCTGTTGGCCCTTTTGGCACTAAGGAAGCGCCTGCTGTTATTAAGTCGTATTATGATGAACGATTAGTTGGGTGCCCGGGGGGTGAAGGCGAGGATGAGCATGATGTTGTTTGGTTTCGGCTGAAGAAAGGCAAACCACATGAATGCCCTGTTTGCACACAGTATTTTGTGCTGGAAGTGGTAGGACCTGGAGGATCGCCAGATGGTTATGGAGACGATGATCACCATCATTAG

Protein sequence

MWRRLLSPQLKALKLLPSPSTAPSRSISTLSRFPVAASSPVSLFARHYADSGLKKVQDVMPIATGHEREELEAALQGRDILDINNPVGPFGTKEAPAVIKSYYDERLVGCPGGEGEDEHDVVWFRLKKGKPHECPVCTQYFVLEVVGPGGSPDGYGDDDHHH

Homology

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BLAST of Sed0026786 vs. NCBI nr
Match: XP_038878141.1 (cytochrome c oxidase subunit 5b-1, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 289.7 bits (740), Expect = 1.6e-74
Identity = 147/174 (84.48%), Postives = 153/174 (87.93%), Query Frame = 0


Query: 1   MWRRLLSPQLKALKLLPSPSTAPSRSISTLSRFPVAASSPV------SLFARHYA----- 60
           MWRRLLS QL ALK LPS STAPS SIST SR  VAASS V      SLFARH++     
Sbjct: 1   MWRRLLSLQLNALKRLPSSSTAPSVSISTASRLAVAASSYVSPSPYISLFARHFSAEAAV 60

Query: 61  DSGLKK-VQDVMPIATGHEREELEAALQGRDILDINNPVGPFGTKEAPAVIKSYYDERLV 120
           D+GLKK V+DVMPIATGHEREELEAAL+GRDILDINNPVGPFGTKEAPAVIKSYYDERLV
Sbjct: 61  DAGLKKNVEDVMPIATGHEREELEAALEGRDILDINNPVGPFGTKEAPAVIKSYYDERLV 120

Query: 121 GCPGGEGEDEHDVVWFRLKKGKPHECPVCTQYFVLEVVGPGGSPDGYGDDDHHH 163
           GCPGGEGEDEHDVVWFRLKKG+PHECPVCTQYFVLEVVGPGGSPDGYGDDDHHH
Sbjct: 121 GCPGGEGEDEHDVVWFRLKKGEPHECPVCTQYFVLEVVGPGGSPDGYGDDDHHH 174

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BLAST of Sed0026786 vs. NCBI nr
Match: XP_004152218.1 (cytochrome c oxidase subunit 5b-1, mitochondrial [Cucumis sativus] >KGN52866.1 hypothetical protein Csa_014612 [Cucumis sativus])

HSP 1 Score: 273.1 bits (697), Expect = 1.6e-69
Identity = 142/179 (79.33%), Postives = 152/179 (84.92%), Query Frame = 0


Query: 1   MWRRLLSPQLKALKLLPSPST----APSRSISTLSRFPVAASSP------VSLFARHYA- 60
           MWRRLLS +L ALK LPS ST    APS SIST SR  VAASS       VSLFARH++ 
Sbjct: 1   MWRRLLSLRLSALKRLPSSSTAASAAPSGSISTASRLAVAASSRVSPSPYVSLFARHFSA 60

Query: 61  ----DSGLKK-VQDVMPIATGHEREELEAALQGRDILDINNPVGPFGTKEAPAVIKSYYD 120
               D+GLKK V+DVMPIATGHEREELEAAL+GRDILDI+NPVGPFGTKEAPAVIKSYYD
Sbjct: 61  EAAVDAGLKKNVEDVMPIATGHEREELEAALEGRDILDIDNPVGPFGTKEAPAVIKSYYD 120

Query: 121 ERLVGCPGGEGEDEHDVVWFRLKKGKPHECPVCTQYFVLEVVGPGGSPDGYG-DDDHHH 163
           ER+VGCPGGEG+DEHDVVWFRLKKG+PHECPVCTQYF LEVVGPGGSPDGYG DDDHHH
Sbjct: 121 ERIVGCPGGEGDDEHDVVWFRLKKGEPHECPVCTQYFTLEVVGPGGSPDGYGNDDDHHH 179

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BLAST of Sed0026786 vs. NCBI nr
Match: XP_023528417.1 (cytochrome c oxidase subunit 5b-1, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 268.9 bits (686), Expect = 2.9e-68
Identity = 132/173 (76.30%), Postives = 149/173 (86.13%), Query Frame = 0


Query: 1   MWRRLLSPQLKALKLLPS---PSTAPSRSISTLSRFPVAA----SSPVSLFARHYAD--- 60
           MWRRLL+ QLK+LK LPS   P++AP   IS  +R   A+    S+PVSLFAR+YA    
Sbjct: 1   MWRRLLASQLKSLKSLPSSSTPASAPLGCISKATRLGAASHVSPSAPVSLFARYYASDSA 60

Query: 61  -SGLKKVQDVMPIATGHEREELEAALQGRDILDINNPVGPFGTKEAPAVIKSYYDERLVG 120
            +G+KKV+DVMPIATGHEREELEA+LQG+DILDIN+PVGPFGTKEAPAVIKSYYDERLVG
Sbjct: 61  GTGVKKVEDVMPIATGHEREELEASLQGKDILDINHPVGPFGTKEAPAVIKSYYDERLVG 120

Query: 121 CPGGEGEDEHDVVWFRLKKGKPHECPVCTQYFVLEVVGPGGSPDGYGDDDHHH 163
           CPGGEGEDEHDVVWFRL+K  PHECPVC+QYFVLEVVGPGGSPDG+GDDDHHH
Sbjct: 121 CPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGFGDDDHHH 173

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BLAST of Sed0026786 vs. NCBI nr
Match: XP_008454275.1 (PREDICTED: cytochrome c oxidase subunit 5b-1, mitochondrial [Cucumis melo] >KAA0044422.1 cytochrome c oxidase subunit 5b-1 [Cucumis melo var. makuwa] >TYK29549.1 cytochrome c oxidase subunit 5b-1 [Cucumis melo var. makuwa])

HSP 1 Score: 268.5 bits (685), Expect = 3.8e-68
Identity = 138/178 (77.53%), Postives = 148/178 (83.15%), Query Frame = 0


Query: 1   MWRRLLSPQLKALKLLPSPST----APSRSISTLSRFPVAASSP------VSLFARHYA- 60
           MWRRLLS  L ALK LPS ST    APS SIST SR  VAASS       VSLFARH++ 
Sbjct: 1   MWRRLLSLHLNALKRLPSSSTAASAAPSGSISTASRLAVAASSRVSPSPCVSLFARHFSA 60

Query: 61  ----DSGLKK-VQDVMPIATGHEREELEAALQGRDILDINNPVGPFGTKEAPAVIKSYYD 120
               D+GL+K V+DVMPIATGHEREELEA L+GRDILDINNPVGPFGTKEAPAVIKSYYD
Sbjct: 61  EAAVDAGLRKNVEDVMPIATGHEREELEATLEGRDILDINNPVGPFGTKEAPAVIKSYYD 120

Query: 121 ERLVGCPGGEGEDEHDVVWFRLKKGKPHECPVCTQYFVLEVVGPGGSPDGYGDDDHHH 163
           ER+VGCPGGEGEDEHDV+WFRL+KG+P ECPVCTQYF LEVVGPGGSPDGYGDDD HH
Sbjct: 121 ERIVGCPGGEGEDEHDVIWFRLRKGEPLECPVCTQYFALEVVGPGGSPDGYGDDDDHH 178

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BLAST of Sed0026786 vs. NCBI nr
Match: XP_022956147.1 (cytochrome c oxidase subunit 5b-1, mitochondrial-like [Cucurbita moschata] >XP_022980065.1 cytochrome c oxidase subunit 5b-1, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 267.7 bits (683), Expect = 6.5e-68
Identity = 131/173 (75.72%), Postives = 149/173 (86.13%), Query Frame = 0


Query: 1   MWRRLLSPQLKALKLLPS---PSTAPSRSISTLSRFPVAA----SSPVSLFARHYAD--- 60
           MWRRLL+ QLK+LK LPS   P++AP   IS  +R   A+    S+PVSLFAR+YA    
Sbjct: 1   MWRRLLASQLKSLKSLPSSSTPASAPLGCISKATRLGAASHVSPSAPVSLFARYYASDSA 60

Query: 61  -SGLKKVQDVMPIATGHEREELEAALQGRDILDINNPVGPFGTKEAPAVIKSYYDERLVG 120
            +G+KKV+DVMPIATGHEREELEA+L+G+DILDIN+PVGPFGTKEAPAVIKSYYDERLVG
Sbjct: 61  GTGVKKVEDVMPIATGHEREELEASLEGKDILDINHPVGPFGTKEAPAVIKSYYDERLVG 120

Query: 121 CPGGEGEDEHDVVWFRLKKGKPHECPVCTQYFVLEVVGPGGSPDGYGDDDHHH 163
           CPGGEGEDEHDVVWFRL+K  PHECPVC+QYFVLEVVGPGGSPDG+GDDDHHH
Sbjct: 121 CPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGFGDDDHHH 173

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BLAST of Sed0026786 vs. ExPASy Swiss-Prot
Match: Q9LW15 (Cytochrome c oxidase subunit 5b-1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=COX5B-1 PE=1 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 6.8e-52
Identity = 108/177 (61.02%), Postives = 130/177 (73.45%), Query Frame = 0


Query: 1   MWRRLLSPQLKALKLLPSPSTAPSRSISTLSR---FPVAA------SSPVSLFARHYADS 60
           MWRR++S QLK L      + +P RSI+  +R   F +AA      +S   +  R  +DS
Sbjct: 1   MWRRIVSSQLKTL-AADVVAASPRRSIAATTRPVGFYLAANRSAISASSFVIPRRFSSDS 60

Query: 61  ----GLKKVQDVMPIATGHEREELEAALQGRDILDINNPVGPFGTKEAPAVIKSYYDERL 120
                 KKV+DVMPIATGHE+EELEA L+GR + DI+ P GPFGTKEAPA++KSYYD+R+
Sbjct: 61  VETPATKKVEDVMPIATGHEKEELEAELEGRRLDDIDFPEGPFGTKEAPAIVKSYYDKRI 120

Query: 121 VGCPGGEGEDEHDVVWFRLKKGKPHECPVCTQYFVLEVVGPGGSPDGYG--DDDHHH 163
           VGCPGGEGEDEHDVVWF L+KGK  ECPVCTQYF LEVVGPGG PDG+G  DD+HHH
Sbjct: 121 VGCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFELEVVGPGGPPDGHGDEDDEHHH 176

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BLAST of Sed0026786 vs. ExPASy Swiss-Prot
Match: Q9SSB8 (Cytochrome c oxidase subunit 5b-2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=COX5B-2 PE=1 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 2.2e-50
Identity = 103/171 (60.23%), Postives = 123/171 (71.93%), Query Frame = 0


Query: 1   MWRRLLSPQLKALKLLPSPSTAPSR---------SIST-LSRFPVAASSPVSLFARHYAD 60
           MWRR++S  LK++  + S +    R         S+ST  S  P  +S    L     AD
Sbjct: 1   MWRRIVSSHLKSISAVGSCAAPSCRHAVVESTHLSLSTRASSIPAYSSIFSRLIGSAAAD 60

Query: 61  SGLKK-VQDVMPIATGHEREELEAALQGRDILDINNPVGPFGTKEAPAVIKSYYDERLVG 120
           + +KK V+DVMPIATGHE+EEL+A L+GR + DI+ P GPFGTKEAPAV+KSYYD R+VG
Sbjct: 61  TAVKKRVEDVMPIATGHEKEELQAELEGRKLDDIDFPEGPFGTKEAPAVVKSYYDMRIVG 120

Query: 121 CPGGEGEDEHDVVWFRLKKGKPHECPVCTQYFVLEVVGPGGSPDGYGDDDH 161
           CPGGEGEDEHDVVWF L+KGK  ECPVCTQYF LEVVGPGG PDG+GDD H
Sbjct: 121 CPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFKLEVVGPGGPPDGHGDDHH 171

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BLAST of Sed0026786 vs. ExPASy Swiss-Prot
Match: Q9SSS5 (Putative cytochrome c oxidase subunit 5b-like OS=Arabidopsis thaliana OX=3702 GN=At1g52710 PE=3 SV=2)

HSP 1 Score: 125.9 bits (315), Expect = 4.0e-28
Identity = 57/93 (61.29%), Postives = 69/93 (74.19%), Query Frame = 0


Query: 71  LEAALQGRDILDINNPVGPFGTKEAPAVIKSYYDERLVGCPGGEGEDEHDVVWFRLKKGK 130
           L+    GR +LDI++P  PFGTKE+PAV++SY+D+R +GC GGEGED HDVVWF L KGK
Sbjct: 4   LDKEYSGRRLLDIDHPESPFGTKESPAVVQSYFDKRNIGCRGGEGEDGHDVVWFWLDKGK 63

Query: 131 PHECPVCTQYFVLEVVGPGGSPDGYGDD-DHHH 163
             ECPVC+QYF        G PDG+GDD DHHH
Sbjct: 64  SFECPVCSQYF------EHGPPDGHGDDEDHHH 90

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BLAST of Sed0026786 vs. ExPASy Swiss-Prot
Match: P29505 (Cytochrome c oxidase subunit 5 OS=Dictyostelium discoideum OX=44689 GN=cxeA PE=1 SV=3)

HSP 1 Score: 57.8 bits (138), Expect = 1.3e-07
Identity = 24/63 (38.10%), Postives = 39/63 (61.90%), Query Frame = 0


Query: 88  GPFGTKEAPAVIKSYYDERLVGCPGGEGEDEHDVVWFRLKKGKPHECPVCTQYFVLEVVG 147
           G FGT ++P +++S +  R+V C GG+GE EHD+++  + + KP  C  C Q F L+ + 
Sbjct: 54  GAFGTLKSPVIVESIFHSRIVACEGGDGE-EHDILFHTVAEKKPTICLDCGQVFKLKHIS 113

Query: 148 PGG 151
             G
Sbjct: 114 SEG 115

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BLAST of Sed0026786 vs. ExPASy Swiss-Prot
Match: P79010 (Cytochrome c oxidase subunit 4, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cox4 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 8.7e-07
Identity = 29/86 (33.72%), Postives = 41/86 (47.67%), Query Frame = 0


Query: 63  ATGHEREELEAALQGRDILDINN-PVGPFGTKEAPAVIKSYYDERLVGCPGGEGEDEHDV 122
           ATG ER EL + L GRD  D+        GT   P ++ S    R +GC G      H++
Sbjct: 72  ATGLERYELLSELSGRDAFDMKPLDASRKGTLTDPIMVTSLDPYRHIGCTGSP-SGSHNL 131

Query: 123 VWFRLKKGKPHECPVCTQYFVLEVVG 148
           +W  + K K   CP C   + L+ +G
Sbjct: 132 IWMTVYKDKLRRCPECGSVYKLKFMG 156

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BLAST of Sed0026786 vs. ExPASy TrEMBL
Match: A0A0A0KYD4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G004280 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 7.5e-70
Identity = 142/179 (79.33%), Postives = 152/179 (84.92%), Query Frame = 0


Query: 1   MWRRLLSPQLKALKLLPSPST----APSRSISTLSRFPVAASSP------VSLFARHYA- 60
           MWRRLLS +L ALK LPS ST    APS SIST SR  VAASS       VSLFARH++ 
Sbjct: 1   MWRRLLSLRLSALKRLPSSSTAASAAPSGSISTASRLAVAASSRVSPSPYVSLFARHFSA 60

Query: 61  ----DSGLKK-VQDVMPIATGHEREELEAALQGRDILDINNPVGPFGTKEAPAVIKSYYD 120
               D+GLKK V+DVMPIATGHEREELEAAL+GRDILDI+NPVGPFGTKEAPAVIKSYYD
Sbjct: 61  EAAVDAGLKKNVEDVMPIATGHEREELEAALEGRDILDIDNPVGPFGTKEAPAVIKSYYD 120

Query: 121 ERLVGCPGGEGEDEHDVVWFRLKKGKPHECPVCTQYFVLEVVGPGGSPDGYG-DDDHHH 163
           ER+VGCPGGEG+DEHDVVWFRLKKG+PHECPVCTQYF LEVVGPGGSPDGYG DDDHHH
Sbjct: 121 ERIVGCPGGEGDDEHDVVWFRLKKGEPHECPVCTQYFTLEVVGPGGSPDGYGNDDDHHH 179

[Close]

BLAST of Sed0026786 vs. ExPASy TrEMBL
Match: A0A5A7TM92 (Cytochrome c oxidase subunit 5b-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001540 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.9e-68
Identity = 138/178 (77.53%), Postives = 148/178 (83.15%), Query Frame = 0


Query: 1   MWRRLLSPQLKALKLLPSPST----APSRSISTLSRFPVAASSP------VSLFARHYA- 60
           MWRRLLS  L ALK LPS ST    APS SIST SR  VAASS       VSLFARH++ 
Sbjct: 1   MWRRLLSLHLNALKRLPSSSTAASAAPSGSISTASRLAVAASSRVSPSPCVSLFARHFSA 60

Query: 61  ----DSGLKK-VQDVMPIATGHEREELEAALQGRDILDINNPVGPFGTKEAPAVIKSYYD 120
               D+GL+K V+DVMPIATGHEREELEA L+GRDILDINNPVGPFGTKEAPAVIKSYYD
Sbjct: 61  EAAVDAGLRKNVEDVMPIATGHEREELEATLEGRDILDINNPVGPFGTKEAPAVIKSYYD 120

Query: 121 ERLVGCPGGEGEDEHDVVWFRLKKGKPHECPVCTQYFVLEVVGPGGSPDGYGDDDHHH 163
           ER+VGCPGGEGEDEHDV+WFRL+KG+P ECPVCTQYF LEVVGPGGSPDGYGDDD HH
Sbjct: 121 ERIVGCPGGEGEDEHDVIWFRLRKGEPLECPVCTQYFALEVVGPGGSPDGYGDDDDHH 178

[Close]

BLAST of Sed0026786 vs. ExPASy TrEMBL
Match: A0A1S3BYC3 (cytochrome c oxidase subunit 5b-1, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103494723 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.9e-68
Identity = 138/178 (77.53%), Postives = 148/178 (83.15%), Query Frame = 0


Query: 1   MWRRLLSPQLKALKLLPSPST----APSRSISTLSRFPVAASSP------VSLFARHYA- 60
           MWRRLLS  L ALK LPS ST    APS SIST SR  VAASS       VSLFARH++ 
Sbjct: 1   MWRRLLSLHLNALKRLPSSSTAASAAPSGSISTASRLAVAASSRVSPSPCVSLFARHFSA 60

Query: 61  ----DSGLKK-VQDVMPIATGHEREELEAALQGRDILDINNPVGPFGTKEAPAVIKSYYD 120
               D+GL+K V+DVMPIATGHEREELEA L+GRDILDINNPVGPFGTKEAPAVIKSYYD
Sbjct: 61  EAAVDAGLRKNVEDVMPIATGHEREELEATLEGRDILDINNPVGPFGTKEAPAVIKSYYD 120

Query: 121 ERLVGCPGGEGEDEHDVVWFRLKKGKPHECPVCTQYFVLEVVGPGGSPDGYGDDDHHH 163
           ER+VGCPGGEGEDEHDV+WFRL+KG+P ECPVCTQYF LEVVGPGGSPDGYGDDD HH
Sbjct: 121 ERIVGCPGGEGEDEHDVIWFRLRKGEPLECPVCTQYFALEVVGPGGSPDGYGDDDDHH 178

[Close]

BLAST of Sed0026786 vs. ExPASy TrEMBL
Match: A0A6J1IV42 (cytochrome c oxidase subunit 5b-1, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111479582 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 3.2e-68
Identity = 131/173 (75.72%), Postives = 149/173 (86.13%), Query Frame = 0


Query: 1   MWRRLLSPQLKALKLLPS---PSTAPSRSISTLSRFPVAA----SSPVSLFARHYAD--- 60
           MWRRLL+ QLK+LK LPS   P++AP   IS  +R   A+    S+PVSLFAR+YA    
Sbjct: 1   MWRRLLASQLKSLKSLPSSSTPASAPLGCISKATRLGAASHVSPSAPVSLFARYYASDSA 60

Query: 61  -SGLKKVQDVMPIATGHEREELEAALQGRDILDINNPVGPFGTKEAPAVIKSYYDERLVG 120
            +G+KKV+DVMPIATGHEREELEA+L+G+DILDIN+PVGPFGTKEAPAVIKSYYDERLVG
Sbjct: 61  GTGVKKVEDVMPIATGHEREELEASLEGKDILDINHPVGPFGTKEAPAVIKSYYDERLVG 120

Query: 121 CPGGEGEDEHDVVWFRLKKGKPHECPVCTQYFVLEVVGPGGSPDGYGDDDHHH 163
           CPGGEGEDEHDVVWFRL+K  PHECPVC+QYFVLEVVGPGGSPDG+GDDDHHH
Sbjct: 121 CPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGFGDDDHHH 173

[Close]

BLAST of Sed0026786 vs. ExPASy TrEMBL
Match: A0A6J1GVI7 (cytochrome c oxidase subunit 5b-1, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111457927 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 3.2e-68
Identity = 131/173 (75.72%), Postives = 149/173 (86.13%), Query Frame = 0


Query: 1   MWRRLLSPQLKALKLLPS---PSTAPSRSISTLSRFPVAA----SSPVSLFARHYAD--- 60
           MWRRLL+ QLK+LK LPS   P++AP   IS  +R   A+    S+PVSLFAR+YA    
Sbjct: 1   MWRRLLASQLKSLKSLPSSSTPASAPLGCISKATRLGAASHVSPSAPVSLFARYYASDSA 60

Query: 61  -SGLKKVQDVMPIATGHEREELEAALQGRDILDINNPVGPFGTKEAPAVIKSYYDERLVG 120
            +G+KKV+DVMPIATGHEREELEA+L+G+DILDIN+PVGPFGTKEAPAVIKSYYDERLVG
Sbjct: 61  GTGVKKVEDVMPIATGHEREELEASLEGKDILDINHPVGPFGTKEAPAVIKSYYDERLVG 120

Query: 121 CPGGEGEDEHDVVWFRLKKGKPHECPVCTQYFVLEVVGPGGSPDGYGDDDHHH 163
           CPGGEGEDEHDVVWFRL+K  PHECPVC+QYFVLEVVGPGGSPDG+GDDDHHH
Sbjct: 121 CPGGEGEDEHDVVWFRLRKDVPHECPVCSQYFVLEVVGPGGSPDGFGDDDHHH 173

[Close]

BLAST of Sed0026786 vs. TAIR 10
Match: AT3G15640.2 (Rubredoxin-like superfamily protein )

HSP 1 Score: 205.3 bits (521), Expect = 3.7e-53
Identity = 108/176 (61.36%), Postives = 130/176 (73.86%), Query Frame = 0


Query: 1   MWRRLLSPQLKALKLLPSPSTAPSRSISTLSR---FPVAA------SSPVSLFARHYADS 60
           MWRR++S QLK L      + +P RSI+  +R   F +AA      +S   +  R  +DS
Sbjct: 1   MWRRIVSSQLKTL-AADVVAASPRRSIAATTRPVGFYLAANRSAISASSFVIPRRFSSDS 60

Query: 61  ---GLKKVQDVMPIATGHEREELEAALQGRDILDINNPVGPFGTKEAPAVIKSYYDERLV 120
                KKV+DVMPIATGHE+EELEA L+GR + DI+ P GPFGTKEAPA++KSYYD+R+V
Sbjct: 61  ETPATKKVEDVMPIATGHEKEELEAELEGRRLDDIDFPEGPFGTKEAPAIVKSYYDKRIV 120

Query: 121 GCPGGEGEDEHDVVWFRLKKGKPHECPVCTQYFVLEVVGPGGSPDGYG--DDDHHH 163
           GCPGGEGEDEHDVVWF L+KGK  ECPVCTQYF LEVVGPGG PDG+G  DD+HHH
Sbjct: 121 GCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFELEVVGPGGPPDGHGDEDDEHHH 175

[Close]

BLAST of Sed0026786 vs. TAIR 10
Match: AT3G15640.1 (Rubredoxin-like superfamily protein )

HSP 1 Score: 204.9 bits (520), Expect = 4.8e-53
Identity = 108/177 (61.02%), Postives = 130/177 (73.45%), Query Frame = 0


Query: 1   MWRRLLSPQLKALKLLPSPSTAPSRSISTLSR---FPVAA------SSPVSLFARHYADS 60
           MWRR++S QLK L      + +P RSI+  +R   F +AA      +S   +  R  +DS
Sbjct: 1   MWRRIVSSQLKTL-AADVVAASPRRSIAATTRPVGFYLAANRSAISASSFVIPRRFSSDS 60

Query: 61  ----GLKKVQDVMPIATGHEREELEAALQGRDILDINNPVGPFGTKEAPAVIKSYYDERL 120
                 KKV+DVMPIATGHE+EELEA L+GR + DI+ P GPFGTKEAPA++KSYYD+R+
Sbjct: 61  VETPATKKVEDVMPIATGHEKEELEAELEGRRLDDIDFPEGPFGTKEAPAIVKSYYDKRI 120

Query: 121 VGCPGGEGEDEHDVVWFRLKKGKPHECPVCTQYFVLEVVGPGGSPDGYG--DDDHHH 163
           VGCPGGEGEDEHDVVWF L+KGK  ECPVCTQYF LEVVGPGG PDG+G  DD+HHH
Sbjct: 121 VGCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFELEVVGPGGPPDGHGDEDDEHHH 176

[Close]

BLAST of Sed0026786 vs. TAIR 10
Match: AT1G80230.1 (Rubredoxin-like superfamily protein )

HSP 1 Score: 199.9 bits (507), Expect = 1.6e-51
Identity = 103/171 (60.23%), Postives = 123/171 (71.93%), Query Frame = 0


Query: 1   MWRRLLSPQLKALKLLPSPSTAPSR---------SIST-LSRFPVAASSPVSLFARHYAD 60
           MWRR++S  LK++  + S +    R         S+ST  S  P  +S    L     AD
Sbjct: 1   MWRRIVSSHLKSISAVGSCAAPSCRHAVVESTHLSLSTRASSIPAYSSIFSRLIGSAAAD 60

Query: 61  SGLKK-VQDVMPIATGHEREELEAALQGRDILDINNPVGPFGTKEAPAVIKSYYDERLVG 120
           + +KK V+DVMPIATGHE+EEL+A L+GR + DI+ P GPFGTKEAPAV+KSYYD R+VG
Sbjct: 61  TAVKKRVEDVMPIATGHEKEELQAELEGRKLDDIDFPEGPFGTKEAPAVVKSYYDMRIVG 120

Query: 121 CPGGEGEDEHDVVWFRLKKGKPHECPVCTQYFVLEVVGPGGSPDGYGDDDH 161
           CPGGEGEDEHDVVWF L+KGK  ECPVCTQYF LEVVGPGG PDG+GDD H
Sbjct: 121 CPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFKLEVVGPGGPPDGHGDDHH 171

[Close]

BLAST of Sed0026786 vs. TAIR 10
Match: AT1G52710.1 (Rubredoxin-like superfamily protein )

HSP 1 Score: 125.9 bits (315), Expect = 2.9e-29
Identity = 57/93 (61.29%), Postives = 69/93 (74.19%), Query Frame = 0


Query: 71  LEAALQGRDILDINNPVGPFGTKEAPAVIKSYYDERLVGCPGGEGEDEHDVVWFRLKKGK 130
           L+    GR +LDI++P  PFGTKE+PAV++SY+D+R +GC GGEGED HDVVWF L KGK
Sbjct: 4   LDKEYSGRRLLDIDHPESPFGTKESPAVVQSYFDKRNIGCRGGEGEDGHDVVWFWLDKGK 63

Query: 131 PHECPVCTQYFVLEVVGPGGSPDGYGDD-DHHH 163
             ECPVC+QYF        G PDG+GDD DHHH
Sbjct: 64  SFECPVCSQYF------EHGPPDGHGDDEDHHH 90

The following BLAST results are available for this feature:

BLAST of Sed0026786 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878141.1	1.6e-74	84.48	cytochrome c oxidase subunit 5b-1, mitochondrial-like [Benincasa hispida]	[more]
XP_004152218.1	1.6e-69	79.33	cytochrome c oxidase subunit 5b-1, mitochondrial [Cucumis sativus] >KGN52866.1 h...	[more]
XP_023528417.1	2.9e-68	76.30	cytochrome c oxidase subunit 5b-1, mitochondrial-like [Cucurbita pepo subsp. pep...	[more]
XP_008454275.1	3.8e-68	77.53	PREDICTED: cytochrome c oxidase subunit 5b-1, mitochondrial [Cucumis melo] >KAA0...	[more]
XP_022956147.1	6.5e-68	75.72	cytochrome c oxidase subunit 5b-1, mitochondrial-like [Cucurbita moschata] >XP_0...	[more]

BLAST of Sed0026786 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LW15	6.8e-52	61.02	Cytochrome c oxidase subunit 5b-1, mitochondrial OS=Arabidopsis thaliana OX=3702...	[more]
Q9SSB8	2.2e-50	60.23	Cytochrome c oxidase subunit 5b-2, mitochondrial OS=Arabidopsis thaliana OX=3702...	[more]
Q9SSS5	4.0e-28	61.29	Putative cytochrome c oxidase subunit 5b-like OS=Arabidopsis thaliana OX=3702 GN...	[more]
P29505	1.3e-07	38.10	Cytochrome c oxidase subunit 5 OS=Dictyostelium discoideum OX=44689 GN=cxeA PE=1...	[more]
P79010	8.7e-07	33.72	Cytochrome c oxidase subunit 4, mitochondrial OS=Schizosaccharomyces pombe (stra...	[more]

BLAST of Sed0026786 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYD4	7.5e-70	79.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G004280 PE=4 SV=1	[more]
A0A5A7TM92	1.9e-68	77.53	Cytochrome c oxidase subunit 5b-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3BYC3	1.9e-68	77.53	cytochrome c oxidase subunit 5b-1, mitochondrial OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A6J1IV42	3.2e-68	75.72	cytochrome c oxidase subunit 5b-1, mitochondrial-like OS=Cucurbita maxima OX=366...	[more]
A0A6J1GVI7	3.2e-68	75.72	cytochrome c oxidase subunit 5b-1, mitochondrial-like OS=Cucurbita moschata OX=3...	[more]

BLAST of Sed0026786 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15640.2	3.7e-53	61.36	Rubredoxin-like superfamily protein	[more]
AT3G15640.1	4.8e-53	61.02	Rubredoxin-like superfamily protein	[more]
AT1G80230.1	1.6e-51	60.23	Rubredoxin-like superfamily protein	[more]
AT1G52710.1	2.9e-29	61.29	Rubredoxin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002124	Cytochrome c oxidase, subunit Vb	PFAM	PF01215	COX5B	coord: 63..149 e-value: 3.2E-18 score: 65.7
IPR002124	Cytochrome c oxidase, subunit Vb	PANTHER	PTHR10122	CYTOCHROME C OXIDASE SUBUNIT 5B, MITOCHONDRIAL	coord: 1..162
IPR002124	Cytochrome c oxidase, subunit Vb	PROSITE	PS51359	COX5B_2	coord: 51..150 score: 21.593184
IPR002124	Cytochrome c oxidase, subunit Vb	CDD	cd00924	Cyt_c_Oxidase_Vb	coord: 54..148 e-value: 1.30252E-39 score: 127.8
IPR036972	Cytochrome c oxidase, subunit Vb superfamily	GENE3D	2.60.11.10	Cytochrome c oxidase, subunit Vb	coord: 53..146 e-value: 1.6E-30 score: 106.8
None	No IPR available	PANTHER	PTHR10122:SF16	SUBFAMILY NOT NAMED	coord: 1..162
None	No IPR available	SUPERFAMILY	57802	Rubredoxin-like	coord: 55..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0026786.1	Sed0026786.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006123	mitochondrial electron transport, cytochrome c to oxygen
cellular_component	GO:0005751	mitochondrial respiratory chain complex IV
cellular_component	GO:0005740	mitochondrial envelope