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Sed0026688 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSexonpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGCAACTGTCTTCTGAAAGACGGCGCGGCGGCGGCGCGGTGGGCCGGCGAGGAGTGGGACTTTCTCGCGGGGGAGTTGGAGGACGGCCGGACAGGGCTTCTGGCCGACGGCGAGAAGAAACAGAGCCACACGGCGGCGGCGGCGAGGGAGGTGAAGATTAAGATCACGAAGAGGCAGTTGGAGGAGCTGTTGGGGAAGGTGGATATTAACGAGATGTCCGTACAGCAGGTTTTGGCTCAGTTGATCGGCGTCGGCGAGCAGTTTCAAGAATCGCGCCACCGTCCCTGGCGGCCGGTGTTGCAGAGCATACCGGAAGTTGACTGA ATGGGCAACTGTCTTCTGAAAGACGGCGCGGCGGCGGCGCGGTGGGCCGGCGAGGAGTGGGACTTTCTCGCGGGGGAGTTGGAGGACGGCCGGACAGGGCTTCTGGCCGACGGCGAGAAGAAACAGAGCCACACGGCGGCGGCGGCGAGGGAGGTGAAGATTAAGATCACGAAGAGGCAGTTGGAGGAGCTGTTGGGGAAGGTGGATATTAACGAGATGTCCGTACAGCAGGTTTTGGCTCAGTTGATCGGCGTCGGCGAGCAGTTTCAAGAATCGCGCCACCGTCCCTGGCGGCCGGTGTTGCAGAGCATACCGGAAGTTGACTGA ATGGGCAACTGTCTTCTGAAAGACGGCGCGGCGGCGGCGCGGTGGGCCGGCGAGGAGTGGGACTTTCTCGCGGGGGAGTTGGAGGACGGCCGGACAGGGCTTCTGGCCGACGGCGAGAAGAAACAGAGCCACACGGCGGCGGCGGCGAGGGAGGTGAAGATTAAGATCACGAAGAGGCAGTTGGAGGAGCTGTTGGGGAAGGTGGATATTAACGAGATGTCCGTACAGCAGGTTTTGGCTCAGTTGATCGGCGTCGGCGAGCAGTTTCAAGAATCGCGCCACCGTCCCTGGCGGCCGGTGTTGCAGAGCATACCGGAAGTTGACTGA MGNCLLKDGAAAARWAGEEWDFLAGELEDGRTGLLADGEKKQSHTAAAAREVKIKITKRQLEELLGKVDINEMSVQQVLAQLIGVGEQFQESRHRPWRPVLQSIPEVD Homology
BLAST of Sed0026688 vs. NCBI nr
Match: XP_022936225.1 (uncharacterized protein LOC111442898 [Cucurbita moschata] >KAG6592042.1 hypothetical protein SDJN03_14388, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024918.1 hypothetical protein SDJN02_13738, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 162.2 bits (409), Expect = 2.6e-36 Identity = 88/108 (81.48%), Postives = 94/108 (87.04%), Query Frame = 0
BLAST of Sed0026688 vs. NCBI nr
Match: XP_022975730.1 (uncharacterized protein LOC111475920 [Cucurbita maxima]) HSP 1 Score: 159.8 bits (403), Expect = 1.3e-35 Identity = 86/108 (79.63%), Postives = 92/108 (85.19%), Query Frame = 0
BLAST of Sed0026688 vs. NCBI nr
Match: XP_023536165.1 (uncharacterized protein LOC111797410 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 158.7 bits (400), Expect = 2.9e-35 Identity = 86/108 (79.63%), Postives = 93/108 (86.11%), Query Frame = 0
BLAST of Sed0026688 vs. NCBI nr
Match: XP_038896531.1 (uncharacterized protein LOC120084782 [Benincasa hispida]) HSP 1 Score: 153.7 bits (387), Expect = 9.2e-34 Identity = 82/111 (73.87%), Postives = 89/111 (80.18%), Query Frame = 0
BLAST of Sed0026688 vs. NCBI nr
Match: KAG6607802.1 (hypothetical protein SDJN03_01144, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015198.1 hypothetical protein SDJN02_22831, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 134.8 bits (338), Expect = 4.4e-28 Identity = 77/108 (71.30%), Postives = 83/108 (76.85%), Query Frame = 0
BLAST of Sed0026688 vs. ExPASy TrEMBL
Match: A0A6J1FD17 (uncharacterized protein LOC111442898 OS=Cucurbita moschata OX=3662 GN=LOC111442898 PE=4 SV=1) HSP 1 Score: 162.2 bits (409), Expect = 1.2e-36 Identity = 88/108 (81.48%), Postives = 94/108 (87.04%), Query Frame = 0
BLAST of Sed0026688 vs. ExPASy TrEMBL
Match: A0A6J1IHJ3 (uncharacterized protein LOC111475920 OS=Cucurbita maxima OX=3661 GN=LOC111475920 PE=4 SV=1) HSP 1 Score: 159.8 bits (403), Expect = 6.2e-36 Identity = 86/108 (79.63%), Postives = 92/108 (85.19%), Query Frame = 0
BLAST of Sed0026688 vs. ExPASy TrEMBL
Match: A0A6J1CG88 (uncharacterized protein LOC111010526 OS=Momordica charantia OX=3673 GN=LOC111010526 PE=4 SV=1) HSP 1 Score: 133.3 bits (334), Expect = 6.2e-28 Identity = 74/111 (66.67%), Postives = 81/111 (72.97%), Query Frame = 0
BLAST of Sed0026688 vs. ExPASy TrEMBL
Match: A0A5D2QUV4 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A04G022400v1 PE=4 SV=1) HSP 1 Score: 102.4 bits (254), Expect = 1.2e-18 Identity = 57/121 (47.11%), Postives = 76/121 (62.81%), Query Frame = 0
BLAST of Sed0026688 vs. ExPASy TrEMBL
Match: A0A6P4LWZ9 (uncharacterized protein LOC108452348 OS=Gossypium arboreum OX=29729 GN=LOC108452348 PE=4 SV=1) HSP 1 Score: 102.4 bits (254), Expect = 1.2e-18 Identity = 57/121 (47.11%), Postives = 76/121 (62.81%), Query Frame = 0
BLAST of Sed0026688 vs. TAIR 10
Match: AT3G20340.1 (Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. ) HSP 1 Score: 68.9 bits (167), Expect = 2.8e-12 Identity = 42/117 (35.90%), Postives = 70/117 (59.83%), Query Frame = 0
BLAST of Sed0026688 vs. TAIR 10
Match: AT4G21920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20340.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 63.2 bits (152), Expect = 1.5e-10 Identity = 38/129 (29.46%), Postives = 67/129 (51.94%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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