Sed0026688 (gene) Chayote v1

Overview
NameSed0026688
Typegene
OrganismSechium edule (Chayote v1)
DescriptionLRR receptor-like serine/threonine-protein kinase GSO1-like
LocationLG04: 42705829 .. 42706155 (-)
RNA-Seq ExpressionSed0026688
SyntenySed0026688
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCAACTGTCTTCTGAAAGACGGCGCGGCGGCGGCGCGGTGGGCCGGCGAGGAGTGGGACTTTCTCGCGGGGGAGTTGGAGGACGGCCGGACAGGGCTTCTGGCCGACGGCGAGAAGAAACAGAGCCACACGGCGGCGGCGGCGAGGGAGGTGAAGATTAAGATCACGAAGAGGCAGTTGGAGGAGCTGTTGGGGAAGGTGGATATTAACGAGATGTCCGTACAGCAGGTTTTGGCTCAGTTGATCGGCGTCGGCGAGCAGTTTCAAGAATCGCGCCACCGTCCCTGGCGGCCGGTGTTGCAGAGCATACCGGAAGTTGACTGA

mRNA sequence

ATGGGCAACTGTCTTCTGAAAGACGGCGCGGCGGCGGCGCGGTGGGCCGGCGAGGAGTGGGACTTTCTCGCGGGGGAGTTGGAGGACGGCCGGACAGGGCTTCTGGCCGACGGCGAGAAGAAACAGAGCCACACGGCGGCGGCGGCGAGGGAGGTGAAGATTAAGATCACGAAGAGGCAGTTGGAGGAGCTGTTGGGGAAGGTGGATATTAACGAGATGTCCGTACAGCAGGTTTTGGCTCAGTTGATCGGCGTCGGCGAGCAGTTTCAAGAATCGCGCCACCGTCCCTGGCGGCCGGTGTTGCAGAGCATACCGGAAGTTGACTGA

Coding sequence (CDS)

ATGGGCAACTGTCTTCTGAAAGACGGCGCGGCGGCGGCGCGGTGGGCCGGCGAGGAGTGGGACTTTCTCGCGGGGGAGTTGGAGGACGGCCGGACAGGGCTTCTGGCCGACGGCGAGAAGAAACAGAGCCACACGGCGGCGGCGGCGAGGGAGGTGAAGATTAAGATCACGAAGAGGCAGTTGGAGGAGCTGTTGGGGAAGGTGGATATTAACGAGATGTCCGTACAGCAGGTTTTGGCTCAGTTGATCGGCGTCGGCGAGCAGTTTCAAGAATCGCGCCACCGTCCCTGGCGGCCGGTGTTGCAGAGCATACCGGAAGTTGACTGA

Protein sequence

MGNCLLKDGAAAARWAGEEWDFLAGELEDGRTGLLADGEKKQSHTAAAAREVKIKITKRQLEELLGKVDINEMSVQQVLAQLIGVGEQFQESRHRPWRPVLQSIPEVD
Homology
BLAST of Sed0026688 vs. NCBI nr
Match: XP_022936225.1 (uncharacterized protein LOC111442898 [Cucurbita moschata] >KAG6592042.1 hypothetical protein SDJN03_14388, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024918.1 hypothetical protein SDJN02_13738, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 162.2 bits (409), Expect = 2.6e-36
Identity = 88/108 (81.48%), Postives = 94/108 (87.04%), Query Frame = 0

Query: 1   MGNCLLKDGAAAARWAGEEWDFLAGELEDGRTGLLADGEKKQSHTAAAAREVKIKITKRQ 60
           MGNCL +DG AAA+WAGEEWDFLA E +DGR GLL + EKK+S TAA   EVKIKITKRQ
Sbjct: 1   MGNCLRRDG-AAAQWAGEEWDFLAAE-DDGREGLLGEIEKKKSSTAAT--EVKIKITKRQ 60

Query: 61  LEELLGKVDINEMSVQQVLAQLIGVGEQFQESRHRPWRPVLQSIPEVD 109
           LEELLGKVDI EMSVQQVLAQLIGVG+QF ESRHR WRPVLQSIPEVD
Sbjct: 61  LEELLGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD 104

BLAST of Sed0026688 vs. NCBI nr
Match: XP_022975730.1 (uncharacterized protein LOC111475920 [Cucurbita maxima])

HSP 1 Score: 159.8 bits (403), Expect = 1.3e-35
Identity = 86/108 (79.63%), Postives = 92/108 (85.19%), Query Frame = 0

Query: 1   MGNCLLKDGAAAARWAGEEWDFLAGELEDGRTGLLADGEKKQSHTAAAAREVKIKITKRQ 60
           MGNCL +DG AAA+WAGEEWD LA E +DGR GLL + EKK+S T A   EVKIKITKRQ
Sbjct: 1   MGNCLRRDG-AAAQWAGEEWDLLAAE-DDGREGLLGENEKKKSSTTAT--EVKIKITKRQ 60

Query: 61  LEELLGKVDINEMSVQQVLAQLIGVGEQFQESRHRPWRPVLQSIPEVD 109
           LEELLGKVDI EMSVQQVLAQLIGVG+QF ESRHR WRPVLQSIPEVD
Sbjct: 61  LEELLGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD 104

BLAST of Sed0026688 vs. NCBI nr
Match: XP_023536165.1 (uncharacterized protein LOC111797410 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 158.7 bits (400), Expect = 2.9e-35
Identity = 86/108 (79.63%), Postives = 93/108 (86.11%), Query Frame = 0

Query: 1   MGNCLLKDGAAAARWAGEEWDFLAGELEDGRTGLLADGEKKQSHTAAAAREVKIKITKRQ 60
           MGNC+ +DG AAA+WAGEEWDFLA E +DGR GLL + EKK+S TAA   EVKIKITKRQ
Sbjct: 1   MGNCIRRDG-AAAQWAGEEWDFLAAE-DDGREGLLGEIEKKKSSTAAT--EVKIKITKRQ 60

Query: 61  LEELLGKVDINEMSVQQVLAQLIGVGEQFQESRHRPWRPVLQSIPEVD 109
           LEELLGKVDI EMSVQQVLAQLIGV +QF ESRHR WRPVLQSIPEVD
Sbjct: 61  LEELLGKVDIKEMSVQQVLAQLIGVDDQFHESRHRHWRPVLQSIPEVD 104

BLAST of Sed0026688 vs. NCBI nr
Match: XP_038896531.1 (uncharacterized protein LOC120084782 [Benincasa hispida])

HSP 1 Score: 153.7 bits (387), Expect = 9.2e-34
Identity = 82/111 (73.87%), Postives = 89/111 (80.18%), Query Frame = 0

Query: 1   MGNCLLKDGAAAARWAGEEWDFLAGELEDGRTGLLADGEKKQSHTAAA---AREVKIKIT 60
           MGNCL +D  A A+WAGE+WDFLA E  DG+ GLL DGEKK+   A A   A  VKIKIT
Sbjct: 1   MGNCLRRDD-AVAQWAGEDWDFLAAEGHDGQEGLLRDGEKKKCSAAVASTTAATVKIKIT 60

Query: 61  KRQLEELLGKVDINEMSVQQVLAQLIGVGEQFQESRHRPWRPVLQSIPEVD 109
           KRQLEELLGKVDI E+SVQQVLAQLIGVG+QF ESRHR WRPVLQ IPEVD
Sbjct: 61  KRQLEELLGKVDIKEISVQQVLAQLIGVGDQFHESRHRHWRPVLQCIPEVD 110

BLAST of Sed0026688 vs. NCBI nr
Match: KAG6607802.1 (hypothetical protein SDJN03_01144, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015198.1 hypothetical protein SDJN02_22831, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 134.8 bits (338), Expect = 4.4e-28
Identity = 77/108 (71.30%), Postives = 83/108 (76.85%), Query Frame = 0

Query: 1   MGNCLLKDGAAAARWAGEEWDFLAGELEDGRTGLLADGEKKQSHTAAAAREVKIKITKRQ 60
           MGNCL +DG AAARWAGEEWDFLA ++E        DG K+Q  TAA+  EVKIKITKRQ
Sbjct: 1   MGNCLRRDG-AAARWAGEEWDFLAADVE--------DGGKRQGSTAAST-EVKIKITKRQ 60

Query: 61  LEELLGKVDINEMSVQQVLAQLIGVGEQFQESRHRPWRPVLQSIPEVD 109
           LEELLGKVD+ EMSVQQVLAQLI  G    ESRHR WRPVLQSI EVD
Sbjct: 61  LEELLGKVDVEEMSVQQVLAQLISAG----ESRHRSWRPVLQSIREVD 94

BLAST of Sed0026688 vs. ExPASy TrEMBL
Match: A0A6J1FD17 (uncharacterized protein LOC111442898 OS=Cucurbita moschata OX=3662 GN=LOC111442898 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.2e-36
Identity = 88/108 (81.48%), Postives = 94/108 (87.04%), Query Frame = 0

Query: 1   MGNCLLKDGAAAARWAGEEWDFLAGELEDGRTGLLADGEKKQSHTAAAAREVKIKITKRQ 60
           MGNCL +DG AAA+WAGEEWDFLA E +DGR GLL + EKK+S TAA   EVKIKITKRQ
Sbjct: 1   MGNCLRRDG-AAAQWAGEEWDFLAAE-DDGREGLLGEIEKKKSSTAAT--EVKIKITKRQ 60

Query: 61  LEELLGKVDINEMSVQQVLAQLIGVGEQFQESRHRPWRPVLQSIPEVD 109
           LEELLGKVDI EMSVQQVLAQLIGVG+QF ESRHR WRPVLQSIPEVD
Sbjct: 61  LEELLGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD 104

BLAST of Sed0026688 vs. ExPASy TrEMBL
Match: A0A6J1IHJ3 (uncharacterized protein LOC111475920 OS=Cucurbita maxima OX=3661 GN=LOC111475920 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 6.2e-36
Identity = 86/108 (79.63%), Postives = 92/108 (85.19%), Query Frame = 0

Query: 1   MGNCLLKDGAAAARWAGEEWDFLAGELEDGRTGLLADGEKKQSHTAAAAREVKIKITKRQ 60
           MGNCL +DG AAA+WAGEEWD LA E +DGR GLL + EKK+S T A   EVKIKITKRQ
Sbjct: 1   MGNCLRRDG-AAAQWAGEEWDLLAAE-DDGREGLLGENEKKKSSTTAT--EVKIKITKRQ 60

Query: 61  LEELLGKVDINEMSVQQVLAQLIGVGEQFQESRHRPWRPVLQSIPEVD 109
           LEELLGKVDI EMSVQQVLAQLIGVG+QF ESRHR WRPVLQSIPEVD
Sbjct: 61  LEELLGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD 104

BLAST of Sed0026688 vs. ExPASy TrEMBL
Match: A0A6J1CG88 (uncharacterized protein LOC111010526 OS=Momordica charantia OX=3673 GN=LOC111010526 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 6.2e-28
Identity = 74/111 (66.67%), Postives = 81/111 (72.97%), Query Frame = 0

Query: 1   MGNCLLKDGAAAARWAGEEWDFLAGELEDGRTGLLADGEKKQSHTA---AAAREVKIKIT 60
           MGNCL +DG AA RWAGEEW FLA              E+KQ   A   AAA EVKIKIT
Sbjct: 1   MGNCLRRDG-AAERWAGEEWGFLA--------------EEKQGSAAAPTAAATEVKIKIT 60

Query: 61  KRQLEELLGKVDINEMSVQQVLAQLIGVGEQFQESRHRPWRPVLQSIPEVD 109
           K+QLEELLGK D+  +SVQQVLAQLI VG+QF ESRHRPWRPVLQSIPE+D
Sbjct: 61  KKQLEELLGKADVKGLSVQQVLAQLIAVGDQFHESRHRPWRPVLQSIPEMD 96

BLAST of Sed0026688 vs. ExPASy TrEMBL
Match: A0A5D2QUV4 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A04G022400v1 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.2e-18
Identity = 57/121 (47.11%), Postives = 76/121 (62.81%), Query Frame = 0

Query: 1   MGNCLLKDGAAAARWAGEEWDFLAGEL--EDG-------RTGLLADGEKKQ----SHTAA 60
           MGNCL     ++ +WAG++W   A +   +DG         G++ D  +K     + +  
Sbjct: 1   MGNCLRHQ--SSTQWAGDDWGTTAADYGDDDGFSDIKTKEKGIVGDHHQKDGFITTSSTP 60

Query: 61  AAREVKIKITKRQLEELLGKVDINEMSVQQVLAQLIGVGEQFQESRHRPWRPVLQSIPEV 109
              EVK+KITK+QLEELLG+VD+ E+SVQQVLAQLI V  QF E+  R WRP LQSIPEV
Sbjct: 61  TVHEVKVKITKKQLEELLGRVDVKELSVQQVLAQLINVSNQFDETNQRSWRPALQSIPEV 119

BLAST of Sed0026688 vs. ExPASy TrEMBL
Match: A0A6P4LWZ9 (uncharacterized protein LOC108452348 OS=Gossypium arboreum OX=29729 GN=LOC108452348 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.2e-18
Identity = 57/121 (47.11%), Postives = 76/121 (62.81%), Query Frame = 0

Query: 1   MGNCLLKDGAAAARWAGEEWDFLAGEL--EDG-------RTGLLADGEKKQ----SHTAA 60
           MGNCL     ++ +WAG++W   A +   +DG         G++ D  +K     + +  
Sbjct: 1   MGNCLRHQ--SSTQWAGDDWGTTAADYGDDDGFSDIKTKEKGIVGDHHQKDGFITTSSTP 60

Query: 61  AAREVKIKITKRQLEELLGKVDINEMSVQQVLAQLIGVGEQFQESRHRPWRPVLQSIPEV 109
              EVK+KITK+QLEELLG+VD+ E+SVQQVLAQLI V  QF E+  R WRP LQSIPEV
Sbjct: 61  TVHEVKVKITKKQLEELLGRVDVKELSVQQVLAQLINVSNQFDETNQRSWRPALQSIPEV 119

BLAST of Sed0026688 vs. TAIR 10
Match: AT3G20340.1 (Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. )

HSP 1 Score: 68.9 bits (167), Expect = 2.8e-12
Identity = 42/117 (35.90%), Postives = 70/117 (59.83%), Query Frame = 0

Query: 1   MGNCLLKDGAAAARWAGEEWD-FLAGELEDGR--TGLLADGE----KKQSHTAAAAREVK 60
           MGNCL  +  +   WAGE+WD F+  + ED    +    DG+     + S ++  + E+K
Sbjct: 1   MGNCLRHE--SEMHWAGEDWDEFITEDEEDHHYSSKTTRDGKPVIVTRDSKSSVPSHEIK 60

Query: 61  IKITKRQLEELLGKVDINEMSVQQ--VLAQLIGVGEQFQESRHRPWRPVLQSIPEVD 109
           I++TK+QL +LL KV++++++ QQ      ++      + ++ R WRPVLQSIPEV+
Sbjct: 61  IRLTKKQLHDLLSKVNVHDLTFQQQTFSCPILNNRGYEEANQQRLWRPVLQSIPEVN 115

BLAST of Sed0026688 vs. TAIR 10
Match: AT4G21920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20340.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-10
Identity = 38/129 (29.46%), Postives = 67/129 (51.94%), Query Frame = 0

Query: 1   MGNCLLKDGAAAARWAGEEWDFLAGELEDGRTGLL----ADGEK----------KQSHTA 60
           MGNC+         W+G++           R+ ++     DGEK            S ++
Sbjct: 1   MGNCICVTEKTTTSWSGDDNGSYNKRRRRRRSTVVHDDNDDGEKLLGETSNVTSTSSSSS 60

Query: 61  AAAREVKIKITKRQLEELLGKVDINEMSVQQVLAQL-------IGVGEQFQESRHRPWRP 109
           +  RE+KI+ITK++LE+L+  + +  ++ +++L++L       IG       + H+PW+P
Sbjct: 61  SERREIKIRITKKELEDLMRNIGLKSLTAEEILSKLIFEGGDQIGFSAVDVTNHHQPWKP 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022936225.12.6e-3681.48uncharacterized protein LOC111442898 [Cucurbita moschata] >KAG6592042.1 hypothet... [more]
XP_022975730.11.3e-3579.63uncharacterized protein LOC111475920 [Cucurbita maxima][more]
XP_023536165.12.9e-3579.63uncharacterized protein LOC111797410 [Cucurbita pepo subsp. pepo][more]
XP_038896531.19.2e-3473.87uncharacterized protein LOC120084782 [Benincasa hispida][more]
KAG6607802.14.4e-2871.30hypothetical protein SDJN03_01144, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1FD171.2e-3681.48uncharacterized protein LOC111442898 OS=Cucurbita moschata OX=3662 GN=LOC1114428... [more]
A0A6J1IHJ36.2e-3679.63uncharacterized protein LOC111475920 OS=Cucurbita maxima OX=3661 GN=LOC111475920... [more]
A0A6J1CG886.2e-2866.67uncharacterized protein LOC111010526 OS=Momordica charantia OX=3673 GN=LOC111010... [more]
A0A5D2QUV41.2e-1847.11Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A04G022400v1 P... [more]
A0A6P4LWZ91.2e-1847.11uncharacterized protein LOC108452348 OS=Gossypium arboreum OX=29729 GN=LOC108452... [more]
Match NameE-valueIdentityDescription
AT3G20340.12.8e-1235.90Expression of the gene is downregulated in the presence of paraquat, an inducer ... [more]
AT4G21920.11.5e-1029.46unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33647OS01G0793900 PROTEINcoord: 1..107
NoneNo IPR availablePANTHERPTHR33647:SF5OS01G0793900 PROTEINcoord: 1..107

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0026688.1Sed0026688.1mRNA