Sed0026655 (gene) Chayote v1

Overview


Name	Sed0026655
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Protein of unknown function (DUF3511)
Location	LG04: 32267573 .. 32267827 (-)
RNA-Seq Expression	Sed0026655
Synteny	Sed0026655

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGGGAGAGAGAGAAGAGGTGAGAATAAAAAGCGGTTTCCGGTGAAGAAAATGGTGTCGAGCACGGCGGCGTGGAACACAAACGGGCAATTCCACGACGGTTCGAACGGCGGCGACGATGAGCCGGAGGTGAAAAGGCAGCGGCGGATCGCCAAGTACCAGACCTACACGGCGGAAGCCAATTTTAAAGAGTCCGTTAGGAGTGGGATTCGGTGGATTAAGATCAAGTGGAGTGACCTTCGTGGTTATTGA

mRNA sequence

ATGGGTGGGAGAGAGAGAAGAGGTGAGAATAAAAAGCGGTTTCCGGTGAAGAAAATGGTGTCGAGCACGGCGGCGTGGAACACAAACGGGCAATTCCACGACGGTTCGAACGGCGGCGACGATGAGCCGGAGGTGAAAAGGCAGCGGCGGATCGCCAAGTACCAGACCTACACGGCGGAAGCCAATTTTAAAGAGTCCGTTAGGAGTGGGATTCGGTGGATTAAGATCAAGTGGAGTGACCTTCGTGGTTATTGA

Coding sequence (CDS)

ATGGGTGGGAGAGAGAGAAGAGGTGAGAATAAAAAGCGGTTTCCGGTGAAGAAAATGGTGTCGAGCACGGCGGCGTGGAACACAAACGGGCAATTCCACGACGGTTCGAACGGCGGCGACGATGAGCCGGAGGTGAAAAGGCAGCGGCGGATCGCCAAGTACCAGACCTACACGGCGGAAGCCAATTTTAAAGAGTCCGTTAGGAGTGGGATTCGGTGGATTAAGATCAAGTGGAGTGACCTTCGTGGTTATTGA

Protein sequence

MGGRERRGENKKRFPVKKMVSSTAAWNTNGQFHDGSNGGDDEPEVKRQRRIAKYQTYTAEANFKESVRSGIRWIKIKWSDLRGY

Homology

[Close]

BLAST of Sed0026655 vs. NCBI nr
Match: KGN47400.1 (hypothetical protein Csa_023055 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 5.9e-12
Identity = 42/83 (50.60%), Postives = 52/83 (62.65%), Query Frame = 0


Query: 2  GGRERRGENKKRFPVKKMVSSTAAWNTNGQFHDGS---NGGDDEPEVKRQRRIAKYQTYT 61
          G RER G  K         ++  AWNT+   H GS   + G DEPEVKRQRRIAKY+ Y 
Sbjct: 5  GNRERGGVLKSPCRSDTYTAAPTAWNTHSHLHGGSSSVSNGHDEPEVKRQRRIAKYKAYA 64

Query: 62 AEANFKESVRSGIRWIKIKWSDL 82
           E+  K S+RSGIRW+KIK ++L
Sbjct: 65 VESKLKSSLRSGIRWVKIKCNEL 87

[Close]

BLAST of Sed0026655 vs. NCBI nr
Match: KAG7026338.1 (hypothetical protein SDJN02_12839, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 79.3 bits (194), Expect = 1.7e-11
Identity = 41/76 (53.95%), Postives = 51/76 (67.11%), Query Frame = 0


Query: 9  ENKKRFPVKKMVSSTAAWNTNGQFHDG---SNGGDDEPEVKRQRRIAKYQTYTAEANFKE 68
          EN+++FP     + TAA N +   H G   S GG DE EVKRQ+RIAKY+ Y  E+ FK 
Sbjct: 26 ENQQQFP----AAQTAAGNRHSHLHGGSTFSKGGSDESEVKRQKRIAKYKAYAVESKFKA 85

Query: 69 SVRSGIRWIKIKWSDL 82
          S+RSGIRW+KIK  DL
Sbjct: 86 SIRSGIRWVKIKCGDL 97

[Close]

BLAST of Sed0026655 vs. NCBI nr
Match: XP_022138799.1 (uncharacterized protein LOC111009876 [Momordica charantia])

HSP 1 Score: 75.1 bits (183), Expect = 3.2e-10
Identity = 43/84 (51.19%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 3   GRERRGENK--KRFPVKKMVSSTAAW-NTNGQFHDGS--NGGDDEPEVKRQRRIAKYQTY 62
           G E  G ++  +RFP        AAW NT+G  H GS  +GG DEPE KRQRRIAKY+ Y
Sbjct: 25  GNEMNGRSQVNQRFP--------AAWNNTHGHMHGGSSFSGGYDEPEAKRQRRIAKYKAY 84

Query: 63  TAEANFKESVRSGIRWIKIKWSDL 82
             E+  K S R+GIRW+KIK +D+
Sbjct: 85  AVESKLKSSFRNGIRWVKIKCNDI 100

[Close]

BLAST of Sed0026655 vs. NCBI nr
Match: TYK02938.1 (hypothetical protein E5676_scaffold46G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 2.3e-08
Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 17 KKMVSSTAAWNTNGQFHDGSNGGDDEPEVKRQRRIAKYQTYTAEANFKESVRSGIRWIKI 76
          ++  ++  AWNT+       + G DE EVKRQRRIAKY+ Y  E+  K S+R+GIRW+KI
Sbjct: 30 QRFTAAPTAWNTS-----SVSNGHDEQEVKRQRRIAKYKAYAVESKLKSSLRNGIRWVKI 89

Query: 77 KWSDL 82
          K+S+L
Sbjct: 90 KYSEL 89

[Close]

BLAST of Sed0026655 vs. NCBI nr
Match: KAG6593998.1 (hypothetical protein SDJN03_13474, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 65.5 bits (158), Expect = 2.6e-07
Identity = 35/67 (52.24%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 9  ENKKRFPVKKMVSSTAAWNTNGQFHDG---SNGGDDEPEVKRQRRIAKYQTYTAEANFKE 68
          EN+++FP     + TAA N +   H G   S GG DE EVKRQ+RIAKY+ Y  E+ FK 
Sbjct: 26 ENQQQFP----AAQTAAGNRHSHLHGGSTFSKGGSDESEVKRQKRIAKYKAYAVESKFKA 85

Query: 69 SVRSGIR 73
          S+RSGIR
Sbjct: 86 SIRSGIR 88

[Close]

BLAST of Sed0026655 vs. ExPASy TrEMBL
Match: A0A0A0KCE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G312030 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.8e-12
Identity = 42/83 (50.60%), Postives = 52/83 (62.65%), Query Frame = 0


Query: 2  GGRERRGENKKRFPVKKMVSSTAAWNTNGQFHDGS---NGGDDEPEVKRQRRIAKYQTYT 61
          G RER G  K         ++  AWNT+   H GS   + G DEPEVKRQRRIAKY+ Y 
Sbjct: 5  GNRERGGVLKSPCRSDTYTAAPTAWNTHSHLHGGSSSVSNGHDEPEVKRQRRIAKYKAYA 64

Query: 62 AEANFKESVRSGIRWIKIKWSDL 82
           E+  K S+RSGIRW+KIK ++L
Sbjct: 65 VESKLKSSLRSGIRWVKIKCNEL 87

[Close]

BLAST of Sed0026655 vs. ExPASy TrEMBL
Match: A0A6J1CB45 (uncharacterized protein LOC111009876 OS=Momordica charantia OX=3673 GN=LOC111009876 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.6e-10
Identity = 43/84 (51.19%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 3   GRERRGENK--KRFPVKKMVSSTAAW-NTNGQFHDGS--NGGDDEPEVKRQRRIAKYQTY 62
           G E  G ++  +RFP        AAW NT+G  H GS  +GG DEPE KRQRRIAKY+ Y
Sbjct: 25  GNEMNGRSQVNQRFP--------AAWNNTHGHMHGGSSFSGGYDEPEAKRQRRIAKYKAY 84

Query: 63  TAEANFKESVRSGIRWIKIKWSDL 82
             E+  K S R+GIRW+KIK +D+
Sbjct: 85  AVESKLKSSFRNGIRWVKIKCNDI 100

[Close]

BLAST of Sed0026655 vs. ExPASy TrEMBL
Match: A0A5D3BVC0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00180 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.1e-08
Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 17 KKMVSSTAAWNTNGQFHDGSNGGDDEPEVKRQRRIAKYQTYTAEANFKESVRSGIRWIKI 76
          ++  ++  AWNT+       + G DE EVKRQRRIAKY+ Y  E+  K S+R+GIRW+KI
Sbjct: 30 QRFTAAPTAWNTS-----SVSNGHDEQEVKRQRRIAKYKAYAVESKLKSSLRNGIRWVKI 89

Query: 77 KWSDL 82
          K+S+L
Sbjct: 90 KYSEL 89

[Close]

BLAST of Sed0026655 vs. ExPASy TrEMBL
Match: A0A2U1QMU4 (Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA000850 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.2e-06
Identity = 33/73 (45.21%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 13  RFPVKKMVSSTAAWNTNGQFHDGSNGGDDEPEVKRQRRIAKYQTYTAEANFKESVRSGIR 72
           R PV+   SS+  W           GG  +PE KR++RIAKY+ YT E   K S R+GIR
Sbjct: 232 RSPVRTSTSSSRPW-----------GGLSDPESKRRKRIAKYKAYTIEGRVKASFRNGIR 291

Query: 73  WIKIKWSD-LRGY 85
           WIK K S+ + GY
Sbjct: 292 WIKSKCSEFIHGY 293

[Close]

BLAST of Sed0026655 vs. ExPASy TrEMBL
Match: A0A166HG98 (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_002871 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.2e-05
Identity = 28/50 (56.00%), Postives = 38/50 (76.00%), Query Frame = 0


Query: 36  SNGGDDEPEVKRQRRIAKYQTYTAEANFKESVRSGIRWIKIKWSD-LRGY 85
           S+ G ++PE+KR++RIAKY+ YT E  FK SVR+G RWIK K S+ + GY
Sbjct: 57  SSWGFNDPEMKRKKRIAKYKVYTIEGRFKASVRNGFRWIKNKCSEFIHGY 106

[Close]

BLAST of Sed0026655 vs. TAIR 10
Match: AT3G05725.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 49.7 bits (117), Expect = 1.4e-06
Identity = 26/70 (37.14%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 12  KRFPVKKMVSSTAAWNTNGQFHDGSNGGDDEPEVKRQRRIAKYQTYTAEANFKESVRSGI 71
           K  PV+   SS+ +    G ++D        PE+KR+RR+AKY+ Y+AE   K ++R   
Sbjct: 59  KDMPVRPRRSSSHSTLFKGWWND--------PEIKRKRRVAKYKLYSAEGKMKITLRKSY 118

Query: 72  RWIKIKWSDL 82
           +WIKI+ S +
Sbjct: 119 KWIKIQCSKI 120

[Close]

BLAST of Sed0026655 vs. TAIR 10
Match: AT2G47480.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 46.6 bits (109), Expect = 1.1e-05
Identity = 19/40 (47.50%), Postives = 29/40 (72.50%), Query Frame = 0


Query: 38  GGDDEPEVKRQRRIAKYQTYTAEANFKESVRSGIRWIKIK 78
           GG  + E+KR++RIA+Y+ YT E   K ++++G RWIK K
Sbjct: 63  GGLSDAEMKRKKRIARYKAYTVEGKVKSTLKNGFRWIKNK 102

The following BLAST results are available for this feature:

BLAST of Sed0026655 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47400.1	5.9e-12	50.60	hypothetical protein Csa_023055 [Cucumis sativus]	[more]
KAG7026338.1	1.7e-11	53.95	hypothetical protein SDJN02_12839, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022138799.1	3.2e-10	51.19	uncharacterized protein LOC111009876 [Momordica charantia]	[more]
TYK02938.1	2.3e-08	49.23	hypothetical protein E5676_scaffold46G00180 [Cucumis melo var. makuwa]	[more]
KAG6593998.1	2.6e-07	52.24	hypothetical protein SDJN03_13474, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Sed0026655 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0026655 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCE9	2.8e-12	50.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G312030 PE=4 SV=1	[more]
A0A6J1CB45	1.6e-10	51.19	uncharacterized protein LOC111009876 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A5D3BVC0	1.1e-08	49.23	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A2U1QMU4	5.2e-06	45.21	Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA000850 PE=4 SV=1	[more]
A0A166HG98	1.2e-05	56.00	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_002871 ...	[more]

BLAST of Sed0026655 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05725.1	1.4e-06	37.14	Protein of unknown function (DUF3511)	[more]
AT2G47480.1	1.1e-05	47.50	Protein of unknown function (DUF3511)	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021899	Protein of unknown function DUF3511	PFAM	PF12023	DUF3511	coord: 41..81 e-value: 6.1E-17 score: 61.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45
None	No IPR available	PANTHER	PTHR33193	DOMAIN PROTEIN, PUTATIVE (DUF3511)-RELATED	coord: 9..84
None	No IPR available	PANTHER	PTHR33193:SF30	SUBFAMILY NOT NAMED	coord: 9..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0026655.1	Sed0026655.1	mRNA