Sed0026637 (gene) Chayote v1

Overview


Name	Sed0026637
Type	gene
Organism	Sechium edule (Chayote v1)
Description	HTH myb-type domain-containing protein
Location	LG01: 70957301 .. 70957884 (+)
RNA-Seq Expression	Sed0026637
Synteny	Sed0026637

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAAAATAAAAAAATAAAAAAATAAAATAAAAACCCCAATTCATTTCTCTATCTTCCTTTTTCTTTCATTCCTCCAAATTTGTGATAACTTCTGTCCTCAACTGCAAAAAACACCACCCCCCCCTTCATCTCTCTCAGTGATCTAAGCCTTCAAAATGAAGGTTTTAGGGTTTAGTTTGTGGAATTGTCAATTCTCAAGCAGGCTTGGGAACAGGATTGCAAATTCTGGGTCTTCAATTTCTCATGTGGTTGATCCCAAAAAGCCTCCTTTGAGCTGTTCATCTTCTTTCAGACACTTGGTTTTGAAGCTCAAATCTCAGTGGAAGCACAACTTTAGATGGCAAAACAGAACTGTTCAGTACAGCTATGATCTTCAAAGCTATTCTCTTAACTTTGATGATGGTTTGTTTCATTGAATTTCAATTTTAATGTTTTCTCTGTTTTTGTGTTCCCTTTTCTCTCCATACCCATTTCTGTAAATTGTGAATTAATCAAGGGTCTATGATGGGTCCTTGCCAAAAATAATAATAAAACCATAAAATGGGTCTGTTTTTGCAATTTTTTTTTTGTTCATGTAATTAGC

mRNA sequence

CAAAAAATAAAAAAATAAAAAAATAAAATAAAAACCCCAATTCATTTCTCTATCTTCCTTTTTCTTTCATTCCTCCAAATTTGTGATAACTTCTGTCCTCAACTGCAAAAAACACCACCCCCCCCTTCATCTCTCTCAGTGATCTAAGCCTTCAAAATGAAGGTTTTAGGGTTTAGTTTGTGGAATTGTCAATTCTCAAGCAGGCTTGGGAACAGGATTGCAAATTCTGGGTCTTCAATTTCTCATGTGGTTGATCCCAAAAAGCCTCCTTTGAGCTGTTCATCTTCTTTCAGACACTTGGTTTTGAAGCTCAAATCTCAGTGGAAGCACAACTTTAGATGGCAAAACAGAACTGTTCAGTACAGCTATGATCTTCAAAGCTATTCTCTTAACTTTGATGATGGTTTGTTTCATTGAATTTCAATTTTAATGTTTTCTCTGTTTTTGTGTTCCCTTTTCTCTCCATACCCATTTCTGTAAATTGTGAATTAATCAAGGGTCTATGATGGGTCCTTGCCAAAAATAATAATAAAACCATAAAATGGGTCTGTTTTTGCAATTTTTTTTTTGTTCATGTAATTAGC

Coding sequence (CDS)

ATGAAGGTTTTAGGGTTTAGTTTGTGGAATTGTCAATTCTCAAGCAGGCTTGGGAACAGGATTGCAAATTCTGGGTCTTCAATTTCTCATGTGGTTGATCCCAAAAAGCCTCCTTTGAGCTGTTCATCTTCTTTCAGACACTTGGTTTTGAAGCTCAAATCTCAGTGGAAGCACAACTTTAGATGGCAAAACAGAACTGTTCAGTACAGCTATGATCTTCAAAGCTATTCTCTTAACTTTGATGATGGTTTGTTTCATTGA

Protein sequence

MKVLGFSLWNCQFSSRLGNRIANSGSSISHVVDPKKPPLSCSSSFRHLVLKLKSQWKHNFRWQNRTVQYSYDLQSYSLNFDDGLFH

Homology

[Close]

BLAST of Sed0026637 vs. NCBI nr
Match: KAG6606355.1 (hypothetical protein SDJN03_03672, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139.8 bits (351), Expect = 1.1e-29
Identity = 71/86 (82.56%), Postives = 73/86 (84.88%), Query Frame = 0


Query: 1  MKVLGFSLWNCQFSSRLGNRIANSGSSISHVVDPKKPPLSCSSSFRHLVLKLKSQWKHNF 60
          MKVLGFSLW  QF  RLGNRIANSGSSIS+V D K PPLSCSSS RHL+LKLK QWKHN 
Sbjct: 1  MKVLGFSLWKWQF-LRLGNRIANSGSSISYVGDSKTPPLSCSSSLRHLILKLKYQWKHNL 60

Query: 61 RWQNRTVQYSYDLQSYSLNFDDGLFH 87
          R Q RTVQYSYDLQSYSLNFDDGL H
Sbjct: 61 RLQKRTVQYSYDLQSYSLNFDDGLLH 85

[Close]

BLAST of Sed0026637 vs. NCBI nr
Match: KGN58293.1 (hypothetical protein Csa_017624 [Cucumis sativus])

HSP 1 Score: 119.4 bits (298), Expect = 1.5e-23
Identity = 66/95 (69.47%), Postives = 71/95 (74.74%), Query Frame = 0


Query: 1  MKVLGFSLWNCQFSSRLGNRIANSGSSISH----VVDPKKPPLSC----SSSFRHLVLKL 60
          MK LGFSLW  QF  +LGNRIANSGSS S     V D +KPP  C    S SF+HL+LKL
Sbjct: 1  MKFLGFSLWKWQF-MKLGNRIANSGSSSSSIPYVVSDTQKPPCFCCSSSSPSFKHLILKL 60

Query: 61 KSQWK-HNFRWQNRTVQYSYDLQSYSLNFDDGLFH 87
          KSQWK HN RWQN TV+YSYDLQSYSLNFDDGL H
Sbjct: 61 KSQWKHHNLRWQNSTVRYSYDLQSYSLNFDDGLLH 94

[Close]

BLAST of Sed0026637 vs. NCBI nr
Match: KAB1212066.1 (hypothetical protein CJ030_MR5G024638 [Morella rubra])

HSP 1 Score: 70.9 bits (172), Expect = 6.2e-09
Identity = 40/88 (45.45%), Postives = 50/88 (56.82%), Query Frame = 0


Query: 1  MKVLGFSLWNCQFSSRLGNRIANSGSSISHVVDPKKPPLSC---SSSFRHLVLKLKSQWK 60
          MK+   S        +L  RIA++GS+++ V   ++  L C   S+  R LV K KS WK
Sbjct: 1  MKISSISSLRRMEFLKLRKRIASTGSAVTVVSAKRRALLDCCRGSNLLRQLVWKFKSGWK 60

Query: 61 HNFRWQNRTVQYSYDLQSYSLNFDDGLF 86
           N  WQ    QYSYDL SYSLNFDDG F
Sbjct: 61 QNLGWQRSKAQYSYDLHSYSLNFDDGFF 88

[Close]

BLAST of Sed0026637 vs. NCBI nr
Match: KAE7997876.1 (hypothetical protein FH972_002472 [Carpinus fangiana])

HSP 1 Score: 68.6 bits (166), Expect = 3.1e-08
Identity = 42/82 (51.22%), Postives = 48/82 (58.54%), Query Frame = 0


Query: 7  SLWNCQFSSRLGNRIANSGSSISHVVDPKKPPLSC---SSSFRHLVLKLKSQWKHNFRWQ 66
          SL   QF  +LG RIA+SG S +     ++  L C   S + R LV K KSQWK    WQ
Sbjct: 8  SLRRIQF-LQLGKRIASSGPSATLGSVKRRRLLDCCHGSYALRQLVGKFKSQWKQTLGWQ 67

Query: 67 NRTVQYSYDLQSYSLNFDDGLF 86
             VQYSYD  SYSLNFDDG F
Sbjct: 68 RSRVQYSYDFHSYSLNFDDGFF 88

[Close]

BLAST of Sed0026637 vs. NCBI nr
Match: KAF3967419.1 (hypothetical protein CMV_008585 [Castanea mollissima])

HSP 1 Score: 67.8 bits (164), Expect = 5.3e-08
Identity = 37/74 (50.00%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 16 RLGNRIANSGSSISHVVDPKKPPLSC---SSSFRHLVLKLKSQWKHNFRWQNRTVQYSYD 75
          +L  RIA++GS  + +   ++ PL C   S   R LV KLKSQWK     Q  + QYSYD
Sbjct: 16 KLSKRIASAGSGFTLLSGKRRAPLDCCHGSYVLRQLVWKLKSQWKQALNQQRSSAQYSYD 75

Query: 76 LQSYSLNFDDGLFH 87
          L SYSLNFDDG  H
Sbjct: 76 LHSYSLNFDDGSPH 89

[Close]

BLAST of Sed0026637 vs. ExPASy TrEMBL
Match: A0A0A0L8W7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G608720 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 7.4e-24
Identity = 66/95 (69.47%), Postives = 71/95 (74.74%), Query Frame = 0


Query: 1  MKVLGFSLWNCQFSSRLGNRIANSGSSISH----VVDPKKPPLSC----SSSFRHLVLKL 60
          MK LGFSLW  QF  +LGNRIANSGSS S     V D +KPP  C    S SF+HL+LKL
Sbjct: 1  MKFLGFSLWKWQF-MKLGNRIANSGSSSSSIPYVVSDTQKPPCFCCSSSSPSFKHLILKL 60

Query: 61 KSQWK-HNFRWQNRTVQYSYDLQSYSLNFDDGLFH 87
          KSQWK HN RWQN TV+YSYDLQSYSLNFDDGL H
Sbjct: 61 KSQWKHHNLRWQNSTVRYSYDLQSYSLNFDDGLLH 94

[Close]

BLAST of Sed0026637 vs. ExPASy TrEMBL
Match: A0A2N9IXX4 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57087 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.7e-10
Identity = 40/74 (54.05%), Postives = 49/74 (66.22%), Query Frame = 0


Query: 16 RLGNRIANSGSSISHVVDPKKPPLSC---SSSFRHLVLKLKSQWKHNFRWQNRTVQYSYD 75
          +LG RIA++GS+ +   D +K  L C   S   R L+ K KSQWK  FR Q  + QYSYD
Sbjct: 5  KLGKRIASTGSASTLGSDKRKASLDCCHGSYVLRQLLWKFKSQWKQAFRRQRSSAQYSYD 64

Query: 76 LQSYSLNFDDGLFH 87
          L SYSLNFDDGLF+
Sbjct: 65 LHSYSLNFDDGLFN 78

[Close]

BLAST of Sed0026637 vs. ExPASy TrEMBL
Match: A0A6A1VJQ4 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR5G024638 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.0e-09
Identity = 40/88 (45.45%), Postives = 50/88 (56.82%), Query Frame = 0


Query: 1  MKVLGFSLWNCQFSSRLGNRIANSGSSISHVVDPKKPPLSC---SSSFRHLVLKLKSQWK 60
          MK+   S        +L  RIA++GS+++ V   ++  L C   S+  R LV K KS WK
Sbjct: 1  MKISSISSLRRMEFLKLRKRIASTGSAVTVVSAKRRALLDCCRGSNLLRQLVWKFKSGWK 60

Query: 61 HNFRWQNRTVQYSYDLQSYSLNFDDGLF 86
           N  WQ    QYSYDL SYSLNFDDG F
Sbjct: 61 QNLGWQRSKAQYSYDLHSYSLNFDDGFF 88

[Close]

BLAST of Sed0026637 vs. ExPASy TrEMBL
Match: A0A5N6QEZ1 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_002472 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.5e-08
Identity = 42/82 (51.22%), Postives = 48/82 (58.54%), Query Frame = 0


Query: 7  SLWNCQFSSRLGNRIANSGSSISHVVDPKKPPLSC---SSSFRHLVLKLKSQWKHNFRWQ 66
          SL   QF  +LG RIA+SG S +     ++  L C   S + R LV K KSQWK    WQ
Sbjct: 8  SLRRIQF-LQLGKRIASSGPSATLGSVKRRRLLDCCHGSYALRQLVGKFKSQWKQTLGWQ 67

Query: 67 NRTVQYSYDLQSYSLNFDDGLF 86
             VQYSYD  SYSLNFDDG F
Sbjct: 68 RSRVQYSYDFHSYSLNFDDGFF 88

[Close]

BLAST of Sed0026637 vs. ExPASy TrEMBL
Match: B9SKN8 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0542820 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.7e-07
Identity = 39/90 (43.33%), Postives = 54/90 (60.00%), Query Frame = 0


Query: 1   MKVL-GFSLWNCQFSSRLGNRIANSGSSISHVVDPKKPPLSCSSS---FRHLVLKLKSQW 60
           MK+L G S+   QF  + G RIA + S+I+      + P SC       R L+ K ++QW
Sbjct: 24  MKILSGQSVKKNQF-IKWGKRIATTESAITLGNVRNRVPFSCCCGLRVLRQLLWKFRTQW 83

Query: 61  KHNFRWQNRTVQYSYDLQSYSLNFDDGLFH 87
           K    W+  +V+YSYD+ SYSLNFDDGL+H
Sbjct: 84  KQALGWRRNSVKYSYDIHSYSLNFDDGLYH 112

The following BLAST results are available for this feature:

BLAST of Sed0026637 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6606355.1	1.1e-29	82.56	hypothetical protein SDJN03_03672, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN58293.1	1.5e-23	69.47	hypothetical protein Csa_017624 [Cucumis sativus]	[more]
KAB1212066.1	6.2e-09	45.45	hypothetical protein CJ030_MR5G024638 [Morella rubra]	[more]
KAE7997876.1	3.1e-08	51.22	hypothetical protein FH972_002472 [Carpinus fangiana]	[more]
KAF3967419.1	5.3e-08	50.00	hypothetical protein CMV_008585 [Castanea mollissima]	[more]

BLAST of Sed0026637 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0026637 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8W7	7.4e-24	69.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G608720 PE=4 SV=1	[more]
A0A2N9IXX4	4.7e-10	54.05	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57087 PE=4 SV=1	[more]
A0A6A1VJQ4	3.0e-09	45.45	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR5G024638 PE=4 SV=1	[more]
A0A5N6QEZ1	1.5e-08	51.22	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_002472 PE=4 SV=1	[more]
B9SKN8	1.7e-07	43.33	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0542820 PE=4 SV=1	[more]

BLAST of Sed0026637 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34538	EXPRESSED PROTEIN	coord: 4..84
None	No IPR available	PANTHER	PTHR34538:SF4	EXPRESSED PROTEIN	coord: 4..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0026637.1	Sed0026637.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
cellular_component	GO:0043229	intracellular organelle