Sed0026621 (gene) Chayote v1

Overview


Name	Sed0026621
Type	gene
Organism	Sechium edule (Chayote v1)
Description	BEST Arabidopsis thaliana protein match is: transcription regulators .
Location	LG10: 1268592 .. 1269857 (-)
RNA-Seq Expression	Sed0026621
Synteny	Sed0026621

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCCGGCACCTACGAATCCCTAGTAATTCATTAGACATTTTTGTTTGTTAATGTTTTTCTATTCCCTCTTATTTCTTAGGTCCGTTTGATAATCATTTGGTTTTTTATTTCTGAAATTCATCTTCTTCATGAAAGAAAGTATTAGAAACCTAACTAAATTAAAAAATTAACAATAAAAAGCCAAATGGTTATCCAATAGTTTTTGTTTTGGCCATTAATAATGAAGTCCTATGTTTATGCAGGGGAAACAGAGCAGTGCTTTCTGGAATGCTGTTATTTTCATTCACAAGCTTAAGATCAAGCTGGAAGAAATTGAGAGAGATTATTCCAATCTATTGGCCATGAAAAGAGAATACTTGAACTCAATTAAGCAACCCCATGTCTCAAAGGTCTTTCCTTTTTCTCTCTGTTAACATTTTTTTTTCTATATCCGTGAAAATCTCGGCTAGCTTGCTCACACCTCGATTATCGATGAGTTTTAATTAGTGATACTTGGCTAGCAGGAAGTGAAGGTTGAGAAGATTGGAGAAGAGTTTAAAGTGAAAGTGAGATGTGAAAAGGGAGGGGACAGATTGGTATCAGTGTTGGAGGCATTTGAGAAAATGAGACTTAATGTTGTGGAAGCTAGAGTTTCATGTACTGAATGTTTTTCCATGGAGGTCATTGTTGTAGCTGAAGATAATCAATTGCTTAATGTAACAGATATAACTGAAGCTATTAATGTAGCTATTGATTCAAAATTATCAGTTGTAAATCAACATCAGAAAGATGCTGAAATTTAGCCACTTTGCTAACCTTTCAGTTGAATGAATATGTGTTCTCTTGTGTTTTGCTTC

mRNA sequence

AGCCGGCACCTACGAATCCCTAGTAATTCATTAGACATTTTTGTTTGTTAATGTTTTTCTATTCCCTCTTATTTCTTAGGGGAAACAGAGCAGTGCTTTCTGGAATGCTGTTATTTTCATTCACAAGCTTAAGATCAAGCTGGAAGAAATTGAGAGAGATTATTCCAATCTATTGGCCATGAAAAGAGAATACTTGAACTCAATTAAGCAACCCCATGTCTCAAAGGAAGTGAAGGTTGAGAAGATTGGAGAAGAGTTTAAAGTGAAAGTGAGATGTGAAAAGGGAGGGGACAGATTGGTATCAGTGTTGGAGGCATTTGAGAAAATGAGACTTAATGTTGTGGAAGCTAGAGTTTCATGTACTGAATGTTTTTCCATGGAGGTCATTGTTGTAGCTGAAGATAATCAATTGCTTAATGTAACAGATATAACTGAAGCTATTAATGTAGCTATTGATTCAAAATTATCAGTTGTAAATCAACATCAGAAAGATGCTGAAATTTAGCCACTTTGCTAACCTTTCAGTTGAATGAATATGTGTTCTCTTGTGTTTTGCTTC

Coding sequence (CDS)

ATGAAAAGAGAATACTTGAACTCAATTAAGCAACCCCATGTCTCAAAGGAAGTGAAGGTTGAGAAGATTGGAGAAGAGTTTAAAGTGAAAGTGAGATGTGAAAAGGGAGGGGACAGATTGGTATCAGTGTTGGAGGCATTTGAGAAAATGAGACTTAATGTTGTGGAAGCTAGAGTTTCATGTACTGAATGTTTTTCCATGGAGGTCATTGTTGTAGCTGAAGATAATCAATTGCTTAATGTAACAGATATAACTGAAGCTATTAATGTAGCTATTGATTCAAAATTATCAGTTGTAAATCAACATCAGAAAGATGCTGAAATTTAG

Protein sequence

MKREYLNSIKQPHVSKEVKVEKIGEEFKVKVRCEKGGDRLVSVLEAFEKMRLNVVEARVSCTECFSMEVIVVAEDNQLLNVTDITEAINVAIDSKLSVVNQHQKDAEI

Homology

[Close]

BLAST of Sed0026621 vs. NCBI nr
Match: XP_038893157.1 (uncharacterized protein LOC120082020 [Benincasa hispida])

HSP 1 Score: 162.9 bits (411), Expect = 1.5e-36
Identity = 88/105 (83.81%), Postives = 92/105 (87.62%), Query Frame = 0


Query: 1   MKREYLNSIKQPHVSKEVKVEKIGEEFKVKVRCEKGGDRLVSVLEAFEKMRLNVVEARVS 60
           MKREYLNSIKQ H  KEVKVEK GEEFKVKVRCEKGGDRLVSVLEAFEKM LNVVEARVS
Sbjct: 61  MKREYLNSIKQFHSPKEVKVEKNGEEFKVKVRCEKGGDRLVSVLEAFEKMGLNVVEARVS 120

Query: 61  CTECFSMEVIVVAEDNQLLNVTDITEAINVAIDSKLSVVNQHQKD 106
           CTECF ME I VAE+++LLNV+DITEAINVAID KL   NQH KD
Sbjct: 121 CTECFCMEAIAVAENHRLLNVSDITEAINVAIDGKLLAGNQHHKD 165

[Close]

BLAST of Sed0026621 vs. NCBI nr
Match: XP_008439723.1 (PREDICTED: uncharacterized protein LOC103484437 [Cucumis melo] >ADN34030.1 hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 158.3 bits (399), Expect = 3.7e-35
Identity = 87/106 (82.08%), Postives = 92/106 (86.79%), Query Frame = 0


Query: 1   MKREYLNSIKQPHVSKEVKVEKIGEEFKVKVRCEKGGDRLVSVLEAFEKMRLNVVEARVS 60
           MKREYLNSIKQ H SKEVKVEK GEEF+VKVRCEKGGDRLVSVLEAFEKM LNVVEARVS
Sbjct: 61  MKREYLNSIKQFHSSKEVKVEKNGEEFRVKVRCEKGGDRLVSVLEAFEKMGLNVVEARVS 120

Query: 61  CTECFSMEVIVVAED-NQLLNVTDITEAINVAIDSKLSVVNQHQKD 106
           CTECF ME I VAED +QLLN++DIT+AINVAID KL   NQH  D
Sbjct: 121 CTECFCMEAIAVAEDHHQLLNLSDITDAINVAIDPKLLAPNQHHND 166

[Close]

BLAST of Sed0026621 vs. NCBI nr
Match: KAA0052608.1 (uncharacterized protein E6C27_scaffold120G002160 [Cucumis melo var. makuwa] >TYK13219.1 uncharacterized protein E5676_scaffold255G008340 [Cucumis melo var. makuwa])

HSP 1 Score: 158.3 bits (399), Expect = 3.7e-35
Identity = 87/106 (82.08%), Postives = 92/106 (86.79%), Query Frame = 0


Query: 1   MKREYLNSIKQPHVSKEVKVEKIGEEFKVKVRCEKGGDRLVSVLEAFEKMRLNVVEARVS 60
           MKREYLNSIKQ H SKEVKVEK GEEF+VKVRCEKGGDRLVSVLEAFEKM LNVVEARVS
Sbjct: 61  MKREYLNSIKQFHSSKEVKVEKNGEEFRVKVRCEKGGDRLVSVLEAFEKMGLNVVEARVS 120

Query: 61  CTECFSMEVIVVAED-NQLLNVTDITEAINVAIDSKLSVVNQHQKD 106
           CTECF ME I VAED +QLLN++DIT+AINVAID KL   NQH  D
Sbjct: 121 CTECFCMEAIAVAEDHHQLLNLSDITDAINVAIDPKLLAPNQHHND 166

[Close]

BLAST of Sed0026621 vs. NCBI nr
Match: XP_004134653.1 (uncharacterized protein LOC101213083 [Cucumis sativus] >KGN49320.1 hypothetical protein Csa_003445 [Cucumis sativus])

HSP 1 Score: 157.9 bits (398), Expect = 4.9e-35
Identity = 87/107 (81.31%), Postives = 92/107 (85.98%), Query Frame = 0


Query: 1   MKREYLNSIKQPHVSKEVKVEKIGEEFKVKVRCEKGGDRLVSVLEAFEKMRLNVVEARVS 60
           MKREYLNSIKQ H SKEVKVEK GEEF+VKVRCEKGGDRLVSVLEAFEKM LNVVEARVS
Sbjct: 61  MKREYLNSIKQFHSSKEVKVEKNGEEFRVKVRCEKGGDRLVSVLEAFEKMGLNVVEARVS 120

Query: 61  CTECFSMEVIVVAED-NQLLNVTDITEAINVAIDSKLSVVNQHQKDA 107
           CTECF ME   VAED +QLLN++DITEAINVAID KL   NQH  D+
Sbjct: 121 CTECFCMEATAVAEDHHQLLNLSDITEAINVAIDPKLLAPNQHHNDS 167

[Close]

BLAST of Sed0026621 vs. NCBI nr
Match: XP_022978770.1 (uncharacterized protein LOC111478631 [Cucurbita maxima])

HSP 1 Score: 153.7 bits (387), Expect = 9.2e-34
Identity = 78/105 (74.29%), Postives = 89/105 (84.76%), Query Frame = 0


Query: 1   MKREYLNSIKQPHVSKEVKVEKIGEEFKVKVRCEKGGDRLVSVLEAFEKMRLNVVEARVS 60
           MKREYLNS+KQ H  KEVKVEK+GEEF+VKVRCEKGGDRLV+VLEAF+KM LNV++A+VS
Sbjct: 61  MKREYLNSVKQIHAPKEVKVEKVGEEFRVKVRCEKGGDRLVTVLEAFDKMGLNVLQAKVS 120

Query: 61  CTECFSMEVIVVAEDNQLLNVTDITEAINVAIDSKLSVVNQHQKD 106
           C+ECFSME I VAED Q LN+ DITEAIN AID K    NQ QK+
Sbjct: 121 CSECFSMEAIAVAEDEQSLNICDITEAINAAIDGKSLAANQQQKE 165

[Close]

BLAST of Sed0026621 vs. ExPASy TrEMBL
Match: A0A5A7UBN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008340 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.8e-35
Identity = 87/106 (82.08%), Postives = 92/106 (86.79%), Query Frame = 0


Query: 1   MKREYLNSIKQPHVSKEVKVEKIGEEFKVKVRCEKGGDRLVSVLEAFEKMRLNVVEARVS 60
           MKREYLNSIKQ H SKEVKVEK GEEF+VKVRCEKGGDRLVSVLEAFEKM LNVVEARVS
Sbjct: 61  MKREYLNSIKQFHSSKEVKVEKNGEEFRVKVRCEKGGDRLVSVLEAFEKMGLNVVEARVS 120

Query: 61  CTECFSMEVIVVAED-NQLLNVTDITEAINVAIDSKLSVVNQHQKD 106
           CTECF ME I VAED +QLLN++DIT+AINVAID KL   NQH  D
Sbjct: 121 CTECFCMEAIAVAEDHHQLLNLSDITDAINVAIDPKLLAPNQHHND 166

[Close]

BLAST of Sed0026621 vs. ExPASy TrEMBL
Match: E5GC31 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.8e-35
Identity = 87/106 (82.08%), Postives = 92/106 (86.79%), Query Frame = 0


Query: 1   MKREYLNSIKQPHVSKEVKVEKIGEEFKVKVRCEKGGDRLVSVLEAFEKMRLNVVEARVS 60
           MKREYLNSIKQ H SKEVKVEK GEEF+VKVRCEKGGDRLVSVLEAFEKM LNVVEARVS
Sbjct: 61  MKREYLNSIKQFHSSKEVKVEKNGEEFRVKVRCEKGGDRLVSVLEAFEKMGLNVVEARVS 120

Query: 61  CTECFSMEVIVVAED-NQLLNVTDITEAINVAIDSKLSVVNQHQKD 106
           CTECF ME I VAED +QLLN++DIT+AINVAID KL   NQH  D
Sbjct: 121 CTECFCMEAIAVAEDHHQLLNLSDITDAINVAIDPKLLAPNQHHND 166

[Close]

BLAST of Sed0026621 vs. ExPASy TrEMBL
Match: A0A1S3B049 (uncharacterized protein LOC103484437 OS=Cucumis melo OX=3656 GN=LOC103484437 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.8e-35
Identity = 87/106 (82.08%), Postives = 92/106 (86.79%), Query Frame = 0


Query: 1   MKREYLNSIKQPHVSKEVKVEKIGEEFKVKVRCEKGGDRLVSVLEAFEKMRLNVVEARVS 60
           MKREYLNSIKQ H SKEVKVEK GEEF+VKVRCEKGGDRLVSVLEAFEKM LNVVEARVS
Sbjct: 61  MKREYLNSIKQFHSSKEVKVEKNGEEFRVKVRCEKGGDRLVSVLEAFEKMGLNVVEARVS 120

Query: 61  CTECFSMEVIVVAED-NQLLNVTDITEAINVAIDSKLSVVNQHQKD 106
           CTECF ME I VAED +QLLN++DIT+AINVAID KL   NQH  D
Sbjct: 121 CTECFCMEAIAVAEDHHQLLNLSDITDAINVAIDPKLLAPNQHHND 166

[Close]

BLAST of Sed0026621 vs. ExPASy TrEMBL
Match: A0A0A0KHW9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519710 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.4e-35
Identity = 87/107 (81.31%), Postives = 92/107 (85.98%), Query Frame = 0


Query: 1   MKREYLNSIKQPHVSKEVKVEKIGEEFKVKVRCEKGGDRLVSVLEAFEKMRLNVVEARVS 60
           MKREYLNSIKQ H SKEVKVEK GEEF+VKVRCEKGGDRLVSVLEAFEKM LNVVEARVS
Sbjct: 61  MKREYLNSIKQFHSSKEVKVEKNGEEFRVKVRCEKGGDRLVSVLEAFEKMGLNVVEARVS 120

Query: 61  CTECFSMEVIVVAED-NQLLNVTDITEAINVAIDSKLSVVNQHQKDA 107
           CTECF ME   VAED +QLLN++DITEAINVAID KL   NQH  D+
Sbjct: 121 CTECFCMEATAVAEDHHQLLNLSDITEAINVAIDPKLLAPNQHHNDS 167

[Close]

BLAST of Sed0026621 vs. ExPASy TrEMBL
Match: A0A6J1IR65 (uncharacterized protein LOC111478631 OS=Cucurbita maxima OX=3661 GN=LOC111478631 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 4.4e-34
Identity = 78/105 (74.29%), Postives = 89/105 (84.76%), Query Frame = 0


Query: 1   MKREYLNSIKQPHVSKEVKVEKIGEEFKVKVRCEKGGDRLVSVLEAFEKMRLNVVEARVS 60
           MKREYLNS+KQ H  KEVKVEK+GEEF+VKVRCEKGGDRLV+VLEAF+KM LNV++A+VS
Sbjct: 61  MKREYLNSVKQIHAPKEVKVEKVGEEFRVKVRCEKGGDRLVTVLEAFDKMGLNVLQAKVS 120

Query: 61  CTECFSMEVIVVAEDNQLLNVTDITEAINVAIDSKLSVVNQHQKD 106
           C+ECFSME I VAED Q LN+ DITEAIN AID K    NQ QK+
Sbjct: 121 CSECFSMEAIAVAEDEQSLNICDITEAINAAIDGKSLAANQQQKE 165

[Close]

BLAST of Sed0026621 vs. TAIR 10
Match: AT1G29270.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40435.1); Has 98 Blast hits to 98 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 72.8 bits (177), Expect = 1.9e-13
Identity = 42/97 (43.30%), Postives = 66/97 (68.04%), Query Frame = 0


Query: 1   MKREY----LNSIKQPHVSKEVKVEKIGEEFKVKVRCEKGGDRLVSVLEAFEKMRLNVVE 60
           ++REY    +   +  H  +EVKVEKIGE F+VK++  +G + LV++LEAFE+M LNV +
Sbjct: 52  LQREYEDLKITKKESLHQFQEVKVEKIGEMFQVKIKSPRGENNLVNILEAFEEMGLNVAQ 111

Query: 61  ARVSCTECFSMEVIVVAED-NQLLNVTDITEAINVAI 93
           AR SC + F+ME IV  +  ++L +V D+T+ +  A+
Sbjct: 112 ARASCLDSFAMEAIVAPQSKDKLCSVDDLTQTLVKAL 148

[Close]

BLAST of Sed0026621 vs. TAIR 10
Match: AT2G40435.1 (BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G56220.1); Has 289 Blast hits to 289 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 289; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 4.3e-05
Identity = 32/79 (40.51%), Postives = 47/79 (59.49%), Query Frame = 0


Query: 18  VKVEKIGEEFKVKVRCEKG-GDRLVSVLEAFEKMRLNVVEARVSCTECFSMEVI-VVAED 77
           V VE + + F + V   K     LVSVLEAFE + LNV+EAR SCT+ FS+  + +  ED
Sbjct: 71  VTVETLDKGFMINVFSGKNQPGMLVSVLEAFEDIGLNVLEARASCTDSFSLHAMGLENED 130

Query: 78  NQLLNVTDITEAINVAIDS 95
            + ++   + +A+  AI S
Sbjct: 131 GENMDAEAVKQAVTDAIRS 149

[Close]

BLAST of Sed0026621 vs. TAIR 10
Match: AT3G56220.1 (transcription regulators )

HSP 1 Score: 44.7 bits (104), Expect = 5.6e-05
Identity = 31/78 (39.74%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 18  VKVEKIGEEFKVKVRCEKG-GDRLVSVLEAFEKMRLNVVEARVSCTECFSMEVIVVA--E 77
           V VE + + F +KV   K     LV VLE FE + L+VVEARVSCT+ FS+  I  +  +
Sbjct: 71  VTVETLEKGFMIKVMSRKNEAGMLVCVLETFEDLGLDVVEARVSCTDTFSLHAIGSSNND 130

Query: 78  DNQLLNVTDITEAINVAI 93
           D   ++   + +A+  AI
Sbjct: 131 DGDCIDAEAVKQAVAEAI 148

The following BLAST results are available for this feature:

BLAST of Sed0026621 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893157.1	1.5e-36	83.81	uncharacterized protein LOC120082020 [Benincasa hispida]	[more]
XP_008439723.1	3.7e-35	82.08	PREDICTED: uncharacterized protein LOC103484437 [Cucumis melo] >ADN34030.1 hypot...	[more]
KAA0052608.1	3.7e-35	82.08	uncharacterized protein E6C27_scaffold120G002160 [Cucumis melo var. makuwa] >TYK...	[more]
XP_004134653.1	4.9e-35	81.31	uncharacterized protein LOC101213083 [Cucumis sativus] >KGN49320.1 hypothetical ...	[more]
XP_022978770.1	9.2e-34	74.29	uncharacterized protein LOC111478631 [Cucurbita maxima]	[more]

BLAST of Sed0026621 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0026621 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UBN8	1.8e-35	82.08	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
E5GC31	1.8e-35	82.08	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A1S3B049	1.8e-35	82.08	uncharacterized protein LOC103484437 OS=Cucumis melo OX=3656 GN=LOC103484437 PE=...	[more]
A0A0A0KHW9	2.4e-35	81.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519710 PE=4 SV=1	[more]
A0A6J1IR65	4.4e-34	74.29	uncharacterized protein LOC111478631 OS=Cucurbita maxima OX=3661 GN=LOC111478631...	[more]

BLAST of Sed0026621 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29270.1	1.9e-13	43.30	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G40435.1	4.3e-05	40.51	BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G5...	[more]
AT3G56220.1	5.6e-05	39.74	transcription regulators	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 18..45
None	No IPR available	PANTHER	PTHR31945	TRANSCRIPTION FACTOR SCREAM2-RELATED	coord: 6..132
None	No IPR available	PANTHER	PTHR31945:SF27	TRANSCRIPTION FACTOR BHLH35-LIKE PROTEIN	coord: 6..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0026621.1	Sed0026621.1	mRNA
Sed0026621.2	Sed0026621.2	mRNA
Sed0026621.3	Sed0026621.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding