Sed0026581 (gene) Chayote v1

Overview
NameSed0026581
Typegene
OrganismSechium edule (Chayote v1)
DescriptionDefensin-like family protein, putative
LocationLG04: 47399491 .. 47399892 (-)
RNA-Seq ExpressionSed0026581
SyntenySed0026581
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAAAGTTGGAGCAACTTTCACATGGATTCTCATTACCTTCCTTGTCTTATATTCAGGTCCAACTTTAGCACGAGTTTCTTTGAATCTTTTTAATTGTTTACGAGGTTACGAATTTGATTCCCGTTTCCACTCTTAATTGTTGTCGAATTAAAAAGAAGAAAAAAGGTCGTGAGTTTGAATTTAGAGCATCGAGACCCGAATTAGAGTGTGTGTTTTTGTTTCTACAGGAAGTTTGAATACAATCAATGGTCAAGTATGCTGCAAAGACCACAGGTTGAGGAGTTGCAAAGCAGGAGTGGATGATATATTGGATGGAAAGTGTTGGAATCACTGCATTACGGAATGTGGAAACGGAGGAAAATGCAAGCCAAACGGCGTTTGTCATTGCCCTTGTTAA

mRNA sequence

ATGGCTAAAGTTGGAGCAACTTTCACATGGATTCTCATTACCTTCCTTGTCTTATATTCAGGAAGTTTGAATACAATCAATGGTCAAGTATGCTGCAAAGACCACAGGTTGAGGAGTTGCAAAGCAGGAGTGGATGATATATTGGATGGAAAGTGTTGGAATCACTGCATTACGGAATGTGGAAACGGAGGAAAATGCAAGCCAAACGGCGTTTGTCATTGCCCTTGTTAA

Coding sequence (CDS)

ATGGCTAAAGTTGGAGCAACTTTCACATGGATTCTCATTACCTTCCTTGTCTTATATTCAGGAAGTTTGAATACAATCAATGGTCAAGTATGCTGCAAAGACCACAGGTTGAGGAGTTGCAAAGCAGGAGTGGATGATATATTGGATGGAAAGTGTTGGAATCACTGCATTACGGAATGTGGAAACGGAGGAAAATGCAAGCCAAACGGCGTTTGTCATTGCCCTTGTTAA

Protein sequence

MAKVGATFTWILITFLVLYSGSLNTINGQVCCKDHRLRSCKAGVDDILDGKCWNHCITECGNGGKCKPNGVCHCPC
Homology
BLAST of Sed0026581 vs. NCBI nr
Match: KGN66133.1 (hypothetical protein Csa_007601 [Cucumis sativus])

HSP 1 Score: 99.4 bits (246), Expect = 1.4e-17
Identity = 47/80 (58.75%), Postives = 56/80 (70.00%), Query Frame = 0

Query: 1  MAKVGATFTWILITFLVLYSGSLNTINGQVCCKDHR-LRSCKAGVDDILDGKCWNHCITE 60
          MAK+GA F+W+ + FLVLY+GS+NT N Q+CC +HR L SC  GVDD  DGKCW+HCI  
Sbjct: 1  MAKLGAIFSWVFVAFLVLYAGSMNT-NAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVG 60

Query: 61 CGNGGKCKP---NGVCHCPC 77
          C  GG CK      VCHC C
Sbjct: 61 CERGGFCKKLWYGHVCHCYC 79

BLAST of Sed0026581 vs. NCBI nr
Match: TYK10190.1 (putative defensin-like protein 20 [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 7.2e-17
Identity = 48/80 (60.00%), Postives = 53/80 (66.25%), Query Frame = 0

Query: 1  MAKVGATFTWILITFLVLYSGSLNTINGQVCCKDH-RLRSCKAGVDDILDGKCWNHCITE 60
          MAK+GA F W+ I FLVLYSGS NT N Q+CC +H  L SC+ GVDD  DGKCW HCI  
Sbjct: 1  MAKLGAIFGWVFIAFLVLYSGSKNT-NAQLCCNNHPELGSCEPGVDDASDGKCWLHCIAG 60

Query: 61 CGNGGKCK---PNGVCHCPC 77
          C  GG CK      VCHC C
Sbjct: 61 CEKGGFCKQLTDKNVCHCYC 79

BLAST of Sed0026581 vs. NCBI nr
Match: KGN66136.1 (hypothetical protein Csa_007074 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 1.6e-16
Identity = 48/80 (60.00%), Postives = 54/80 (67.50%), Query Frame = 0

Query: 1  MAKVGATFTWILITFLVLYSGSLNTINGQVCCKDH-RLRSCKAGVDDILDGKCWNHCITE 60
          MAK+GATF  + I FLVLYSGS+NT N Q+CC +H  L  C+AGVDD  DGKCW HCI  
Sbjct: 1  MAKLGATFGLVFIAFLVLYSGSMNT-NAQLCCNNHPELGECEAGVDDANDGKCWLHCIAG 60

Query: 61 CGNGGKCK---PNGVCHCPC 77
          C  GG CK      VCHC C
Sbjct: 61 CEKGGFCKHLSDKNVCHCYC 79

BLAST of Sed0026581 vs. NCBI nr
Match: TYK10191.1 (putative defensin-like protein 20 [Cucumis melo var. makuwa])

HSP 1 Score: 68.6 bits (166), Expect = 2.7e-08
Identity = 32/61 (52.46%), Postives = 35/61 (57.38%), Query Frame = 0

Query: 20  SGSLNTINGQVCCKDH-RLRSCKAGVDDILDGKCWNHCITECGNGGKCKP---NGVCHCP 77
           SG     N Q+CC +H  L SC+ GVDD  DGKCW HCI  C  GG CK      VCHC 
Sbjct: 71  SGWSKNTNAQLCCNNHPELGSCEPGVDDASDGKCWLHCIAGCEKGGFCKQLSNKNVCHCY 130

BLAST of Sed0026581 vs. NCBI nr
Match: OIT08891.1 (putative defensin-like protein 20 [Nicotiana attenuata])

HSP 1 Score: 67.0 bits (162), Expect = 7.9e-08
Identity = 34/72 (47.22%), Postives = 41/72 (56.94%), Query Frame = 0

Query: 11 ILITFLVLYSGSLNTINGQVCCKDH-RLRSCKAGVDDIL--DGKCWNHCITECGNGGKCK 70
          +L T L+L  G  N ++   CC DH  L SC  GVDD    DGKCW  C+++C  GG CK
Sbjct: 9  LLFTLLILSIGCKNIVDAAKCCMDHLELGSCVPGVDDSPEDDGKCWTFCVSDCELGGACK 68

Query: 71 PNG---VCHCPC 77
            G   VCHC C
Sbjct: 69 LEGNKHVCHCKC 80

BLAST of Sed0026581 vs. ExPASy TrEMBL
Match: A0A0A0LWJ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573030 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 7.0e-18
Identity = 47/80 (58.75%), Postives = 56/80 (70.00%), Query Frame = 0

Query: 1  MAKVGATFTWILITFLVLYSGSLNTINGQVCCKDHR-LRSCKAGVDDILDGKCWNHCITE 60
          MAK+GA F+W+ + FLVLY+GS+NT N Q+CC +HR L SC  GVDD  DGKCW+HCI  
Sbjct: 1  MAKLGAIFSWVFVAFLVLYAGSMNT-NAQLCCNNHRELGSCVPGVDDDYDGKCWHHCIVG 60

Query: 61 CGNGGKCKP---NGVCHCPC 77
          C  GG CK      VCHC C
Sbjct: 61 CERGGFCKKLWYGHVCHCYC 79

BLAST of Sed0026581 vs. ExPASy TrEMBL
Match: A0A5D3CFQ3 (Putative defensin-like protein 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003350 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.5e-17
Identity = 48/80 (60.00%), Postives = 53/80 (66.25%), Query Frame = 0

Query: 1  MAKVGATFTWILITFLVLYSGSLNTINGQVCCKDH-RLRSCKAGVDDILDGKCWNHCITE 60
          MAK+GA F W+ I FLVLYSGS NT N Q+CC +H  L SC+ GVDD  DGKCW HCI  
Sbjct: 1  MAKLGAIFGWVFIAFLVLYSGSKNT-NAQLCCNNHPELGSCEPGVDDASDGKCWLHCIAG 60

Query: 61 CGNGGKCK---PNGVCHCPC 77
          C  GG CK      VCHC C
Sbjct: 61 CEKGGFCKQLTDKNVCHCYC 79

BLAST of Sed0026581 vs. ExPASy TrEMBL
Match: A0A0A0M1N0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573060 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 7.7e-17
Identity = 48/80 (60.00%), Postives = 54/80 (67.50%), Query Frame = 0

Query: 1  MAKVGATFTWILITFLVLYSGSLNTINGQVCCKDH-RLRSCKAGVDDILDGKCWNHCITE 60
          MAK+GATF  + I FLVLYSGS+NT N Q+CC +H  L  C+AGVDD  DGKCW HCI  
Sbjct: 1  MAKLGATFGLVFIAFLVLYSGSMNT-NAQLCCNNHPELGECEAGVDDANDGKCWLHCIAG 60

Query: 61 CGNGGKCK---PNGVCHCPC 77
          C  GG CK      VCHC C
Sbjct: 61 CEKGGFCKHLSDKNVCHCYC 79

BLAST of Sed0026581 vs. ExPASy TrEMBL
Match: A0A0A0LYL5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573040 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.4e-12
Identity = 43/80 (53.75%), Postives = 48/80 (60.00%), Query Frame = 0

Query: 1  MAKVGATFTWILITFLVLYSGSLNTINGQVCCKDH-RLRSCKAGVDDILDGKCWNHCITE 60
          MAKVG     + I FL  YSGSLNT N Q+CC +H    +CK GVDD  DG+CW  CI  
Sbjct: 1  MAKVGVISWVVFIVFLAFYSGSLNT-NAQLCCINHPEWGACKPGVDDATDGRCWLKCIGG 60

Query: 61 CGNGGKCKPNG---VCHCPC 77
          C  GG CK  G   VCHC C
Sbjct: 61 CEKGGICKRVGKKHVCHCYC 79

BLAST of Sed0026581 vs. ExPASy TrEMBL
Match: A0A5D3CEJ1 (Putative defensin-like protein 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003360 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.3e-08
Identity = 32/61 (52.46%), Postives = 35/61 (57.38%), Query Frame = 0

Query: 20  SGSLNTINGQVCCKDH-RLRSCKAGVDDILDGKCWNHCITECGNGGKCKP---NGVCHCP 77
           SG     N Q+CC +H  L SC+ GVDD  DGKCW HCI  C  GG CK      VCHC 
Sbjct: 71  SGWSKNTNAQLCCNNHPELGSCEPGVDDASDGKCWLHCIAGCEKGGFCKQLSNKNVCHCY 130

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN66133.11.4e-1758.75hypothetical protein Csa_007601 [Cucumis sativus][more]
TYK10190.17.2e-1760.00putative defensin-like protein 20 [Cucumis melo var. makuwa][more]
KGN66136.11.6e-1660.00hypothetical protein Csa_007074 [Cucumis sativus][more]
TYK10191.12.7e-0852.46putative defensin-like protein 20 [Cucumis melo var. makuwa][more]
OIT08891.17.9e-0847.22putative defensin-like protein 20 [Nicotiana attenuata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LWJ97.0e-1858.75Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573030 PE=3 SV=1[more]
A0A5D3CFQ33.5e-1760.00Putative defensin-like protein 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A0A0M1N07.7e-1760.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573060 PE=3 SV=1[more]
A0A0A0LYL54.4e-1253.75Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573040 PE=3 SV=1[more]
A0A5D3CEJ11.3e-0852.46Putative defensin-like protein 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0026581.1Sed0026581.1mRNA