Sed0026538 (gene) Chayote v1

Overview


Name	Sed0026538
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Gibberellin-regulated protein 2
Location	LG11: 26467504 .. 26468286 (-)
RNA-Seq Expression	Sed0026538
Synteny	Sed0026538

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCCCCAGTTGATCCTGCCCACTCCTCTGTTCACTGAACCACAAAGCTAAAGCTTTTGCTATAAAATCCCAACCCTCTGATCTCACTCTCTCAAATTAAATTCATTTCCAATTCTCCTCAAAATACCAAAAAAAAAAAATGTCAATCTTCTTCAAAGCTTTCATTGCTTCACTCCTCCTCTCTCTTCTCTTCCTCCACTCTGTAAAATTCACAAACCCCACTTTTTTAATTTTAAATTAATTTCATTCAAACCTCATAATAATTATTACTTTTTATTTGCAGGTGGAATCCACAGAACCAGCAGGAATCAACCCCCAAAATTCTCCCAAAATGGGTAAAATATTGATCTCTTTTTTACTTCCAATGAAATTTATTTATCGTAACTTATCAACTTAAGCTTTTGAGTTTATAGACTGCGGCGGAGCGTGTATCGAAAGATGCAAGTTGTCGTCAAGGCCGCGGCTGTGCAATAGGGCATGCGGCACGTGCTGTCTGCGTTGCAACTGCGTTCCGCCGGGGACGTCCGGCAACCACCATCTGTGCCCCTGCTACGCCGCCATGACCACCCACGGCGGGCGCCTCAAGTGTCCTTGATTCTTCCAACTTTTTTACTATATGTGTAAATATATTATGTATGTTTAAATTATCCTACTCTTTTCTTTTATATATATGTCTATATGTAATATGTATATTATAAATGGTGCTTCTTTTGTAAGCTCGGTGGGTTGCTTTGCAAAGTTTAATGAACCTACACTTTTGTGTAGTTTTCTTCTTTTAAATAAA

mRNA sequence

ATCCCCAGTTGATCCTGCCCACTCCTCTGTTCACTGAACCACAAAGCTAAAGCTTTTGCTATAAAATCCCAACCCTCTGATCTCACTCTCTCAAATTAAATTCATTTCCAATTCTCCTCAAAATACCAAAAAAAAAAAATGTCAATCTTCTTCAAAGCTTTCATTGCTTCACTCCTCCTCTCTCTTCTCTTCCTCCACTCTGTGGAATCCACAGAACCAGCAGGAATCAACCCCCAAAATTCTCCCAAAATGGACTGCGGCGGAGCGTGTATCGAAAGATGCAAGTTGTCGTCAAGGCCGCGGCTGTGCAATAGGGCATGCGGCACGTGCTGTCTGCGTTGCAACTGCGTTCCGCCGGGGACGTCCGGCAACCACCATCTGTGCCCCTGCTACGCCGCCATGACCACCCACGGCGGGCGCCTCAAGTGTCCTTGATTCTTCCAACTTTTTTACTATATGTGTAAATATATTATGTATGTTTAAATTATCCTACTCTTTTCTTTTATATATATGTCTATATGTAATATGTATATTATAAATGGTGCTTCTTTTGTAAGCTCGGTGGGTTGCTTTGCAAAGTTTAATGAACCTACACTTTTGTGTAGTTTTCTTCTTTTAAATAAA

Coding sequence (CDS)

ATGTCAATCTTCTTCAAAGCTTTCATTGCTTCACTCCTCCTCTCTCTTCTCTTCCTCCACTCTGTGGAATCCACAGAACCAGCAGGAATCAACCCCCAAAATTCTCCCAAAATGGACTGCGGCGGAGCGTGTATCGAAAGATGCAAGTTGTCGTCAAGGCCGCGGCTGTGCAATAGGGCATGCGGCACGTGCTGTCTGCGTTGCAACTGCGTTCCGCCGGGGACGTCCGGCAACCACCATCTGTGCCCCTGCTACGCCGCCATGACCACCCACGGCGGGCGCCTCAAGTGTCCTTGA

Protein sequence

MSIFFKAFIASLLLSLLFLHSVESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP

Homology

[Close]

BLAST of Sed0026538 vs. NCBI nr
Match: XP_038886089.1 (snakin-2-like isoform X2 [Benincasa hispida])

HSP 1 Score: 164.1 bits (414), Expect = 6.2e-37
Identity = 79/98 (80.61%), Postives = 82/98 (83.67%), Query Frame = 0


Query: 1  MSIFFKAFIASLLLSLLFLHSVESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRA 60
          MS F KA IASL LSLLFLHSVES    G+ P +  KMDCGGAC  RC+LSSR RLCNRA
Sbjct: 1  MSFFSKALIASLFLSLLFLHSVES-NGVGLIPPSPQKMDCGGACAGRCRLSSRQRLCNRA 60

Query: 61 CGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP 99
          CGTCC RCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
Sbjct: 61 CGTCCRRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP 97

[Close]

BLAST of Sed0026538 vs. NCBI nr
Match: XP_008444802.1 (PREDICTED: snakin-2-like [Cucumis melo])

HSP 1 Score: 162.2 bits (409), Expect = 2.3e-36
Identity = 78/98 (79.59%), Postives = 82/98 (83.67%), Query Frame = 0


Query: 1  MSIFFKAFIASLLLSLLFLHSVESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRA 60
          MSI  KA  ASLLLSLLFLH VES+   G+ P++  KMDC GAC  RC LSSRPRLCNRA
Sbjct: 1  MSILTKALFASLLLSLLFLHFVESS-GVGLLPRSPQKMDCRGACTRRCSLSSRPRLCNRA 60

Query: 61 CGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP 99
          CGTCC RCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
Sbjct: 61 CGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP 97

[Close]

BLAST of Sed0026538 vs. NCBI nr
Match: XP_023002563.1 (snakin-2-like [Cucurbita maxima])

HSP 1 Score: 161.8 bits (408), Expect = 3.1e-36
Identity = 77/98 (78.57%), Postives = 85/98 (86.73%), Query Frame = 0


Query: 1  MSIFFKAFIASLLLSLLFLHSVESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRA 60
          M+I  KA IASLLLSLLFLHSVES   A ++P +  KMDCGGAC  RC+LSSRPRLC+RA
Sbjct: 1  MAISSKALIASLLLSLLFLHSVESIGAAMVSP-SPQKMDCGGACAARCRLSSRPRLCHRA 60

Query: 61 CGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP 99
          CGTCC RCNCVPPGTSGNHHLCPCYA++TTHGGRLKCP
Sbjct: 61 CGTCCQRCNCVPPGTSGNHHLCPCYASLTTHGGRLKCP 97

[Close]

BLAST of Sed0026538 vs. NCBI nr
Match: XP_038886088.1 (snakin-2-like isoform X1 [Benincasa hispida])

HSP 1 Score: 161.4 bits (407), Expect = 4.0e-36
Identity = 77/99 (77.78%), Postives = 82/99 (82.83%), Query Frame = 0


Query: 1  MSIFFKAFIASLLLSLLFLHSVE-STEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNR 60
          MS F KA IASL LSLLFLHSV+  +   G+ P +  KMDCGGAC  RC+LSSR RLCNR
Sbjct: 1  MSFFSKALIASLFLSLLFLHSVKVESNGVGLIPPSPQKMDCGGACAGRCRLSSRQRLCNR 60

Query: 61 ACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP 99
          ACGTCC RCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
Sbjct: 61 ACGTCCRRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP 99

[Close]

BLAST of Sed0026538 vs. NCBI nr
Match: XP_022951559.1 (snakin-2-like [Cucurbita moschata] >KAG6585544.1 Snakin-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020456.1 Snakin-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 161.0 bits (406), Expect = 5.2e-36
Identity = 76/98 (77.55%), Postives = 85/98 (86.73%), Query Frame = 0


Query: 1  MSIFFKAFIASLLLSLLFLHSVESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRA 60
          M+I  KA IASLLLSLLFLHSVES   A ++P +  KMDCGGAC  RC+LSSRPRLC+RA
Sbjct: 1  MAISSKALIASLLLSLLFLHSVESIGAAMVSP-SPQKMDCGGACAARCRLSSRPRLCHRA 60

Query: 61 CGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP 99
          CGTCC RCNCVPPGTSGNHH+CPCYA++TTHGGRLKCP
Sbjct: 61 CGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP 97

[Close]

BLAST of Sed0026538 vs. ExPASy Swiss-Prot
Match: Q93X17 (Snakin-2 OS=Solanum tuberosum OX=4113 GN=SN2 PE=1 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 5.8e-30
Identity = 62/100 (62.00%), Postives = 71/100 (71.00%), Query Frame = 0


Query: 6   KAFIASLLLSLLFLHSVESTEPAGINPQ-------NSPKMDCGGACIERCKLSSRPRLCN 65
           KA  ASLLLSLL L  V+S +   +          +  K+DCGGAC  RC+LSSRPRLCN
Sbjct: 5   KALFASLLLSLLLLEQVQSIQTDQVTSNAISEAAYSYKKIDCGGACAARCRLSSRPRLCN 64

Query: 66  RACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP 99
           RACGTCC RCNCVPPGTSGN   CPCYA++TTHG + KCP
Sbjct: 65  RACGTCCARCNCVPPGTSGNTETCPCYASLTTHGNKRKCP 104

[Close]

BLAST of Sed0026538 vs. ExPASy Swiss-Prot
Match: P46689 (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana OX=3702 GN=GASA1 PE=2 SV=2)

HSP 1 Score: 125.2 bits (313), Expect = 4.2e-28
Identity = 59/94 (62.77%), Postives = 71/94 (75.53%), Query Frame = 0


Query: 6  KAFIASLLLSLLFLHSVES-TEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTC 65
          KA IASLL+SLL L  V++  E +      + K+DCG AC+ RC+LS RPRLC+RACGTC
Sbjct: 5  KALIASLLISLLVLQLVQADVENSQKKNGYAKKIDCGSACVARCRLSRRPRLCHRACGTC 64

Query: 66 CLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP 99
          C RCNCVPPGT GN+  C CYA++TTHGGR KCP
Sbjct: 65 CYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98

[Close]

BLAST of Sed0026538 vs. ExPASy Swiss-Prot
Match: F4IQJ4 (Gibberellin-regulated protein 11 OS=Arabidopsis thaliana OX=3702 GN=GASA11 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.1e-27
Identity = 56/94 (59.57%), Postives = 68/94 (72.34%), Query Frame = 0


Query: 5  FKAFIASLLLSLLFLHSVESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTC 64
          F+  +ASLL+SLL L  V +     +   ++PK+DC   C ERC LSSRP LC+RACGTC
Sbjct: 4  FRVLLASLLISLLVLDFVHADM---VTSNDAPKIDCNSRCQERCSLSSRPNLCHRACGTC 63

Query: 65 CLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP 99
          C RCNCV PGTSGN+  CPCY ++TTHGGR KCP
Sbjct: 64 CARCNCVAPGTSGNYDKCPCYGSLTTHGGRRKCP 94

[Close]

BLAST of Sed0026538 vs. ExPASy Swiss-Prot
Match: P46687 (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana OX=3702 GN=GASA3 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 9.6e-25
Identity = 56/100 (56.00%), Postives = 68/100 (68.00%), Query Frame = 0


Query: 1  MSIFFKAFIASLLLSLL--FLHSVESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCN 60
          M+IF    +  L+L  L  F   V + E + +  +   K+DCGG C  RC  SSRP LC 
Sbjct: 1  MAIFRSTLVLLLILFCLTTFELHVHAAEDSQVG-EGVVKIDCGGRCKGRCSKSSRPNLCL 60

Query: 61 RACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP 99
          RAC +CC RCNCVPPGT+GNHHLCPCYA++TT GGRLKCP
Sbjct: 61 RACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99

[Close]

BLAST of Sed0026538 vs. ExPASy Swiss-Prot
Match: P46688 (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana OX=3702 GN=GASA2 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.8e-24
Identity = 53/100 (53.00%), Postives = 69/100 (69.00%), Query Frame = 0


Query: 1  MSIFFKAFIASLLLSLLFLHS--VESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCN 60
          M++F    +  L++  L  +   V + + A +  +   K+DCGG C +RC  SSR +LC 
Sbjct: 1  MAVFRSTLVLLLIIVCLTTYELHVHAADGAKVG-EGVVKIDCGGRCKDRCSKSSRTKLCL 60

Query: 61 RACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP 99
          RAC +CC RCNCVPPGTSGN HLCPCYA++TTHGGRLKCP
Sbjct: 61 RACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99

[Close]

BLAST of Sed0026538 vs. ExPASy TrEMBL
Match: A0A1S3BBY7 (snakin-2-like OS=Cucumis melo OX=3656 GN=LOC103488041 PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.1e-36
Identity = 78/98 (79.59%), Postives = 82/98 (83.67%), Query Frame = 0


Query: 1  MSIFFKAFIASLLLSLLFLHSVESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRA 60
          MSI  KA  ASLLLSLLFLH VES+   G+ P++  KMDC GAC  RC LSSRPRLCNRA
Sbjct: 1  MSILTKALFASLLLSLLFLHFVESS-GVGLLPRSPQKMDCRGACTRRCSLSSRPRLCNRA 60

Query: 61 CGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP 99
          CGTCC RCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
Sbjct: 61 CGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP 97

[Close]

BLAST of Sed0026538 vs. ExPASy TrEMBL
Match: A0A6J1KTY1 (snakin-2-like OS=Cucurbita maxima OX=3661 GN=LOC111496372 PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.5e-36
Identity = 77/98 (78.57%), Postives = 85/98 (86.73%), Query Frame = 0


Query: 1  MSIFFKAFIASLLLSLLFLHSVESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRA 60
          M+I  KA IASLLLSLLFLHSVES   A ++P +  KMDCGGAC  RC+LSSRPRLC+RA
Sbjct: 1  MAISSKALIASLLLSLLFLHSVESIGAAMVSP-SPQKMDCGGACAARCRLSSRPRLCHRA 60

Query: 61 CGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP 99
          CGTCC RCNCVPPGTSGNHHLCPCYA++TTHGGRLKCP
Sbjct: 61 CGTCCQRCNCVPPGTSGNHHLCPCYASLTTHGGRLKCP 97

[Close]

BLAST of Sed0026538 vs. ExPASy TrEMBL
Match: A0A6J1GJ50 (snakin-2-like OS=Cucurbita moschata OX=3662 GN=LOC111454338 PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.5e-36
Identity = 76/98 (77.55%), Postives = 85/98 (86.73%), Query Frame = 0


Query: 1  MSIFFKAFIASLLLSLLFLHSVESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRA 60
          M+I  KA IASLLLSLLFLHSVES   A ++P +  KMDCGGAC  RC+LSSRPRLC+RA
Sbjct: 1  MAISSKALIASLLLSLLFLHSVESIGAAMVSP-SPQKMDCGGACAARCRLSSRPRLCHRA 60

Query: 61 CGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP 99
          CGTCC RCNCVPPGTSGNHH+CPCYA++TTHGGRLKCP
Sbjct: 61 CGTCCQRCNCVPPGTSGNHHMCPCYASLTTHGGRLKCP 97

[Close]

BLAST of Sed0026538 vs. ExPASy TrEMBL
Match: A0A0A0LNS5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G368260 PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 4.8e-35
Identity = 76/98 (77.55%), Postives = 78/98 (79.59%), Query Frame = 0


Query: 1  MSIFFKAFIASLLLSLLFLHSVESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRA 60
          M I  K   ASLLLSLLFLH VES    G+ P N  +MDC GAC  RC LSSRPRLCNRA
Sbjct: 1  MFILTKPLFASLLLSLLFLHFVES-NGVGLLPPNPRRMDCRGACTRRCTLSSRPRLCNRA 60

Query: 61 CGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP 99
          CGTCC RCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP
Sbjct: 61 CGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP 97

[Close]

BLAST of Sed0026538 vs. ExPASy TrEMBL
Match: A0A6J1CRW3 (snakin-2-like OS=Momordica charantia OX=3673 GN=LOC111014004 PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.1e-34
Identity = 77/109 (70.64%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 1   MSIFFKAFIAS--LLLSLLFLHS---------VESTEPAGINPQNSPKMDCGGACIERCK 60
           MS+F K  I +  LL SLLFLH+         VES + AGI+P    KMDCGGAC  RC+
Sbjct: 1   MSMFSKVLIVASLLLFSLLFLHAAADDHPALQVESVDQAGISPSTPYKMDCGGACAGRCR 60

Query: 61  LSSRPRLCNRACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP 99
           LSSRPRLCNRACGTCC RCNCVPPGTSGNHHLCPCYAAMTTHGGR KCP
Sbjct: 61  LSSRPRLCNRACGTCCQRCNCVPPGTSGNHHLCPCYAAMTTHGGRPKCP 109

[Close]

BLAST of Sed0026538 vs. TAIR 10
Match: AT1G75750.2 (GAST1 protein homolog 1 )

HSP 1 Score: 129.4 bits (324), Expect = 1.6e-30
Identity = 59/93 (63.44%), Postives = 71/93 (76.34%), Query Frame = 0


Query: 6  KAFIASLLLSLLFLHSVESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTCC 65
          KA IASLL+SLL L  V++ E +      + K+DCG AC+ RC+LS RPRLC+RACGTCC
Sbjct: 5  KALIASLLISLLVLQLVQADENSQKKNGYAKKIDCGSACVARCRLSRRPRLCHRACGTCC 64

Query: 66 LRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP 99
           RCNCVPPGT GN+  C CYA++TTHGGR KCP
Sbjct: 65 YRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 97

[Close]

BLAST of Sed0026538 vs. TAIR 10
Match: AT1G75750.1 (GAST1 protein homolog 1 )

HSP 1 Score: 125.2 bits (313), Expect = 3.0e-29
Identity = 59/94 (62.77%), Postives = 71/94 (75.53%), Query Frame = 0


Query: 6  KAFIASLLLSLLFLHSVES-TEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTC 65
          KA IASLL+SLL L  V++  E +      + K+DCG AC+ RC+LS RPRLC+RACGTC
Sbjct: 5  KALIASLLISLLVLQLVQADVENSQKKNGYAKKIDCGSACVARCRLSRRPRLCHRACGTC 64

Query: 66 CLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP 99
          C RCNCVPPGT GN+  C CYA++TTHGGR KCP
Sbjct: 65 CYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98

[Close]

BLAST of Sed0026538 vs. TAIR 10
Match: AT2G18420.1 (Gibberellin-regulated family protein )

HSP 1 Score: 122.9 bits (307), Expect = 1.5e-28
Identity = 56/94 (59.57%), Postives = 68/94 (72.34%), Query Frame = 0


Query: 5  FKAFIASLLLSLLFLHSVESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCNRACGTC 64
          F+  +ASLL+SLL L  V +     +   ++PK+DC   C ERC LSSRP LC+RACGTC
Sbjct: 4  FRVLLASLLISLLVLDFVHADM---VTSNDAPKIDCNSRCQERCSLSSRPNLCHRACGTC 63

Query: 65 CLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP 99
          C RCNCV PGTSGN+  CPCY ++TTHGGR KCP
Sbjct: 64 CARCNCVAPGTSGNYDKCPCYGSLTTHGGRRKCP 94

[Close]

BLAST of Sed0026538 vs. TAIR 10
Match: AT4G09600.1 (GAST1 protein homolog 3 )

HSP 1 Score: 114.0 bits (284), Expect = 6.8e-26
Identity = 56/100 (56.00%), Postives = 68/100 (68.00%), Query Frame = 0


Query: 1  MSIFFKAFIASLLLSLL--FLHSVESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCN 60
          M+IF    +  L+L  L  F   V + E + +  +   K+DCGG C  RC  SSRP LC 
Sbjct: 1  MAIFRSTLVLLLILFCLTTFELHVHAAEDSQVG-EGVVKIDCGGRCKGRCSKSSRPNLCL 60

Query: 61 RACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP 99
          RAC +CC RCNCVPPGT+GNHHLCPCYA++TT GGRLKCP
Sbjct: 61 RACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99

[Close]

BLAST of Sed0026538 vs. TAIR 10
Match: AT4G09610.1 (GAST1 protein homolog 2 )

HSP 1 Score: 111.7 bits (278), Expect = 3.4e-25
Identity = 53/100 (53.00%), Postives = 69/100 (69.00%), Query Frame = 0


Query: 1  MSIFFKAFIASLLLSLLFLHS--VESTEPAGINPQNSPKMDCGGACIERCKLSSRPRLCN 60
          M++F    +  L++  L  +   V + + A +  +   K+DCGG C +RC  SSR +LC 
Sbjct: 1  MAVFRSTLVLLLIIVCLTTYELHVHAADGAKVG-EGVVKIDCGGRCKDRCSKSSRTKLCL 60

Query: 61 RACGTCCLRCNCVPPGTSGNHHLCPCYAAMTTHGGRLKCP 99
          RAC +CC RCNCVPPGTSGN HLCPCYA++TTHGGRLKCP
Sbjct: 61 RACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99

The following BLAST results are available for this feature:

BLAST of Sed0026538 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886089.1	6.2e-37	80.61	snakin-2-like isoform X2 [Benincasa hispida]	[more]
XP_008444802.1	2.3e-36	79.59	PREDICTED: snakin-2-like [Cucumis melo]	[more]
XP_023002563.1	3.1e-36	78.57	snakin-2-like [Cucurbita maxima]	[more]
XP_038886088.1	4.0e-36	77.78	snakin-2-like isoform X1 [Benincasa hispida]	[more]
XP_022951559.1	5.2e-36	77.55	snakin-2-like [Cucurbita moschata] >KAG6585544.1 Snakin-2, partial [Cucurbita ar...	[more]

BLAST of Sed0026538 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93X17	5.8e-30	62.00	Snakin-2 OS=Solanum tuberosum OX=4113 GN=SN2 PE=1 SV=1	[more]
P46689	4.2e-28	62.77	Gibberellin-regulated protein 1 OS=Arabidopsis thaliana OX=3702 GN=GASA1 PE=2 SV...	[more]
F4IQJ4	2.1e-27	59.57	Gibberellin-regulated protein 11 OS=Arabidopsis thaliana OX=3702 GN=GASA11 PE=3 ...	[more]
P46687	9.6e-25	56.00	Gibberellin-regulated protein 3 OS=Arabidopsis thaliana OX=3702 GN=GASA3 PE=2 SV...	[more]
P46688	4.8e-24	53.00	Gibberellin-regulated protein 2 OS=Arabidopsis thaliana OX=3702 GN=GASA2 PE=2 SV...	[more]

BLAST of Sed0026538 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BBY7	1.1e-36	79.59	snakin-2-like OS=Cucumis melo OX=3656 GN=LOC103488041 PE=3 SV=1	[more]
A0A6J1KTY1	1.5e-36	78.57	snakin-2-like OS=Cucurbita maxima OX=3661 GN=LOC111496372 PE=3 SV=1	[more]
A0A6J1GJ50	2.5e-36	77.55	snakin-2-like OS=Cucurbita moschata OX=3662 GN=LOC111454338 PE=3 SV=1	[more]
A0A0A0LNS5	4.8e-35	77.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G368260 PE=3 SV=1	[more]
A0A6J1CRW3	1.1e-34	70.64	snakin-2-like OS=Momordica charantia OX=3673 GN=LOC111014004 PE=3 SV=1	[more]

BLAST of Sed0026538 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75750.2	1.6e-30	63.44	GAST1 protein homolog 1	[more]
AT1G75750.1	3.0e-29	62.77	GAST1 protein homolog 1	[more]
AT2G18420.1	1.5e-28	59.57	Gibberellin-regulated family protein	[more]
AT4G09600.1	6.8e-26	56.00	GAST1 protein homolog 3	[more]
AT4G09610.1	3.4e-25	53.00	GAST1 protein homolog 2	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003854	Gibberellin regulated protein	PFAM	PF02704	GASA	coord: 39..98 e-value: 8.0E-22 score: 77.1
None	No IPR available	PANTHER	PTHR23201:SF86	SNAKIN-2-LIKE ISOFORM X1	coord: 5..98
None	No IPR available	PANTHER	PTHR23201	EXTENSIN, PROLINE-RICH PROTEIN	coord: 5..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0026538.1	Sed0026538.1	mRNA