Sed0026534 (gene) Chayote v1

Overview


Name	Sed0026534
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Poly(A)-specific ribonuclease
Location	LG06: 39750367 .. 39751206 (-)
RNA-Seq Expression	Sed0026534
Synteny	Sed0026534

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGAAGAAATCGAAACCCGAGTGGCGAAAACGATAAAATTCGACAAGTTTGGGCATACAATTTCGAGTCGGAAATGTCACATCTCGATAACTGCCTTCGATCTCACACTATCCTTTCCATTGACACTGAATTTCCAGGATTGATTATGACCACCCCTTGGATCTCCATCGATGAACAACTCTATGAAGACTTTCAATTCAATGTTAACCACACCAAAATGATTCAACTAGGGTTGACAGCTGTGGATGAATGGGGAAGCGTCGGCGGTTCATGGGAGTTCAACTTCTCCGACTTCGATCTAACGACCGACTACTACAACCCCGCCTCGATTTCATTCTTGATAGAGAACGGGATAGATTTCGAGAGGCTGAAAAGAGAAGGAATTTGGATGAGAGTATTTGCAGGAAACTTCTTACACATTGTCCGAAGGAATAAAATTTCCAGATGGATCACATTCCATGGACTATACGATATCGGGTATCTTATACAAGCGATGGGCATAGTGGAGAGATTGCCGAGGTCAATGTACGAATTCGCTACGATAATTGTAAACGAAGTGGGGATCGTGAGAGACTTGAAGTGTATGGCGAGATTCTGCCAAGGGAAGTTAGGACTCCGAAAACTGGGCAAACTGCTCGGCCAAAATCGGTTCGAATTAAAGCACCATGCGGGTTCGAACAGTTTGTTGACGGCATTAATTCACCTAAAGATGGAGCAATGCTATGATCTTGGTCCACAAATTTGTGATGGGTTTTTGTATGGATTTTCCAATAAACTGAAGTACATGGACATGCAAACTCCTGCTGTTACGCCCCTTTATTTATGCTCCTTATAG

mRNA sequence

ATGGATGGAAGAAATCGAAACCCGAGTGGCGAAAACGATAAAATTCGACAAGTTTGGGCATACAATTTCGAGTCGGAAATGTCACATCTCGATAACTGCCTTCGATCTCACACTATCCTTTCCATTGACACTGAATTTCCAGGATTGATTATGACCACCCCTTGGATCTCCATCGATGAACAACTCTATGAAGACTTTCAATTCAATGTTAACCACACCAAAATGATTCAACTAGGGTTGACAGCTGTGGATGAATGGGGAAGCGTCGGCGGTTCATGGGAGTTCAACTTCTCCGACTTCGATCTAACGACCGACTACTACAACCCCGCCTCGATTTCATTCTTGATAGAGAACGGGATAGATTTCGAGAGGCTGAAAAGAGAAGGAATTTGGATGAGAGTATTTGCAGGAAACTTCTTACACATTGTCCGAAGGAATAAAATTTCCAGATGGATCACATTCCATGGACTATACGATATCGGGTATCTTATACAAGCGATGGGCATAGTGGAGAGATTGCCGAGGTCAATGTACGAATTCGCTACGATAATTGTAAACGAAGTGGGGATCGTGAGAGACTTGAAGTGTATGGCGAGATTCTGCCAAGGGAAGTTAGGACTCCGAAAACTGGGCAAACTGCTCGGCCAAAATCGGTTCGAATTAAAGCACCATGCGGGTTCGAACAGTTTGTTGACGGCATTAATTCACCTAAAGATGGAGCAATGCTATGATCTTGGTCCACAAATTTGTGATGGGTTTTTGTATGGATTTTCCAATAAACTGAAGTACATGGACATGCAAACTCCTGCTGTTACGCCCCTTTATTTATGCTCCTTATAG

Coding sequence (CDS)

ATGGATGGAAGAAATCGAAACCCGAGTGGCGAAAACGATAAAATTCGACAAGTTTGGGCATACAATTTCGAGTCGGAAATGTCACATCTCGATAACTGCCTTCGATCTCACACTATCCTTTCCATTGACACTGAATTTCCAGGATTGATTATGACCACCCCTTGGATCTCCATCGATGAACAACTCTATGAAGACTTTCAATTCAATGTTAACCACACCAAAATGATTCAACTAGGGTTGACAGCTGTGGATGAATGGGGAAGCGTCGGCGGTTCATGGGAGTTCAACTTCTCCGACTTCGATCTAACGACCGACTACTACAACCCCGCCTCGATTTCATTCTTGATAGAGAACGGGATAGATTTCGAGAGGCTGAAAAGAGAAGGAATTTGGATGAGAGTATTTGCAGGAAACTTCTTACACATTGTCCGAAGGAATAAAATTTCCAGATGGATCACATTCCATGGACTATACGATATCGGGTATCTTATACAAGCGATGGGCATAGTGGAGAGATTGCCGAGGTCAATGTACGAATTCGCTACGATAATTGTAAACGAAGTGGGGATCGTGAGAGACTTGAAGTGTATGGCGAGATTCTGCCAAGGGAAGTTAGGACTCCGAAAACTGGGCAAACTGCTCGGCCAAAATCGGTTCGAATTAAAGCACCATGCGGGTTCGAACAGTTTGTTGACGGCATTAATTCACCTAAAGATGGAGCAATGCTATGATCTTGGTCCACAAATTTGTGATGGGTTTTTGTATGGATTTTCCAATAAACTGAAGTACATGGACATGCAAACTCCTGCTGTTACGCCCCTTTATTTATGCTCCTTATAG

Protein sequence

MDGRNRNPSGENDKIRQVWAYNFESEMSHLDNCLRSHTILSIDTEFPGLIMTTPWISIDEQLYEDFQFNVNHTKMIQLGLTAVDEWGSVGGSWEFNFSDFDLTTDYYNPASISFLIENGIDFERLKREGIWMRVFAGNFLHIVRRNKISRWITFHGLYDIGYLIQAMGIVERLPRSMYEFATIIVNEVGIVRDLKCMARFCQGKLGLRKLGKLLGQNRFELKHHAGSNSLLTALIHLKMEQCYDLGPQICDGFLYGFSNKLKYMDMQTPAVTPLYLCSL

Homology

[Close]

BLAST of Sed0026534 vs. NCBI nr
Match: XP_038895744.1 (putative CCR4-associated factor 1 homolog 8 [Benincasa hispida])

HSP 1 Score: 342.8 bits (878), Expect = 2.8e-90
Identity = 165/278 (59.35%), Postives = 207/278 (74.46%), Query Frame = 0


Query: 15  IRQVWAYNFESEMSHLDNCLRSHTILSIDTEFPGLIMTTPWISIDEQLYEDFQFNVNHTK 74
           I +VWA NF++E+S L+ CL  HTI+SIDTEFPG I  +PW SIDE LYEDF+FNVN TK
Sbjct: 11  IHKVWASNFDAEISKLEECLEFHTIVSIDTEFPGFIRNSPWGSIDETLYEDFRFNVNQTK 70

Query: 75  MIQLGLTAVDEWGSVGGSWEFNFSDFDLTTDYYNPASISFLIENGIDFERLKREGIWMRV 134
           +IQLGLTA D+ G +GGSWEFNFSDFD   D  +P+S SFL +NG+DF +LK+ GI + +
Sbjct: 71  LIQLGLTACDDSGKIGGSWEFNFSDFDPEIDAQSPSSASFLEQNGLDFNKLKKYGIPINL 130

Query: 135 FAGNFLHIVRRNKISRWITFHGLYDIGYLIQAMGIVERLPRSMYEFATIIVNEVGIVRDL 194
           F   F+HI+R++ + RW+TFHGLYDIGYLI+AMGI E LP +M EFAT++V  +GIVRDL
Sbjct: 131 FTAKFVHIIRKHNVFRWVTFHGLYDIGYLIKAMGITEVLPETMEEFATVVVRRLGIVRDL 190

Query: 195 KCMARFCQ----GKLGLRKLGKLLGQNRFELKHHAGSNSLLTALIHLKMEQCYDLGPQIC 254
           K MARFC+    GKLGL +LGKLL Q R+ LKH+AGS+SLLTA  H +M Q +D+  +IC
Sbjct: 191 KHMARFCEGLEDGKLGLERLGKLLDQKRYGLKHNAGSDSLLTASAHFEMIQRFDMDAEIC 250

Query: 255 DGFLYGFSNKLKYMDM-------------QTPAVTPLY 276
           DG+LYGFSNKL+ MD+             Q P   PLY
Sbjct: 251 DGYLYGFSNKLQSMDINMNMFHRKIITFGQIPYAIPLY 288

[Close]

BLAST of Sed0026534 vs. NCBI nr
Match: XP_023533172.1 (putative CCR4-associated factor 1 homolog 8 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 337.4 bits (864), Expect = 1.2e-88
Identity = 163/283 (57.60%), Postives = 209/283 (73.85%), Query Frame = 0


Query: 1   MDGRNRNPSGENDKIRQVWAYNFESEMSHLDNCLRSHTILSIDTEFPGLIMTTPWISIDE 60
           MD   R P G+N  IR+VWAYN + E+  LD CL S++++SIDTEFPG I  TPW +IDE
Sbjct: 1   MDRIVRGPRGDNPLIREVWAYNLDHEIIRLDRCLLSYSVMSIDTEFPGCIKRTPWGTIDE 60

Query: 61  QLYEDFQFNVNHTKMIQLGLTAVDEWGSVGGSWEFNFSDFDLTTDYYNPASISFLIENGI 120
           +LY DF+FNVN TK+IQLG+T  DE G++GG+WEFNFSDFD   D +NPASI FL +NG+
Sbjct: 61  ELYADFRFNVNQTKVIQLGVTVSDEVGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL 120

Query: 121 DFERLKREGIWMRVFAGNFLHIVRRNKISRWITFHGLYDIGYLIQAMGIVERLPRSMYEF 180
           DF +LK++GI +R FA  FL+ +R++ I RW+TFHGLYDIGYL+ AMG+V+ LP ++ EF
Sbjct: 121 DFGKLKKDGIQVRKFAIRFLYTIRKHAIYRWVTFHGLYDIGYLMLAMGVVKSLPETLGEF 180

Query: 181 ATIIVNEVGIVRDLKCMARFCQ----GKLGLRKLGKLLGQNRFELKHHAGSNSLLTALIH 240
             I+   VG VRDLK MARFC+    G LGL KLG+LL Q RF LKHHAGS+SL+TAL+H
Sbjct: 181 EWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLH 240

Query: 241 LKMEQCYDLGPQICDGFLYGFSNKL-KYMDMQTPAVTPLYLCS 279
            KM Q YD   +ICDGFLYG S K  +++ +QT  +     C+
Sbjct: 241 EKMLQRYDFNAEICDGFLYGLSKKFEEFVGLQTHRIYVQIQCA 283

[Close]

BLAST of Sed0026534 vs. NCBI nr
Match: KAG7027009.1 (putative CCR4-associated factor 1-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 334.0 bits (855), Expect = 1.3e-87
Identity = 161/266 (60.53%), Postives = 201/266 (75.56%), Query Frame = 0


Query: 1   MDGRNRNPSGENDKIRQVWAYNFESEMSHLDNCLRSHTILSIDTEFPGLIMTTPWISIDE 60
           MD   R P G+N  IR+VWAYN + E+  LD CL S++++SIDTEFPG I  TPW +IDE
Sbjct: 1   MDRIVRGPRGDNPLIREVWAYNLDHEIIRLDRCLVSYSVMSIDTEFPGCIKRTPWGTIDE 60

Query: 61  QLYEDFQFNVNHTKMIQLGLTAVDEWGSVGGSWEFNFSDFDLTTDYYNPASISFLIENGI 120
           +LY DF+FNVN TK+IQLG+T  DE G++GG+WEFNFSDFD   D +NPASI FL +NG+
Sbjct: 61  ELYADFRFNVNQTKVIQLGVTVSDELGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL 120

Query: 121 DFERLKREGIWMRVFAGNFLHIVRRNKISRWITFHGLYDIGYLIQAMGIVERLPRSMYEF 180
           DF +LK++GI +R FA  FL+ +R++ I RWITFHGLYDIGYL+ AMG+V+ LP ++ EF
Sbjct: 121 DFGKLKKDGIKVRKFAIRFLYTLRKHAIYRWITFHGLYDIGYLMLAMGVVKSLPETLGEF 180

Query: 181 ATIIVNEVGIVRDLKCMARFCQ----GKLGLRKLGKLLGQNRFELKHHAGSNSLLTALIH 240
             I+   VG VRDLK MARFC+    G LGL KLG+LL Q RF LKHHAGS+SL+TAL+H
Sbjct: 181 EWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLH 240

Query: 241 LKMEQCYDLGPQICDGFLYGFSNKLK 263
            KM Q YD   +ICDGFLYG S K +
Sbjct: 241 EKMLQRYDFHAEICDGFLYGLSKKFE 266

[Close]

BLAST of Sed0026534 vs. NCBI nr
Match: KAG6604930.1 (putative CCR4-associated factor 1-like 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 333.2 bits (853), Expect = 2.2e-87
Identity = 160/266 (60.15%), Postives = 201/266 (75.56%), Query Frame = 0


Query: 1   MDGRNRNPSGENDKIRQVWAYNFESEMSHLDNCLRSHTILSIDTEFPGLIMTTPWISIDE 60
           MD   R P G+N  IR+VWAYN + E+  LD CL S++++SIDTEFPG I  TPW +IDE
Sbjct: 1   MDRIVRGPRGDNPLIREVWAYNLDHEIIRLDRCLVSYSVMSIDTEFPGCIKRTPWGTIDE 60

Query: 61  QLYEDFQFNVNHTKMIQLGLTAVDEWGSVGGSWEFNFSDFDLTTDYYNPASISFLIENGI 120
           +LY DF+FNVN TK+IQLG+T  DE G++GG+WEFNFSDFD   D +NPASI FL +NG+
Sbjct: 61  ELYADFRFNVNQTKVIQLGVTVSDELGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL 120

Query: 121 DFERLKREGIWMRVFAGNFLHIVRRNKISRWITFHGLYDIGYLIQAMGIVERLPRSMYEF 180
           DF +LK++GI +R FA  F++ +R++ I RWITFHGLYDIGYL+ AMG+V+ LP ++ EF
Sbjct: 121 DFGKLKKDGIKVRKFAIRFIYTLRKHAIYRWITFHGLYDIGYLMLAMGVVKSLPETLGEF 180

Query: 181 ATIIVNEVGIVRDLKCMARFCQ----GKLGLRKLGKLLGQNRFELKHHAGSNSLLTALIH 240
             I+   VG VRDLK MARFC+    G LGL KLG+LL Q RF LKHHAGS+SL+TAL+H
Sbjct: 181 EWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLH 240

Query: 241 LKMEQCYDLGPQICDGFLYGFSNKLK 263
            KM Q YD   +ICDGFLYG S K +
Sbjct: 241 EKMLQRYDFHAEICDGFLYGLSKKFE 266

[Close]

BLAST of Sed0026534 vs. NCBI nr
Match: XP_022947868.1 (putative CCR4-associated factor 1 homolog 8 [Cucurbita moschata])

HSP 1 Score: 329.7 bits (844), Expect = 2.4e-86
Identity = 159/266 (59.77%), Postives = 199/266 (74.81%), Query Frame = 0


Query: 1   MDGRNRNPSGENDKIRQVWAYNFESEMSHLDNCLRSHTILSIDTEFPGLIMTTPWISIDE 60
           MD   R P G+N  IR+VWAYN + E+  LD CL S++I+SIDTEFPG I  TPW + DE
Sbjct: 1   MDRIVRGPRGDNPLIREVWAYNLDHEIIRLDRCLLSYSIMSIDTEFPGCIKRTPWGTFDE 60

Query: 61  QLYEDFQFNVNHTKMIQLGLTAVDEWGSVGGSWEFNFSDFDLTTDYYNPASISFLIENGI 120
           +LY DF+FNVN TK+IQLG+T  DE G++GG+WEFNFSDFD   D +NPASI FL +NG+
Sbjct: 61  ELYADFRFNVNQTKVIQLGVTVSDESGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL 120

Query: 121 DFERLKREGIWMRVFAGNFLHIVRRNKISRWITFHGLYDIGYLIQAMGIVERLPRSMYEF 180
           DF +LK++GI +R FA  FL+ + ++ I RW+TFHGLYDIGYL+ AMG+V+ LP ++ EF
Sbjct: 121 DFGKLKKDGIKVRKFAIRFLYTLGKHAIYRWVTFHGLYDIGYLMLAMGVVKSLPETLGEF 180

Query: 181 ATIIVNEVGIVRDLKCMARFCQ----GKLGLRKLGKLLGQNRFELKHHAGSNSLLTALIH 240
             I+   VG VRDLK MARFC+    G LGL KLG+LL Q RF LKHHAGS+SL+TAL+H
Sbjct: 181 KWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLH 240

Query: 241 LKMEQCYDLGPQICDGFLYGFSNKLK 263
            KM Q YD   +ICDGFLYG S K +
Sbjct: 241 EKMLQRYDFHAEICDGFLYGLSKKFE 266

[Close]

BLAST of Sed0026534 vs. ExPASy Swiss-Prot
Match: Q9SHJ0 (Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=CAF1-1 PE=2 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.0e-42
Identity = 97/263 (36.88%), Postives = 145/263 (55.13%), Query Frame = 0


Query: 16  RQVWAYNFESEMSHLDNCLRSHTILSIDTEFPGLIMTTPWISIDEQLYEDFQFNVNHTKM 75
           R+VW  N + EM+ +  CL+   +++ DTE+PG+I  T + S  ++ Y   + NV +TK+
Sbjct: 10  RRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTYFDSSSDECYRAMKGNVENTKL 69

Query: 76  IQLGLTAVDEWGSVGGSWEFNFSDFDLTTDYYNPASISFLIENGIDFERLKREGIWM--R 135
           IQ G T  +  G +GG WE NFS+F   +D  N  SI FL  +G+D ++++ EG+ M   
Sbjct: 70  IQCGFTLFNAKGEIGGVWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIRDEGVDMFGY 129

Query: 136 VFAGNFLHIVRRNKISRWITFHGLYDIGYLIQAMGIVERLPRSMYEFATIIVNEVGIVRD 195
            F    + + R  K   ++TF G YD  Y +  +    +LP +  EFAT +V   G V D
Sbjct: 130 GFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILN-HGKLPETHGEFATEVVKVFGQVYD 189

Query: 196 LKCMARFCQG---KLGLRKLGKLLGQNRFELKHHAGSNSLLTALIHLKMEQCYDLGPQIC 255
            K MA FC+G    LGL KL +LL   R    HHAGS+SL+TAL+ +K++  Y+   +  
Sbjct: 190 TKVMAGFCEGLGEHLGLSKLAQLLQITRVGRAHHAGSDSLMTALVFIKLKHVYE-DSRFA 249

Query: 256 DGFLYGFSNKLKYMDMQTPAVTP 274
            G +YG   K   +    PA  P
Sbjct: 250 RGLIYGI-GKSNLVAAPAPAPVP 269

[Close]

BLAST of Sed0026534 vs. ExPASy Swiss-Prot
Match: Q9LXM4 (Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana OX=3702 GN=CAF1-8 PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.7e-40
Identity = 90/217 (41.47%), Postives = 129/217 (59.45%), Query Frame = 0


Query: 27  MSHLDNCLRSHTILSIDTEFPGLIMTTPWISIDEQLYEDFQFNVNHTKMIQLGLTAVDEW 86
           MS +++CLRS+  ++IDTEFP  +  T   + DE+ Y D  F+V+  K+IQLGLT  D  
Sbjct: 1   MSLIEDCLRSYRFIAIDTEFPSTLRETTQHATDEERYMDMSFSVDRAKLIQLGLTLFDIN 60

Query: 87  GSVGGSWEFNFSDFDLTTDYYNPASISFLIENGIDFERLKREGIWMRVFAGNFLHIVRRN 146
           G +GG+WE NFSDF +  D  N  SI FL  NG+D  +++ EGI +  F      ++++ 
Sbjct: 61  GRIGGTWEINFSDFGV-DDARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEMFWMLKKT 120

Query: 147 KIS-RWITFHGLYDIGYLIQAMGIVERLPRSMYEFATIIVNEVGIVRDLKCMARFCQG-- 206
           + +  W+TFHG YDI YL++     E LP +   F+  +   +G V DLK MA  C+G  
Sbjct: 121 RRNITWVTFHGSYDIAYLLKGF-TGEALPVTSERFSKAVARVLGSVYDLKVMAGRCEGLS 180

Query: 207 -KLGLRKLGKLLGQNRFELKHHAGSNSLLTALIHLKM 240
            +LGL  L    G NR    HHAGSN+ LTA++  K+
Sbjct: 181 SRLGLETLAHEFGLNRVGTAHHAGSNNELTAMVFAKV 215

[Close]

BLAST of Sed0026534 vs. ExPASy Swiss-Prot
Match: O64773 (Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana OX=3702 GN=CAF1-5 PE=2 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 4.1e-36
Identity = 85/228 (37.28%), Postives = 133/228 (58.33%), Query Frame = 0


Query: 17  QVWAYNFESEMSHLDNCLRSHTILSIDTEFPGLIMTTPWISIDEQLYEDFQFNVNHTKMI 76
           +VW +N ++EM+ + +CL+    ++IDTEFPG +  TP  + DE  Y D +FNV++T +I
Sbjct: 4   EVWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKETPMDASDEIRYRDMKFNVDNTHLI 63

Query: 77  QLGLTAVDEWGSVGGSWEFNFSDFDLTTDYYNPASISFLIENGIDFERLKREGIWMRVFA 136
           QLGLT   +   +  +WE N SDF+ +    N  SI+FL  NG+D ++++ EGI +  F 
Sbjct: 64  QLGLTLFGK--GITKTWEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIREEGIGIEEFF 123

Query: 137 GNFLHIV-RRNKISRWITFHGLYDIGYLIQAMGIVERLPRSMYEFATIIVNEVG-IVRDL 196
             F  I+  ++   RW+TF G YD  YL++ +   + LP +  EF   +   +G  V D+
Sbjct: 124 MEFSQILNEKHGKMRWVTFQGSYDKAYLLKGL-TRKPLPETSKEFDETVQQLLGRFVYDV 183

Query: 197 KCMARFCQG---KLGLRKLGKLLGQNRFELKHHAGSNSLLTALIHLKM 240
           K MA  C G   + GL+++  +L   R    HHAGS+S LTA +  K+
Sbjct: 184 KKMAGLCSGLSSRFGLQRIADVLQMRRVGKAHHAGSDSELTARVFTKL 228

[Close]

BLAST of Sed0026534 vs. ExPASy Swiss-Prot
Match: Q9SFX6 (Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana OX=3702 GN=CAF1-3 PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 5.9e-35
Identity = 85/229 (37.12%), Postives = 133/229 (58.08%), Query Frame = 0


Query: 17  QVWAYNFESEMSHLDNCLRSHTILSIDTEFPGLIMTTPWISIDEQLYEDFQFNVNHTKMI 76
           +VW +N E EM+ + +CL+  + ++IDTEFPG +  TP  + +E  Y D +FNV++T +I
Sbjct: 8   EVWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLI 67

Query: 77  QLGLTAVDEWGSVGGSWEFNFSDFDLTTDYYNPASISFLIENGIDFERLKREGIWMRVFA 136
           QLG T  D  G    +WE N SDFD    + N  SI+FL  NG++ ++++ EGI +  F 
Sbjct: 68  QLGFTLFDRRG-FAKTWEINLSDFDEHKCFKNDKSIAFLKSNGLNLDKIREEGIGIDEFF 127

Query: 137 GNFLHIV--RRNKISRWITFHGLYDIGYLIQAMGIVERLPRSMYEFATIIVNEVG-IVRD 196
            +F  I+  +  KI+ W+ F G YD  YL++ +   + LP +  EF   +   +G  V D
Sbjct: 128 RDFSQILTEKDGKIT-WVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVQQLLGKFVFD 187

Query: 197 LKCMARFCQG---KLGLRKLGKLLGQNRFELKHHAGSNSLLTALIHLKM 240
           +K +A  C G   + GL+++  +L   R    HHAGS+S LTA +  K+
Sbjct: 188 VKKIAESCSGLSSQFGLQRIADVLQMKRVGKAHHAGSDSELTARVFTKL 234

[Close]

BLAST of Sed0026534 vs. ExPASy Swiss-Prot
Match: Q9C6M9 (Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana OX=3702 GN=CAF1-4 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 7.7e-35
Identity = 84/229 (36.68%), Postives = 132/229 (57.64%), Query Frame = 0


Query: 17  QVWAYNFESEMSHLDNCLRSHTILSIDTEFPGLIMTTPWISIDEQLYEDFQFNVNHTKMI 76
           +VW +N E EM  + +CL+  + ++IDTEFPG +  TP  + +E  Y D +FNV++T +I
Sbjct: 3   EVWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLI 62

Query: 77  QLGLTAVDEWGSVGGSWEFNFSDFDLTTDYYNPASISFLIENGIDFERLKREGIWMRVFA 136
           QLG T  D  G +  +WE N SDF+    + N  SI+FL  NG++ +++  EGI +  F 
Sbjct: 63  QLGFTLFDRRG-ITKTWEINLSDFNEHKCFKNDKSIAFLKSNGLNLDKIGEEGIGIEEFF 122

Query: 137 GNFLHIVRR--NKISRWITFHGLYDIGYLIQAMGIVERLPRSMYEFATIIVNEVG-IVRD 196
            +F  I++    KI+ W+ F G YD  YL++ +   + LP +  EF   +   +G  V D
Sbjct: 123 RDFSQILKEKDGKIT-WVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVEQLLGKFVFD 182

Query: 197 LKCMARFCQG---KLGLRKLGKLLGQNRFELKHHAGSNSLLTALIHLKM 240
           +K +A  C G   + GL+++  +L   R    HHAGS+S LTA +  K+
Sbjct: 183 VKKIAESCSGLSSRFGLQRIADVLQMKRVGKAHHAGSDSELTARVFTKL 229

[Close]

BLAST of Sed0026534 vs. ExPASy TrEMBL
Match: A0A6J1I6H7 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111469633 PE=3 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 1.2e-86
Identity = 160/283 (56.54%), Postives = 207/283 (73.14%), Query Frame = 0


Query: 1   MDGRNRNPSGENDKIRQVWAYNFESEMSHLDNCLRSHTILSIDTEFPGLIMTTPWISIDE 60
           MD   + P G+N  I +VWAYN + E+  LD+CL  + ++SIDTEFPG I  TPW +IDE
Sbjct: 1   MDRIVQGPRGDNPLITEVWAYNLDDEILRLDHCLLLYPVMSIDTEFPGCIKRTPWGTIDE 60

Query: 61  QLYEDFQFNVNHTKMIQLGLTAVDEWGSVGGSWEFNFSDFDLTTDYYNPASISFLIENGI 120
           +LY DF+FNVN TK+IQLG+T  DE G++GG+WEFNFSDFD   D +NPASI FL +NG+
Sbjct: 61  ELYADFRFNVNQTKVIQLGVTVSDESGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL 120

Query: 121 DFERLKREGIWMRVFAGNFLHIVRRNKISRWITFHGLYDIGYLIQAMGIVERLPRSMYEF 180
           DF +LK++GI +R FA  FL+ +R++ I +WITFHGLYDIGYLI A+G+V+ LP ++ EF
Sbjct: 121 DFGKLKKDGIKVRKFAIRFLYTMRKHAIHQWITFHGLYDIGYLILALGVVKSLPETLGEF 180

Query: 181 ATIIVNEVGIVRDLKCMARFCQ----GKLGLRKLGKLLGQNRFELKHHAGSNSLLTALIH 240
             I+   VG VRDLK MARFC+    G LGL KLG+LL Q RF LKHHAGS+SL+TAL+H
Sbjct: 181 EWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLH 240

Query: 241 LKMEQCYDLGPQICDGFLYGFSNKL-KYMDMQTPAVTPLYLCS 279
            KM Q YD   +ICDGFLYG S K  +++ MQ+  +     C+
Sbjct: 241 EKMLQLYDFNAEICDGFLYGLSKKFEEFVGMQSHRIYVQIKCA 283

[Close]

BLAST of Sed0026534 vs. ExPASy TrEMBL
Match: A0A6J1G7T4 (Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111451626 PE=3 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 1.2e-86
Identity = 159/266 (59.77%), Postives = 199/266 (74.81%), Query Frame = 0


Query: 1   MDGRNRNPSGENDKIRQVWAYNFESEMSHLDNCLRSHTILSIDTEFPGLIMTTPWISIDE 60
           MD   R P G+N  IR+VWAYN + E+  LD CL S++I+SIDTEFPG I  TPW + DE
Sbjct: 1   MDRIVRGPRGDNPLIREVWAYNLDHEIIRLDRCLLSYSIMSIDTEFPGCIKRTPWGTFDE 60

Query: 61  QLYEDFQFNVNHTKMIQLGLTAVDEWGSVGGSWEFNFSDFDLTTDYYNPASISFLIENGI 120
           +LY DF+FNVN TK+IQLG+T  DE G++GG+WEFNFSDFD   D +NPASI FL +NG+
Sbjct: 61  ELYADFRFNVNQTKVIQLGVTVSDESGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL 120

Query: 121 DFERLKREGIWMRVFAGNFLHIVRRNKISRWITFHGLYDIGYLIQAMGIVERLPRSMYEF 180
           DF +LK++GI +R FA  FL+ + ++ I RW+TFHGLYDIGYL+ AMG+V+ LP ++ EF
Sbjct: 121 DFGKLKKDGIKVRKFAIRFLYTLGKHAIYRWVTFHGLYDIGYLMLAMGVVKSLPETLGEF 180

Query: 181 ATIIVNEVGIVRDLKCMARFCQ----GKLGLRKLGKLLGQNRFELKHHAGSNSLLTALIH 240
             I+   VG VRDLK MARFC+    G LGL KLG+LL Q RF LKHHAGS+SL+TAL+H
Sbjct: 181 KWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLH 240

Query: 241 LKMEQCYDLGPQICDGFLYGFSNKLK 263
            KM Q YD   +ICDGFLYG S K +
Sbjct: 241 EKMLQRYDFHAEICDGFLYGLSKKFE 266

[Close]

BLAST of Sed0026534 vs. ExPASy TrEMBL
Match: A0A6J1I4S7 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111469631 PE=3 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 1.5e-86
Identity = 160/283 (56.54%), Postives = 206/283 (72.79%), Query Frame = 0


Query: 1   MDGRNRNPSGENDKIRQVWAYNFESEMSHLDNCLRSHTILSIDTEFPGLIMTTPWISIDE 60
           MD   + P G+N  I +VWAYN + E+  LD+CL  + ++SIDTEFPG I  TPW +IDE
Sbjct: 1   MDRIVQGPRGDNPLITEVWAYNLDDEILRLDHCLLLYPVMSIDTEFPGCIKRTPWGTIDE 60

Query: 61  QLYEDFQFNVNHTKMIQLGLTAVDEWGSVGGSWEFNFSDFDLTTDYYNPASISFLIENGI 120
           +LY DF+FNVN TK+IQLG+T  DE G +GG+WEFNFSDFD   D +NPASI FL +NG+
Sbjct: 61  ELYADFRFNVNQTKVIQLGVTVSDESGDIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL 120

Query: 121 DFERLKREGIWMRVFAGNFLHIVRRNKISRWITFHGLYDIGYLIQAMGIVERLPRSMYEF 180
           DF +LK++GI +R FA  FL+ +R++ I +WITFHGLYDIGYLI A+G+V+ LP ++ EF
Sbjct: 121 DFGKLKKDGIKVRKFAIRFLYTMRKHAIHQWITFHGLYDIGYLILALGVVKSLPETLGEF 180

Query: 181 ATIIVNEVGIVRDLKCMARFCQ----GKLGLRKLGKLLGQNRFELKHHAGSNSLLTALIH 240
             I+   VG VRDLK MARFC+    G LGL KLG+LL Q RF LKHHAGS+SL+TAL+H
Sbjct: 181 EWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLH 240

Query: 241 LKMEQCYDLGPQICDGFLYGFSNKL-KYMDMQTPAVTPLYLCS 279
            KM Q YD   +ICDGFLYG S K  +++ MQ+  +     C+
Sbjct: 241 EKMLQLYDFNAEICDGFLYGLSKKFEEFVGMQSHRIYVQIKCA 283

[Close]

BLAST of Sed0026534 vs. ExPASy TrEMBL
Match: A0A6J1I3Q4 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111469634 PE=3 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 3.4e-86
Identity = 159/283 (56.18%), Postives = 206/283 (72.79%), Query Frame = 0


Query: 1   MDGRNRNPSGENDKIRQVWAYNFESEMSHLDNCLRSHTILSIDTEFPGLIMTTPWISIDE 60
           MD   + P G+N  I +VWAYN + E+  LD+CL  + ++SIDTEFPG I  TPW +IDE
Sbjct: 1   MDRIVQGPRGDNPLITEVWAYNLDDEILRLDHCLLLYPVMSIDTEFPGCIKRTPWGTIDE 60

Query: 61  QLYEDFQFNVNHTKMIQLGLTAVDEWGSVGGSWEFNFSDFDLTTDYYNPASISFLIENGI 120
           +LY DF+FNVN TK+IQLG+T  DE G++GG+WEFNFSDFD   D +NPASI FL +NG+
Sbjct: 61  ELYADFRFNVNQTKVIQLGVTVSDESGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL 120

Query: 121 DFERLKREGIWMRVFAGNFLHIVRRNKISRWITFHGLYDIGYLIQAMGIVERLPRSMYEF 180
           DF +LK++GI +R FA  FL+ +R++ I +WITFHGLYDIGYLI A+G+V+ LP ++ EF
Sbjct: 121 DFGKLKKDGIKVRKFAIRFLYTMRKHAIHQWITFHGLYDIGYLILALGVVKSLPETLGEF 180

Query: 181 ATIIVNEVGIVRDLKCMARFCQ----GKLGLRKLGKLLGQNRFELKHHAGSNSLLTALIH 240
             I+   VG VRDLK MARFC+    G LGL KLG+LL Q RF LKHHAGS+SL+T L+H
Sbjct: 181 EWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTVLLH 240

Query: 241 LKMEQCYDLGPQICDGFLYGFSNKL-KYMDMQTPAVTPLYLCS 279
            KM Q YD   +ICDGFLYG S K  +++ MQ+  +     C+
Sbjct: 241 EKMLQLYDFNAEICDGFLYGLSKKFEEFVGMQSHRIYVQIKCA 283

[Close]

BLAST of Sed0026534 vs. ExPASy TrEMBL
Match: A0A6J1I1E6 (putative CCR4-associated factor 1 homolog 8 OS=Cucurbita maxima OX=3661 GN=LOC111469635 PE=4 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 1.3e-85
Identity = 159/283 (56.18%), Postives = 206/283 (72.79%), Query Frame = 0


Query: 1   MDGRNRNPSGENDKIRQVWAYNFESEMSHLDNCLRSHTILSIDTEFPGLIMTTPWISIDE 60
           MD   + P G+N  I +VWAYN + E+  LD+CL  + ++SIDTEFPG I  TPW +IDE
Sbjct: 1   MDRIVQGPRGDNPLITEVWAYNLDDEILRLDHCLLLYPVMSIDTEFPGCIKRTPWGTIDE 60

Query: 61  QLYEDFQFNVNHTKMIQLGLTAVDEWGSVGGSWEFNFSDFDLTTDYYNPASISFLIENGI 120
           +LY DF+FNVN TK+IQL +T  DE G++GG+WEFNFSDFD   D +NPASI FL +NG+
Sbjct: 61  ELYADFRFNVNQTKVIQLCVTVSDESGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGL 120

Query: 121 DFERLKREGIWMRVFAGNFLHIVRRNKISRWITFHGLYDIGYLIQAMGIVERLPRSMYEF 180
           DF +LK++GI +R FA  FL+ +R++ I +WITFHGLYDIGYLI A+G+V+ LP ++ EF
Sbjct: 121 DFGKLKKDGIKVRKFAIRFLYTMRKHAIHQWITFHGLYDIGYLILALGVVKSLPETLGEF 180

Query: 181 ATIIVNEVGIVRDLKCMARFCQ----GKLGLRKLGKLLGQNRFELKHHAGSNSLLTALIH 240
             I+   VG VRDLK MARFC+    G LGL KLG+LL Q RF LKHHAGS+SL+TAL+H
Sbjct: 181 EWIVARRVGTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLH 240

Query: 241 LKMEQCYDLGPQICDGFLYGFSNKL-KYMDMQTPAVTPLYLCS 279
            KM Q YD   +ICDGFLYG S K  +++ MQ+  +     C+
Sbjct: 241 EKMLQLYDFNAEICDGFLYGLSKKFEEFVGMQSHRIYVQIKCA 283

[Close]

BLAST of Sed0026534 vs. TAIR 10
Match: AT1G06450.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 175.3 bits (443), Expect = 7.1e-44
Identity = 97/263 (36.88%), Postives = 145/263 (55.13%), Query Frame = 0


Query: 16  RQVWAYNFESEMSHLDNCLRSHTILSIDTEFPGLIMTTPWISIDEQLYEDFQFNVNHTKM 75
           R+VW  N + EM+ +  CL+   +++ DTE+PG+I  T + S  ++ Y   + NV +TK+
Sbjct: 10  RRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTYFDSSSDECYRAMKGNVENTKL 69

Query: 76  IQLGLTAVDEWGSVGGSWEFNFSDFDLTTDYYNPASISFLIENGIDFERLKREGIWM--R 135
           IQ G T  +  G +GG WE NFS+F   +D  N  SI FL  +G+D ++++ EG+ M   
Sbjct: 70  IQCGFTLFNAKGEIGGVWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIRDEGVDMFGY 129

Query: 136 VFAGNFLHIVRRNKISRWITFHGLYDIGYLIQAMGIVERLPRSMYEFATIIVNEVGIVRD 195
            F    + + R  K   ++TF G YD  Y +  +    +LP +  EFAT +V   G V D
Sbjct: 130 GFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILN-HGKLPETHGEFATEVVKVFGQVYD 189

Query: 196 LKCMARFCQG---KLGLRKLGKLLGQNRFELKHHAGSNSLLTALIHLKMEQCYDLGPQIC 255
            K MA FC+G    LGL KL +LL   R    HHAGS+SL+TAL+ +K++  Y+   +  
Sbjct: 190 TKVMAGFCEGLGEHLGLSKLAQLLQITRVGRAHHAGSDSLMTALVFIKLKHVYE-DSRFA 249

Query: 256 DGFLYGFSNKLKYMDMQTPAVTP 274
            G +YG   K   +    PA  P
Sbjct: 250 RGLIYGI-GKSNLVAAPAPAPVP 269

[Close]

BLAST of Sed0026534 vs. TAIR 10
Match: AT3G44240.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 167.2 bits (422), Expect = 1.9e-41
Identity = 90/217 (41.47%), Postives = 129/217 (59.45%), Query Frame = 0


Query: 27  MSHLDNCLRSHTILSIDTEFPGLIMTTPWISIDEQLYEDFQFNVNHTKMIQLGLTAVDEW 86
           MS +++CLRS+  ++IDTEFP  +  T   + DE+ Y D  F+V+  K+IQLGLT  D  
Sbjct: 1   MSLIEDCLRSYRFIAIDTEFPSTLRETTQHATDEERYMDMSFSVDRAKLIQLGLTLFDIN 60

Query: 87  GSVGGSWEFNFSDFDLTTDYYNPASISFLIENGIDFERLKREGIWMRVFAGNFLHIVRRN 146
           G +GG+WE NFSDF +  D  N  SI FL  NG+D  +++ EGI +  F      ++++ 
Sbjct: 61  GRIGGTWEINFSDFGV-DDARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEMFWMLKKT 120

Query: 147 KIS-RWITFHGLYDIGYLIQAMGIVERLPRSMYEFATIIVNEVGIVRDLKCMARFCQG-- 206
           + +  W+TFHG YDI YL++     E LP +   F+  +   +G V DLK MA  C+G  
Sbjct: 121 RRNITWVTFHGSYDIAYLLKGF-TGEALPVTSERFSKAVARVLGSVYDLKVMAGRCEGLS 180

Query: 207 -KLGLRKLGKLLGQNRFELKHHAGSNSLLTALIHLKM 240
            +LGL  L    G NR    HHAGSN+ LTA++  K+
Sbjct: 181 SRLGLETLAHEFGLNRVGTAHHAGSNNELTAMVFAKV 215

[Close]

BLAST of Sed0026534 vs. TAIR 10
Match: AT1G61470.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 153.3 bits (386), Expect = 2.9e-37
Identity = 85/228 (37.28%), Postives = 133/228 (58.33%), Query Frame = 0


Query: 17  QVWAYNFESEMSHLDNCLRSHTILSIDTEFPGLIMTTPWISIDEQLYEDFQFNVNHTKMI 76
           +VW +N ++EM+ + +CL+    ++IDTEFPG +  TP  + DE  Y D +FNV++T +I
Sbjct: 4   EVWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKETPMDASDEIRYRDMKFNVDNTHLI 63

Query: 77  QLGLTAVDEWGSVGGSWEFNFSDFDLTTDYYNPASISFLIENGIDFERLKREGIWMRVFA 136
           QLGLT   +   +  +WE N SDF+ +    N  SI+FL  NG+D ++++ EGI +  F 
Sbjct: 64  QLGLTLFGK--GITKTWEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIREEGIGIEEFF 123

Query: 137 GNFLHIV-RRNKISRWITFHGLYDIGYLIQAMGIVERLPRSMYEFATIIVNEVG-IVRDL 196
             F  I+  ++   RW+TF G YD  YL++ +   + LP +  EF   +   +G  V D+
Sbjct: 124 MEFSQILNEKHGKMRWVTFQGSYDKAYLLKGL-TRKPLPETSKEFDETVQQLLGRFVYDV 183

Query: 197 KCMARFCQG---KLGLRKLGKLLGQNRFELKHHAGSNSLLTALIHLKM 240
           K MA  C G   + GL+++  +L   R    HHAGS+S LTA +  K+
Sbjct: 184 KKMAGLCSGLSSRFGLQRIADVLQMRRVGKAHHAGSDSELTARVFTKL 228

[Close]

BLAST of Sed0026534 vs. TAIR 10
Match: AT1G27820.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 149.4 bits (376), Expect = 4.2e-36
Identity = 85/229 (37.12%), Postives = 133/229 (58.08%), Query Frame = 0


Query: 17  QVWAYNFESEMSHLDNCLRSHTILSIDTEFPGLIMTTPWISIDEQLYEDFQFNVNHTKMI 76
           +VW +N E EM+ + +CL+  + ++IDTEFPG +  TP  + +E  Y D +FNV++T +I
Sbjct: 8   EVWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLI 67

Query: 77  QLGLTAVDEWGSVGGSWEFNFSDFDLTTDYYNPASISFLIENGIDFERLKREGIWMRVFA 136
           QLG T  D  G    +WE N SDFD    + N  SI+FL  NG++ ++++ EGI +  F 
Sbjct: 68  QLGFTLFDRRG-FAKTWEINLSDFDEHKCFKNDKSIAFLKSNGLNLDKIREEGIGIDEFF 127

Query: 137 GNFLHIV--RRNKISRWITFHGLYDIGYLIQAMGIVERLPRSMYEFATIIVNEVG-IVRD 196
            +F  I+  +  KI+ W+ F G YD  YL++ +   + LP +  EF   +   +G  V D
Sbjct: 128 RDFSQILTEKDGKIT-WVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVQQLLGKFVFD 187

Query: 197 LKCMARFCQG---KLGLRKLGKLLGQNRFELKHHAGSNSLLTALIHLKM 240
           +K +A  C G   + GL+++  +L   R    HHAGS+S LTA +  K+
Sbjct: 188 VKKIAESCSGLSSQFGLQRIADVLQMKRVGKAHHAGSDSELTARVFTKL 234

[Close]

BLAST of Sed0026534 vs. TAIR 10
Match: AT1G27890.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 149.1 bits (375), Expect = 5.4e-36
Identity = 84/229 (36.68%), Postives = 132/229 (57.64%), Query Frame = 0


Query: 17  QVWAYNFESEMSHLDNCLRSHTILSIDTEFPGLIMTTPWISIDEQLYEDFQFNVNHTKMI 76
           +VW +N E EM  + +CL+  + ++IDTEFPG +  TP  + +E  Y D +FNV++T +I
Sbjct: 3   EVWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLI 62

Query: 77  QLGLTAVDEWGSVGGSWEFNFSDFDLTTDYYNPASISFLIENGIDFERLKREGIWMRVFA 136
           QLG T  D  G +  +WE N SDF+    + N  SI+FL  NG++ +++  EGI +  F 
Sbjct: 63  QLGFTLFDRRG-ITKTWEINLSDFNEHKCFKNDKSIAFLKSNGLNLDKIGEEGIGIEEFF 122

Query: 137 GNFLHIVRR--NKISRWITFHGLYDIGYLIQAMGIVERLPRSMYEFATIIVNEVG-IVRD 196
            +F  I++    KI+ W+ F G YD  YL++ +   + LP +  EF   +   +G  V D
Sbjct: 123 RDFSQILKEKDGKIT-WVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVEQLLGKFVFD 182

Query: 197 LKCMARFCQG---KLGLRKLGKLLGQNRFELKHHAGSNSLLTALIHLKM 240
           +K +A  C G   + GL+++  +L   R    HHAGS+S LTA +  K+
Sbjct: 183 VKKIAESCSGLSSRFGLQRIADVLQMKRVGKAHHAGSDSELTARVFTKL 229

The following BLAST results are available for this feature:

BLAST of Sed0026534 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895744.1	2.8e-90	59.35	putative CCR4-associated factor 1 homolog 8 [Benincasa hispida]	[more]
XP_023533172.1	1.2e-88	57.60	putative CCR4-associated factor 1 homolog 8 [Cucurbita pepo subsp. pepo]	[more]
KAG7027009.1	1.3e-87	60.53	putative CCR4-associated factor 1-like 1, partial [Cucurbita argyrosperma subsp....	[more]
KAG6604930.1	2.2e-87	60.15	putative CCR4-associated factor 1-like 1, partial [Cucurbita argyrosperma subsp....	[more]
XP_022947868.1	2.4e-86	59.77	putative CCR4-associated factor 1 homolog 8 [Cucurbita moschata]	[more]

BLAST of Sed0026534 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SHJ0	1.0e-42	36.88	Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9LXM4	2.7e-40	41.47	Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
O64773	4.1e-36	37.28	Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9SFX6	5.9e-35	37.12	Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9C6M9	7.7e-35	36.68	Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]

BLAST of Sed0026534 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I6H7	1.2e-86	56.54	Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111469633 PE=3 S...	[more]
A0A6J1G7T4	1.2e-86	59.77	Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111451626 PE=3...	[more]
A0A6J1I4S7	1.5e-86	56.54	Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111469631 PE=3 S...	[more]
A0A6J1I3Q4	3.4e-86	56.18	Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111469634 PE=3 S...	[more]
A0A6J1I1E6	1.3e-85	56.18	putative CCR4-associated factor 1 homolog 8 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]

BLAST of Sed0026534 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G06450.1	7.1e-44	36.88	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT3G44240.1	1.9e-41	41.47	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G61470.1	2.9e-37	37.28	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G27820.1	4.2e-36	37.12	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G27890.1	5.4e-36	36.68	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006941	Ribonuclease CAF1	PFAM	PF04857	CAF1	coord: 18..130 e-value: 1.6E-9 score: 37.5
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 5..261 e-value: 2.7E-59 score: 202.4
None	No IPR available	PANTHER	PTHR10797:SF57	CCR4-ASSOCIATED FACTOR 1 HOMOLOG 3-RELATED	coord: 13..271
IPR039637	CCR4-NOT transcription complex subunit 7/8/Pop2	PANTHER	PTHR10797	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT	coord: 13..271
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 12..243

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0026534.1	Sed0026534.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016070	RNA metabolic process
cellular_component	GO:0030014	CCR4-NOT complex
cellular_component	GO:0005622	intracellular anatomical structure
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity