Sed0026530 (gene) Chayote v1

Overview


Name	Sed0026530
Type	gene
Organism	Sechium edule (Chayote v1)
Description	MYND-type domain-containing protein
Location	LG06: 42229359 .. 42231631 (-)
RNA-Seq Expression	Sed0026530
Synteny	Sed0026530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTGTCCTTTGAGTTCATTTTTGCGAAGGTGATTGTGGAAGAAATCTTAAAACCTGCTAGCGATTTTCTGGTAAGCGTTCGATTGATATTGATTTCAATTTCGATTCATTTTATTGCTGCTTGAATCTGGTGTCGTTCAATTGAATTATCAATTTCTATCGAGTATTTTGCGATTTTCGTGTTTGGATTACCTAGGGTTTGCACTTGCGAATTTCTAGATCCGGTTTGGTGTAGTTTTAGATAGATCCTGATTGTTGTAGATGAAGAATATTTCTGATTCAGTTAAGTTTCATGATAGAACCACGCTTTTGATTTTTCTTGAGCGGAAACGGGGGATTTGAGTAAATTTCATGTTCGATGATTTGTTGATTTGGCGTTTCTTCATGTAATTCCGGTAATTTATCAGGAAGAAATAAGAAATGAAGTTCATCATGGAGTTTGCTGAGGATTTGGTGTTGAGACTTATGGAGGATCCAAAAGAAAGGGATCGGAAATTCCGAGAGCACGTATACGCAGTGAAGGATCGGTGCCAAAAGACGAAGGAGATGTGGAGCCTTCCGCTTCGTCCTTATGGATTTTGGACGTTTGAGCGCCACAATTCTCAGCTGCAGTGGGATGCACAAATCAGCCAGGTTGCTGGTCGAAGGGATCCTTATGATGATCTGCTTCAGGACAAAACCAACTAATGATTTAAGAAGGTTCTATTTCTAAGCTTTGATTTGGTTTCGTTATTATGTTGATTGGATCTTGAAACCTTTATTATTGATATTGAGTGAACTATCTTTGGTTTTAAATTCATGTAATGAGTGAACTATCTTTGGTTTTAAATTCATGTAATGAGTGAACTATCTTTGGTTTTAAATTCATGTAATGGCGTGGGTCTAATGTCTCTTATCGTTTGGTGGGTATTTGGGGGAAAGTAGATTTGAACAGTTGTTGGGGTAACGATTATCGATGGGTAATGATAGGTAACTATTACTTGTATTTGGGGTGTCAAGAATGGTTAGGAGTAACCATTGTCTTGAGGATTATTTGGTAGTATGGTATTTGACATTAAGAGTATATAGTATTACCAATAGAAATGCTGCTGAAGCATAAATTAGACTTGCACGTCTATGTTTTTAAAGAGTAAGGATTGGATGAAGTTTTCTTTTTTTAGTTGCATGTTGAATGTTTGGTTAGAAATGCAAGGGCAGAGAATGGTTAGGGGATAACCATTGCTTGAGGTGCCTAGAATTGTTAGGAGTATTACCCTGGGCTAGGATGCACGAACCTACTATTTTGACGAAGTATTTGTGTTGGACACATGTACGACACCGATACTTCCGGACATGTGACTCTCAAAATTTCGTGTCCACCTTTATTTTTTATTTTTTTTTTTGTTTCAAACACTTCACAAACACACCATGGACACCTCATTTACGATTTATTTATTTCAAACAGTCGATGACACAATAACAGGTAGTGTTGGTGGGGCCGTCAATGACAACATCCATTGAAGGTATATGGGAGTAAAATCGAAAATGGAAAAAAGAGAGAGAAAATGAGGTAAAAACTTGAATTTTAAAAAAAATTTAGGGTGGGTTTATAACCAACTAAAATATTTTGGATTTGATCTTTTAATACTATATCATAAAAAATAATGCATCCTTGACGTATTCGTGTCCACTATTTTTAAACAATAGTGTGTCTACATGTCTGTAATTCTTAGATATTGGGTATAGTGAAGCGAAGCTCTGATTTCCCTCTTTCCAAAAAAAAAAATGTTAGGAGTAATGTTTTAGGTGTTTGGGGTGATCATTTTATGTTTGGAGTGCAGAGAATGGTTAACGGTTATTTTTTTGTGTGTGTTTGGATTGCATGCAGATAATGGTCAGTGATAGTTTTGTTTGTTGGCTCTTAAGATATATCTGCTGATGTTGTTCTTGAAATACTATGCAGAATACTTGCAAGAGCTCCGAAATCGCTGGTGGAAACTGGGTAGCTCGAGCAATGGTTTGAACGCTCATTTGTTGTTGTTTTAACTTCATGTGCTGTTTGAGCACTTAATGGTTTGAATTGTCAAACGAGATTTTGGTGCTGGAATAAACTTGCTTTTAAGATCATATTTCAAATTTGTGAATTTGAGCACATTGCTTTTTACTTAATCGTATGCGTTTTGCATTACTTTTTTTTGTCCTCACCTCAAATTTCTTCTCATAGTTACTATTATCAGTTTTGTTACGAATTGCCATGTAACTAGTTACTATTATCCTCACTTACCAATTAACGC

mRNA sequence

GTTTGTCCTTTGAGTTCATTTTTGCGAAGGTGATTGTGGAAGAAATCTTAAAACCTGCTAGCGATTTTCTGGAAGAAATAAGAAATGAAGTTCATCATGGAGTTTGCTGAGGATTTGGTGTTGAGACTTATGGAGGATCCAAAAGAAAGGGATCGGAAATTCCGAGAGCACGTATACGCAGTGAAGGATCGGTGCCAAAAGACGAAGGAGATGTGGAGCCTTCCGCTTCGTCCTTATGGATTTTGGACGTTTGAGCGCCACAATTCTCAGCTGCAGTGGGATGCACAAATCAGCCAGGTTGCTGGTCGAAGGGATCCTTATGATGATCTGCTTCAGGACAAAACCAACTAATGATTTAAGAAGAATACTTGCAAGAGCTCCGAAATCGCTGGTGGAAACTGGGTAGCTCGAGCAATGGTTTGAACGCTCATTTGTTGTTGTTTTAACTTCATGTGCTGTTTGAGCACTTAATGGTTTGAATTGTCAAACGAGATTTTGGTGCTGGAATAAACTTGCTTTTAAGATCATATTTCAAATTTGTGAATTTGAGCACATTGCTTTTTACTTAATCGTATGCGTTTTGCATTACTTTTTTTTGTCCTCACCTCAAATTTCTTCTCATAGTTACTATTATCAGTTTTGTTACGAATTGCCATGTAACTAGTTACTATTATCCTCACTTACCAATTAACGC

Coding sequence (CDS)

ATGAAGTTCATCATGGAGTTTGCTGAGGATTTGGTGTTGAGACTTATGGAGGATCCAAAAGAAAGGGATCGGAAATTCCGAGAGCACGTATACGCAGTGAAGGATCGGTGCCAAAAGACGAAGGAGATGTGGAGCCTTCCGCTTCGTCCTTATGGATTTTGGACGTTTGAGCGCCACAATTCTCAGCTGCAGTGGGATGCACAAATCAGCCAGGTTGCTGGTCGAAGGGATCCTTATGATGATCTGCTTCAGGACAAAACCAACTAA

Protein sequence

MKFIMEFAEDLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSLPLRPYGFWTFERHNSQLQWDAQISQVAGRRDPYDDLLQDKTN

Homology

[Close]

BLAST of Sed0026530 vs. NCBI nr
Match: XP_008446038.1 (PREDICTED: uncharacterized protein LOC103488888 [Cucumis melo] >XP_008446039.1 PREDICTED: uncharacterized protein LOC103488888 [Cucumis melo] >KAA0034194.1 uncharacterized protein E6C27_scaffold65G001900 [Cucumis melo var. makuwa] >TYK15726.1 uncharacterized protein E5676_scaffold35G002250 [Cucumis melo var. makuwa])

HSP 1 Score: 175.3 bits (443), Expect = 2.4e-40
Identity = 81/88 (92.05%), Postives = 84/88 (95.45%), Query Frame = 0


Query: 1  MKFIMEFAEDLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSLPLRPYGFWTFERHN 60
          MKFIMEFAEDLVLRLMEDPKERDR+FREHVYAVKDRCQKTKEMWSLPLRPYGFWTF+RHN
Sbjct: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHVYAVKDRCQKTKEMWSLPLRPYGFWTFDRHN 60

Query: 61 SQLQWDAQISQVAGRRDPYDDLLQDKTN 89
          SQL+WD QISQV GRRDPYDDLLQD  N
Sbjct: 61 SQLKWDPQISQVPGRRDPYDDLLQDFNN 88

[Close]

BLAST of Sed0026530 vs. NCBI nr
Match: XP_022151828.1 (uncharacterized protein LOC111019716 [Momordica charantia])

HSP 1 Score: 172.2 bits (435), Expect = 2.0e-39
Identity = 78/88 (88.64%), Postives = 83/88 (94.32%), Query Frame = 0


Query: 1  MKFIMEFAEDLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSLPLRPYGFWTFERHN 60
          MKF+MEFAE+LV+RLMEDPKERDRKFREH+YAVKDRCQKTKEMWS PLRPYGFWTFERHN
Sbjct: 1  MKFVMEFAENLVVRLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60

Query: 61 SQLQWDAQISQVAGRRDPYDDLLQDKTN 89
          SQLQWDAQISQ  GRRDPYDD+LQD  N
Sbjct: 61 SQLQWDAQISQAPGRRDPYDDMLQDINN 88

[Close]

BLAST of Sed0026530 vs. NCBI nr
Match: XP_011655561.1 (uncharacterized protein LOC101213251 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 2.7e-39
Identity = 77/88 (87.50%), Postives = 83/88 (94.32%), Query Frame = 0


Query: 1  MKFIMEFAEDLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSLPLRPYGFWTFERHN 60
          MKFIMEFAEDLVLRLMEDPKERDR+FREH+YA+KDRCQKTKEMWS PLRPYGFWTF+RHN
Sbjct: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 60

Query: 61 SQLQWDAQISQVAGRRDPYDDLLQDKTN 89
          SQL+WD QISQV GRRDPYDD+LQD  N
Sbjct: 61 SQLKWDPQISQVPGRRDPYDDMLQDFNN 88

[Close]

BLAST of Sed0026530 vs. NCBI nr
Match: KAE8648679.1 (hypothetical protein Csa_008887 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 2.7e-39
Identity = 77/88 (87.50%), Postives = 83/88 (94.32%), Query Frame = 0


Query: 1   MKFIMEFAEDLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSLPLRPYGFWTFERHN 60
           MKFIMEFAEDLVLRLMEDPKERDR+FREH+YA+KDRCQKTKEMWS PLRPYGFWTF+RHN
Sbjct: 46  MKFIMEFAEDLVLRLMEDPKERDRRFREHIYAIKDRCQKTKEMWSYPLRPYGFWTFDRHN 105

Query: 61  SQLQWDAQISQVAGRRDPYDDLLQDKTN 89
           SQL+WD QISQV GRRDPYDD+LQD  N
Sbjct: 106 SQLKWDPQISQVPGRRDPYDDMLQDFNN 133

[Close]

BLAST of Sed0026530 vs. NCBI nr
Match: XP_038891434.1 (uncharacterized protein LOC120080854 [Benincasa hispida] >XP_038891435.1 uncharacterized protein LOC120080854 [Benincasa hispida])

HSP 1 Score: 171.8 bits (434), Expect = 2.7e-39
Identity = 78/88 (88.64%), Postives = 83/88 (94.32%), Query Frame = 0


Query: 1  MKFIMEFAEDLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSLPLRPYGFWTFERHN 60
          MKF+MEFAE+LVLRLMEDPKERDRKFREH+YAVKDRCQKTKEMWS PLRPYGFWTFERHN
Sbjct: 1  MKFVMEFAENLVLRLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60

Query: 61 SQLQWDAQISQVAGRRDPYDDLLQDKTN 89
          SQL+WDAQISQ  GRRDPYDD+LQD  N
Sbjct: 61 SQLKWDAQISQAPGRRDPYDDMLQDINN 88

[Close]

BLAST of Sed0026530 vs. ExPASy TrEMBL
Match: A0A1S3BE41 (uncharacterized protein LOC103488888 OS=Cucumis melo OX=3656 GN=LOC103488888 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.2e-40
Identity = 81/88 (92.05%), Postives = 84/88 (95.45%), Query Frame = 0


Query: 1  MKFIMEFAEDLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSLPLRPYGFWTFERHN 60
          MKFIMEFAEDLVLRLMEDPKERDR+FREHVYAVKDRCQKTKEMWSLPLRPYGFWTF+RHN
Sbjct: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHVYAVKDRCQKTKEMWSLPLRPYGFWTFDRHN 60

Query: 61 SQLQWDAQISQVAGRRDPYDDLLQDKTN 89
          SQL+WD QISQV GRRDPYDDLLQD  N
Sbjct: 61 SQLKWDPQISQVPGRRDPYDDLLQDFNN 88

[Close]

BLAST of Sed0026530 vs. ExPASy TrEMBL
Match: A0A5A7SSK1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002250 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.2e-40
Identity = 81/88 (92.05%), Postives = 84/88 (95.45%), Query Frame = 0


Query: 1  MKFIMEFAEDLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSLPLRPYGFWTFERHN 60
          MKFIMEFAEDLVLRLMEDPKERDR+FREHVYAVKDRCQKTKEMWSLPLRPYGFWTF+RHN
Sbjct: 1  MKFIMEFAEDLVLRLMEDPKERDRRFREHVYAVKDRCQKTKEMWSLPLRPYGFWTFDRHN 60

Query: 61 SQLQWDAQISQVAGRRDPYDDLLQDKTN 89
          SQL+WD QISQV GRRDPYDDLLQD  N
Sbjct: 61 SQLKWDPQISQVPGRRDPYDDLLQDFNN 88

[Close]

BLAST of Sed0026530 vs. ExPASy TrEMBL
Match: A0A6J1DD92 (uncharacterized protein LOC111019716 OS=Momordica charantia OX=3673 GN=LOC111019716 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 9.8e-40
Identity = 78/88 (88.64%), Postives = 83/88 (94.32%), Query Frame = 0


Query: 1  MKFIMEFAEDLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSLPLRPYGFWTFERHN 60
          MKF+MEFAE+LV+RLMEDPKERDRKFREH+YAVKDRCQKTKEMWS PLRPYGFWTFERHN
Sbjct: 1  MKFVMEFAENLVVRLMEDPKERDRKFREHLYAVKDRCQKTKEMWSYPLRPYGFWTFERHN 60

Query: 61 SQLQWDAQISQVAGRRDPYDDLLQDKTN 89
          SQLQWDAQISQ  GRRDPYDD+LQD  N
Sbjct: 61 SQLQWDAQISQAPGRRDPYDDMLQDINN 88

[Close]

BLAST of Sed0026530 vs. ExPASy TrEMBL
Match: A0A6J1K907 (uncharacterized protein LOC111493347 OS=Cucurbita maxima OX=3661 GN=LOC111493347 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 2.9e-39
Identity = 79/88 (89.77%), Postives = 82/88 (93.18%), Query Frame = 0


Query: 1  MKFIMEFAEDLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSLPLRPYGFWTFERHN 60
          MKFIMEFAE+LVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWS P+RPYGFWTFERHN
Sbjct: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60

Query: 61 SQLQWDAQISQVAGRRDPYDDLLQDKTN 89
           QL+WDAQISQV GRRDPYDDLL D  N
Sbjct: 61 CQLRWDAQISQVPGRRDPYDDLLTDINN 88

[Close]

BLAST of Sed0026530 vs. ExPASy TrEMBL
Match: A0A6J1GWE2 (uncharacterized protein LOC111458190 OS=Cucurbita moschata OX=3662 GN=LOC111458190 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 2.9e-39
Identity = 79/88 (89.77%), Postives = 82/88 (93.18%), Query Frame = 0


Query: 1  MKFIMEFAEDLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSLPLRPYGFWTFERHN 60
          MKFIMEFAE+LVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWS P+RPYGFWTFERHN
Sbjct: 1  MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHN 60

Query: 61 SQLQWDAQISQVAGRRDPYDDLLQDKTN 89
           QL+WDAQISQV GRRDPYDDLL D  N
Sbjct: 61 CQLRWDAQISQVPGRRDPYDDLLTDINN 88

[Close]

BLAST of Sed0026530 vs. TAIR 10
Match: AT1G67350.1 (unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 151.8 bits (382), Expect = 2.6e-37
Identity = 67/85 (78.82%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 1  MKFIMEFAEDLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSLPLRPYGFWTFERHN 60
          M FIMEFAE+LVLRLME+P+ERDRK REH+Y + +RC+K KEMW+LP+RPYGFWTFERHN
Sbjct: 1  MGFIMEFAENLVLRLMENPEERDRKAREHIYEMHERCKKIKEMWALPIRPYGFWTFERHN 60

Query: 61 SQLQWDAQISQVAGRRDPYDDLLQD 86
          +QL+WD QISQVAGRRDPYDDLL+D
Sbjct: 61 AQLRWDPQISQVAGRRDPYDDLLED 85

[Close]

BLAST of Sed0026530 vs. TAIR 10
Match: AT1G67350.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 151.8 bits (382), Expect = 2.6e-37
Identity = 67/85 (78.82%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 1  MKFIMEFAEDLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSLPLRPYGFWTFERHN 60
          M FIMEFAE+LVLRLME+P+ERDRK REH+Y + +RC+K KEMW+LP+RPYGFWTFERHN
Sbjct: 1  MGFIMEFAENLVLRLMENPEERDRKAREHIYEMHERCKKIKEMWALPIRPYGFWTFERHN 60

Query: 61 SQLQWDAQISQVAGRRDPYDDLLQD 86
          +QL+WD QISQVAGRRDPYDDLL+D
Sbjct: 61 AQLRWDPQISQVAGRRDPYDDLLED 85

The following BLAST results are available for this feature:

BLAST of Sed0026530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008446038.1	2.4e-40	92.05	PREDICTED: uncharacterized protein LOC103488888 [Cucumis melo] >XP_008446039.1 P...	[more]
XP_022151828.1	2.0e-39	88.64	uncharacterized protein LOC111019716 [Momordica charantia]	[more]
XP_011655561.1	2.7e-39	87.50	uncharacterized protein LOC101213251 [Cucumis sativus]	[more]
KAE8648679.1	2.7e-39	87.50	hypothetical protein Csa_008887 [Cucumis sativus]	[more]
XP_038891434.1	2.7e-39	88.64	uncharacterized protein LOC120080854 [Benincasa hispida] >XP_038891435.1 unchara...	[more]

BLAST of Sed0026530 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0026530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BE41	1.2e-40	92.05	uncharacterized protein LOC103488888 OS=Cucumis melo OX=3656 GN=LOC103488888 PE=...	[more]
A0A5A7SSK1	1.2e-40	92.05	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1DD92	9.8e-40	88.64	uncharacterized protein LOC111019716 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A6J1K907	2.9e-39	89.77	uncharacterized protein LOC111493347 OS=Cucurbita maxima OX=3661 GN=LOC111493347...	[more]
A0A6J1GWE2	2.9e-39	89.77	uncharacterized protein LOC111458190 OS=Cucurbita moschata OX=3662 GN=LOC1114581...	[more]

BLAST of Sed0026530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67350.1	2.6e-37	78.82	unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacter...	[more]
AT1G67350.2	2.6e-37	78.82	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photores...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR035204	NADH-ubiquinone oxidoreductase 11kDa subunit	PFAM	PF17250	NDUFB11	coord: 1..85 e-value: 2.2E-52 score: 175.6
IPR035204	NADH-ubiquinone oxidoreductase 11kDa subunit	PANTHER	PTHR37709	EXPRESSED PROTEIN	coord: 1..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0026530.1	Sed0026530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005747	mitochondrial respiratory chain complex I