Sed0026444 (gene) Chayote v1

Overview


Name	Sed0026444
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RING-type E3 ubiquitin transferase
Location	LG10: 3096311 .. 3098770 (-)
RNA-Seq Expression	Sed0026444
Synteny	Sed0026444

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCATCTCCACATCAAGGAGGTTCCTTTTTCAATCCACCGCCGGCGCCACTCAGCCGCCGGCGCCGGCCCGGCCGGGGTTCGGAAGCTTCGACATGAACGTGGTGATGGTCCTATCCGTGCTCCTGTGCGCTCTGGTGTGCTCTCTGGGCCTCAACGCCATCCTGAAATGCGCCTTGCGCTGCACCACTCTGGTTTCCAGCCGCAACCCGAAAGGTGTTCGACGAAATGTGTTGATGAAATTCCCCACTCTCAAATACTCCAAAGAGGCCGTTAAGCTGAAGGGAATCGACGGGGAGTGCGCGATTTGCTTGGCTGAGTTCGAAGCCGGCGATCCTGTTCGCGTTTTGCCCAATTGCTGCCATGGATTCCATGTTCACTGTATCGATAAGTGGCTCAGTTCTCATAGTTCTTGCCCCAAGTGCCGCAACTGCCTCACGGATTCTCACCGGAAGCTCCCCGCCGGTTCTGGGTCGGCGCCGGAGGTCGCTGCGGTGGGTGTTGTTATTGCTCCGGTCGAACGGGAAGGTTTGATGTGGCCTCTGGGGTAGTCCCCCTTTTTTTTGTTGATTGGTGGAGGCTTCTTTTTTTTTTTTTTTTTATTAAAGTATATTTTTATTCATGGATTTTAGGTTTAATTTGTAGGTATTTGTGTTTTAAATTAAAATATTTTATTGTTAATATTTCGATAAGGTTTGATTTTAGTATATTTGCATCTTTTGAGTTTTACTTCAAAAAATAACTAATTTTTTACTAAAGTAACCCACTTTATTAATATAATAATATTTAAAATTTATCTAATTATATATATACATTAATCTGGTTACCTTCTTAGTAAATATTTAGTACTAAAGTTGATGATTATTGAAAGGGGAGGATAAAAGTATTTTTTAAAAAAATATAAAGATTAAAGAGAAATTTCTCTTAGAACTTAAAGATTAAATGTGTGTGCGTGTTTTTTTTTTTTTTTGGATTAGGTGAAAATTCAAAGGCTACTTAATAGAAGATAAGTGTGTTTTTTATTCAATTGTAAATACTTTTTTTTTTCCACTCTCTTTTTCCCTTTTGATAAAAAAAATGTTTGGCACTAACTTAGGAGGTTTAATTTGGTACCCACACTTTTAGATTTATTCTATTTTAGTATTTAATCTTCCAAAAATGTGTGTTTTCAAAAAAAAAAAATCTTCCAAAAATGTGTATTTTTATTCTAGAACATTGTAAAGTTTTTTATTTTTTGTCTTTATGAATAATGAGTGCATAAATATTTTTATAGAGGGAAAGTCTTATATTCTAACTTTTTACGTGCATAATTTTTTAATTTTGAAAATTTTGGAGAAGTTGATTAGAGAGAATTTGTGTTTTTATTCTCACCCTTTATTGATATGTTTTGTTTGCAAAAAAAAAAAAATGTATAAAGGAACTTTTTCGTCGAGCATCTACCTTTAAATGATATACATCGTTTTGTGTTTTTTTAGTACAAAGTGGGAGAAGGGGAACTGACAAACTCTACATAGAGGTACAACTATCGAATTTATGATCGTAGAGTTGAAATAGATTAATACCAAACAAGATAACAATTGTAACGTTGACCCTTGGTTACATCGTTTTGTGTTGAGATAACACTCTAAACATCAATCCAAACCTGACTTAAAAAACAAATTTATTCAATTAAATGATTATTTTTAGTTGGGTTGGCCAATTAAATAGCTCTTTTCACTTAAACCTAAAATAATATCACTTGAAATTATATCTAGCTTTAACATCTAACTTAATGAGAGATTTACATGTATAAAAAAAAAAAAAAAAAAAAAAAAAACTCAACAACGATTGGTGAATAACAAAAATTTGAAAAATAAAACCATTTATAACAGAAAAATAGGTGTGTTCATATTAAATTATCAAAATGTCCATGCTTAAGAACGTGTGAGTTACCAAATGGATCAATCGCTTCATTGTTTATTTGTAAATCAGTTCAATAGCAGGTTCGAGCCCGAGAATCTGTATTTATATTTAAAAAAAAAGGTGTGAGTTAGTGACTTTAAAATTAATTTAGCTCATTGAAAGCAACCACTCAAATTCATAAATCGTATCTTTTACGATTAATTGAAAGAAGAACAATTCATAATACGAAAAATGCACAAAAATTTGTAAGAGATGAAATATTTAAAAAAAAATGTTATAACTAGACTGGTTAAAGTAAAATTTGTATATCTATAACAATTTTCCAACTTTTTATGCAACTAGTAAATTGATAAAAAAAGAAAATTATAGATAATTGTATCTTTTAAAATAATTATTGTTGAACTAAATTAAAAAAAAAGGTGCTTCCTCTAAAAGTATCATTTTAGTGTTTTAAAAAATTTCTTCTTAAAGTTTTGATCTATCACCTAAAAGTGGAAGGCAATAGAGGAATGGAAATGGAAGTTGAGGGTGCAAAGAAAAAACATAAATTGTACTGA

mRNA sequence

ATGTCCATCTCCACATCAAGGAGGTTCCTTTTTCAATCCACCGCCGGCGCCACTCAGCCGCCGGCGCCGGCCCGGCCGGGGTTCGGAAGCTTCGACATGAACGTGGTGATGGTCCTATCCGTGCTCCTGTGCGCTCTGGTGTGCTCTCTGGGCCTCAACGCCATCCTGAAATGCGCCTTGCGCTGCACCACTCTGGTTTCCAGCCGCAACCCGAAAGGTGTTCGACGAAATGTGTTGATGAAATTCCCCACTCTCAAATACTCCAAAGAGGCCGTTAAGCTGAAGGGAATCGACGGGGAGTGCGCGATTTGCTTGGCTGAGTTCGAAGCCGGCGATCCTGTTCGCGTTTTGCCCAATTGCTGCCATGGATTCCATGTTCACTGTATCGATAAGTGGCTCAGTTCTCATAGTTCTTGCCCCAAGTGCCGCAACTGCCTCACGGATTCTCACCGGAAGCTCCCCGCCGGTTCTGGGTCGGCGCCGGAGGTCGCTGCGGTGGGTGTTGTTATTGCTCCGGTCGAACGGGAAGTTTTGATCTATCACCTAAAAGTGGAAGGCAATAGAGGAATGGAAATGGAAGTTGAGGGTGCAAAGAAAAAACATAAATTGTACTGA

Coding sequence (CDS)

ATGTCCATCTCCACATCAAGGAGGTTCCTTTTTCAATCCACCGCCGGCGCCACTCAGCCGCCGGCGCCGGCCCGGCCGGGGTTCGGAAGCTTCGACATGAACGTGGTGATGGTCCTATCCGTGCTCCTGTGCGCTCTGGTGTGCTCTCTGGGCCTCAACGCCATCCTGAAATGCGCCTTGCGCTGCACCACTCTGGTTTCCAGCCGCAACCCGAAAGGTGTTCGACGAAATGTGTTGATGAAATTCCCCACTCTCAAATACTCCAAAGAGGCCGTTAAGCTGAAGGGAATCGACGGGGAGTGCGCGATTTGCTTGGCTGAGTTCGAAGCCGGCGATCCTGTTCGCGTTTTGCCCAATTGCTGCCATGGATTCCATGTTCACTGTATCGATAAGTGGCTCAGTTCTCATAGTTCTTGCCCCAAGTGCCGCAACTGCCTCACGGATTCTCACCGGAAGCTCCCCGCCGGTTCTGGGTCGGCGCCGGAGGTCGCTGCGGTGGGTGTTGTTATTGCTCCGGTCGAACGGGAAGTTTTGATCTATCACCTAAAAGTGGAAGGCAATAGAGGAATGGAAATGGAAGTTGAGGGTGCAAAGAAAAAACATAAATTGTACTGA

Protein sequence

MSISTSRRFLFQSTAGATQPPAPARPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCALRCTTLVSSRNPKGVRRNVLMKFPTLKYSKEAVKLKGIDGECAICLAEFEAGDPVRVLPNCCHGFHVHCIDKWLSSHSSCPKCRNCLTDSHRKLPAGSGSAPEVAAVGVVIAPVEREVLIYHLKVEGNRGMEMEVEGAKKKHKLY

Homology

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BLAST of Sed0026444 vs. NCBI nr
Match: XP_008441014.1 (PREDICTED: RING-H2 finger protein ATL78 [Cucumis melo] >KAA0025547.1 RING-H2 finger protein ATL78 [Cucumis melo var. makuwa] >TYK25707.1 RING-H2 finger protein ATL78 [Cucumis melo var. makuwa])

HSP 1 Score: 249.6 bits (636), Expect = 2.3e-62
Identity = 136/221 (61.54%), Postives = 152/221 (68.78%), Query Frame = 0


Query: 1   MSISTSRRFLFQSTAGATQPP--APARPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKC 60
           MSIS SRRFL  S   A  PP  A  RPGFGSFDMNVVMVLSVLLCAL+CSLGLNAILKC
Sbjct: 1   MSISNSRRFLLPSPTAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC 60

Query: 61  ALRCTTLVSS-----------RNPKGVRRNVLMKFPTLKYSKEAVKLKGIDGECAICLAE 120
           ALRC+TL+++            +PKGVRRNVL KFPT++YSKE  KL+GIDGEC ICL E
Sbjct: 61  ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE 120

Query: 121 FEAGDPVRVLPNCCHGFHVHCIDKWLSSHSSCPKCRNCLTDSHRKLPAGSGSAPEVAA-- 180
           FEAGD VRVLP C HGFHVHCIDKWLSSH+SCPKCRNCLTD+  K+ AG G    V    
Sbjct: 121 FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQETPVTTAA 180

Query: 181 ------------------VGVVIAPVEREVLIYHLKVEGNR 189
                             V VVIAPVERE +I + +   +R
Sbjct: 181 TAAESSSSVEPPRAEEVEVNVVIAPVEREGMINNYRESMSR 221

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BLAST of Sed0026444 vs. NCBI nr
Match: XP_038882744.1 (RING-H2 finger protein ATL78 [Benincasa hispida])

HSP 1 Score: 249.2 bits (635), Expect = 3.0e-62
Identity = 135/211 (63.98%), Postives = 148/211 (70.14%), Query Frame = 0


Query: 1   MSISTSRRFLFQSTAGATQPP--APARPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKC 60
           MSIS SRR L  S   A  PP  A  RPGFGSFDMNVVMVLSVLLCAL+CSLGLNAILKC
Sbjct: 1   MSISNSRRLLLPSATAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC 60

Query: 61  ALRCTTLVSS-----------RNPKGVRRNVLMKFPTLKYSKEAVKLKGIDGECAICLAE 120
           ALRC+TL+++            +PKGVRRN+L KFPT++YSKE  KL+GIDGEC ICL E
Sbjct: 61  ALRCSTLLATVSGGRGGGALVVHPKGVRRNILKKFPTVEYSKEGNKLRGIDGECVICLLE 120

Query: 121 FEAGDPVRVLPNCCHGFHVHCIDKWLSSHSSCPKCRNCLTDSHRKLPAGSGS-------- 180
           FEAGD VRVLP C HGFHVHCIDKWLSSH+SCPKCRNCLTD+  K+ AG G         
Sbjct: 121 FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCPKITAGCGQEAPITTAA 180

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BLAST of Sed0026444 vs. NCBI nr
Match: XP_004148642.1 (RING-H2 finger protein ATL78 [Cucumis sativus] >KGN48380.1 hypothetical protein Csa_003943 [Cucumis sativus])

HSP 1 Score: 247.7 bits (631), Expect = 8.8e-62
Identity = 135/218 (61.93%), Postives = 151/218 (69.27%), Query Frame = 0


Query: 1   MSISTSRRFLFQSTAGATQPP--APARPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKC 60
           MSIS SRRFL  S   A  PP  A  RPGFGSFDMNVVMVLSVLLCAL+CSLGLNAILKC
Sbjct: 1   MSISNSRRFLIPSATVAATPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC 60

Query: 61  ALRCTTLVSS-----------RNPKGVRRNVLMKFPTLKYSKEAVKLKGIDGECAICLAE 120
           ALRC+TL+++            +PKGVRRNVL KFPT++YSKE  KL+GIDGEC ICL E
Sbjct: 61  ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE 120

Query: 121 FEAGDPVRVLPNCCHGFHVHCIDKWLSSHSSCPKCRNCLTDSHRKLPAGSGSAPEV---- 180
           FEAGD VRVLP C HGFHVHCIDKWLSSH+SCPKCRNCLTD+  K+ AG      V    
Sbjct: 121 FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKITAGCAQETHVTTAA 180

Query: 181 -------------AAVGVVIAPVEREVLIYHLKVEGNR 189
                          V VVIAPVERE +I + +   +R
Sbjct: 181 ESSSSVEPPRAEEVGVNVVIAPVEREGMINNYRESMSR 218

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BLAST of Sed0026444 vs. NCBI nr
Match: XP_023544734.1 (RING-H2 finger protein ATL78-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 240.7 bits (613), Expect = 1.1e-59
Identity = 130/207 (62.80%), Postives = 146/207 (70.53%), Query Frame = 0


Query: 1   MSISTSRRFLFQSTAGATQPPAPARPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCAL 60
           MSI+ SRR L  +   +    A  RPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCAL
Sbjct: 1   MSITNSRRLLLPAVTASPPVSAQLRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCAL 60

Query: 61  RCTTLVSSR-----------NPKGVRRNVLMKFPTLKYSKEAVKLKGIDGECAICLAEFE 120
           RC++L+++            +PKGVRRNVL KFPT++Y KE  KL+GIDGEC ICL+EFE
Sbjct: 61  RCSSLLATMSGGLGGGILAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSEFE 120

Query: 121 AGDPVRVLPNCCHGFHVHCIDKWLSSHSSCPKCRNCLTDSHRKLPA-GSGSAP------- 180
            GD VRVLP C HGFHVHCIDKWLSSH+SCPKCRNCLTDS  K+ A GS  AP       
Sbjct: 121 GGDRVRVLPKCYHGFHVHCIDKWLSSHNSCPKCRNCLTDSCHKIAAGGSQEAPDGEFIAI 180

[Close]

BLAST of Sed0026444 vs. NCBI nr
Match: XP_023518448.1 (RING-H2 finger protein ATL78-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 240.0 bits (611), Expect = 1.8e-59
Identity = 130/195 (66.67%), Postives = 148/195 (75.90%), Query Frame = 0


Query: 1   MSISTSRRFLFQS---TAGATQPPAP-ARPGFGSFDMNVVMVLSVLLCALVCSLGLNAIL 60
           MSISTSRRFL  S   TA AT    P  RPGFGSFDMNVVMVLSVLLCALVCSLGLNAIL
Sbjct: 1   MSISTSRRFLLPSATATAVATPSSLPQPRPGFGSFDMNVVMVLSVLLCALVCSLGLNAIL 60

Query: 61  KCALRCTTLVSSR----------NPKGVRRNVLMKFPTLKYSKEAVKLKGI--DGECAIC 120
           KCALRC+TL++S           +PKGV RN+L KFPT++YSK++ K +GI  DGEC IC
Sbjct: 61  KCALRCSTLLASASARHGGNLAIHPKGVGRNILKKFPTVEYSKQSNKFRGIAMDGECVIC 120

Query: 121 LAEFEAGDPVRVLPNCCHGFHVHCIDKWLSSHSSCPKCRNCLTDSHRKLPAGSGSAPEVA 180
           LA+FE GD VRVLP C HGFHVHCIDKWLSSH+SCPKCRNCL+D+ RK+ AG GSA E +
Sbjct: 121 LADFEPGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLSDTSRKVDAGCGSAVEGS 180

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BLAST of Sed0026444 vs. ExPASy Swiss-Prot
Match: Q6NQG7 (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 3.7e-39
Identity = 93/189 (49.21%), Postives = 117/189 (61.90%), Query Frame = 0


Query: 4   STSRRFLFQSTAGATQPPAPARPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCALRCT 63
           S SR+ LF +   +  P      G  +FD NVVMVLSVLLCALVCSLGLN+I++CALRC+
Sbjct: 25  SYSRKLLFHTHDQSPTPAPSPYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCS 84

Query: 64  TLVSSR----------NPKGVRRNVLMKFPTLKYSKEAVKLKGIDGECAICLAEFEAGDP 123
            LV S              GV+R  L  F T+ YS E + L G+D ECAICL+EF A + 
Sbjct: 85  NLVPSEAGGDNYPVRLTNTGVKRKALKSFQTVSYSTE-LNLPGLDTECAICLSEFVAEER 144

Query: 124 VRVLPNCCHGFHVHCIDKWLSSHSSCPKCRNCLTDSHRKLPAGS------GSAPEVAAVG 177
           V++LP C HGFHV CIDKWLSSHSSCP CR+CL  +  K+   S       + P   ++ 
Sbjct: 145 VKLLPTCHHGFHVRCIDKWLSSHSSCPTCRHCLIQTCEKIADCSQTSSLNSTQPPQDSII 204

[Close]

BLAST of Sed0026444 vs. ExPASy Swiss-Prot
Match: P0C034 (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.9e-31
Identity = 73/171 (42.69%), Postives = 105/171 (61.40%), Query Frame = 0


Query: 21  PAPARPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCALRCTT----------LVSSR- 80
           P+P      +   NV+M+LS+L+C ++C LGL+ I++CALR +T          L S+R 
Sbjct: 44  PSPLITHENNLSGNVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRG 103

Query: 81  -NPKGVRRNVLMKFPTLKYSKEAVKLKGIDGECAICLAEFEAGDPVRVLPNCCHGFHVHC 140
            + KG+++  L  FP + YS E + L G+D EC ICL++F +G+ +R+LP C HGFHV C
Sbjct: 104 SSNKGIKKKALRMFPVVSYSPE-MNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRC 163

Query: 141 IDKWLSSHSSCPKCRNCLTDSHRKLPAGSGSAPEVAA-----VGVVIAPVE 175
           IDKWL  H +CPKCRNCL ++ +K+      A  V A     V V I P+E
Sbjct: 164 IDKWLQQHLTCPKCRNCLVETCQKILGDFSQADSVTAEPTEIVIVTIVPLE 213

[Close]

BLAST of Sed0026444 vs. ExPASy Swiss-Prot
Match: Q94BY6 (RING-H2 finger protein ATL75 OS=Arabidopsis thaliana OX=3702 GN=ATL75 PE=2 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.1e-30
Identity = 72/173 (41.62%), Postives = 102/173 (58.96%), Query Frame = 0


Query: 21  PAPARPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCALRCTTLVSSRNP--------- 80
           P+P      +   NV+M+LSVL+C ++C LGL+ I++CA R T+      P         
Sbjct: 45  PSPLITHENNLSGNVLMLLSVLICGIICCLGLHYIIRCAFRRTSSFMISEPIAGLSTPCG 104

Query: 81  ---KGVRRNVLMKFPTLKYSKEAVKLKGIDGECAICLAEFEAGDPVRVLPNCCHGFHVHC 140
              KG+ +  L  FP + YS E + L G+  EC ICL++F +G+ +R+LP C HGFHV C
Sbjct: 105 SSNKGINKKALRMFPVVSYSPE-MNLPGLGEECVICLSDFVSGEQIRMLPKCHHGFHVRC 164

Query: 141 IDKWLSSHSSCPKCRNCLTDSHRKLPAGSGSAPEVAA-----VGVVIAPVERE 177
           IDKWL  H +CPKCR+CL ++ +K+      A +VAA     V V IAP+E E
Sbjct: 165 IDKWLQQHLTCPKCRHCLVETCQKILGDFSQADQVAATPTASVIVRIAPLEPE 216

[Close]

BLAST of Sed0026444 vs. ExPASy Swiss-Prot
Match: Q9LS99 (RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.2e-30
Identity = 71/173 (41.04%), Postives = 106/173 (61.27%), Query Frame = 0


Query: 26  PGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCA--------------LRCTTLVSSRNP 85
           P   +   NV+M+LS+LLC ++CSLGL+ I++CA              +  T   SS N 
Sbjct: 43  PDKNNLSGNVLMLLSILLCGIICSLGLHYIIRCAFIRSRSFMISDPISIPSTPRDSSVN- 102

Query: 86  KGVRRNVLMKFPTLKYSKEAVKLKGIDGECAICLAEFEAGDPVRVLPNCCHGFHVHCIDK 145
           KG+++  L   P + YS E + L G+  EC ICL++F AG+ +RVLP C HGFH+ CIDK
Sbjct: 103 KGIKKKALKMLPVVNYSPE-INLPGVGEECVICLSDFVAGEQLRVLPKCNHGFHLRCIDK 162

Query: 146 WLSSHSSCPKCRNCLTDSHRKLPAGSGSAPEVAA-----VGVVIAPVEREVLI 180
           WL+ H +CPKCR+CL D+ +K+ +   +A +VAA     + + I+P+E E  +
Sbjct: 163 WLTQHMTCPKCRHCLVDTCQKVLSDCDAADQVAATATESIDIRISPLEPEARV 213

[Close]

BLAST of Sed0026444 vs. ExPASy Swiss-Prot
Match: Q6NML0 (E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana OX=3702 GN=ATL76 PE=1 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 6.0e-29
Identity = 70/173 (40.46%), Postives = 107/173 (61.85%), Query Frame = 0


Query: 21  PAPARPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCALRCTT--LVS----------S 80
           P+P      +   NV+M+LSVL+C ++C LGL+ I++CA R ++  ++S          S
Sbjct: 44  PSPLITHENNLKGNVLMLLSVLICGIICCLGLHYIIRCAFRRSSRFMISEPISSLSTPRS 103

Query: 81  RNPKGVRRNVLMKFPTLKYSKEAVKLKGIDGECAICLAEFEAGDPVRVLPNCCHGFHVHC 140
            + KG+++  L  FP + YS+E + L GI  EC ICL++F +G+ +R+LP C HGFHV C
Sbjct: 104 SSNKGIKKKALRMFPVVSYSRE-MNLPGIGEECVICLSDFVSGEQLRLLPKCNHGFHVRC 163

Query: 141 IDKWLSSHSSCPKCRNCLTDSHRKL-----PAGSGSAPEVAAVGVVIAPVERE 177
           IDKWL  H +CPKCR+CL ++ +K+      A S ++    +V V I P+E E
Sbjct: 164 IDKWLQHHLTCPKCRHCLVETCQKILGDFSQADSMASTPTESVIVRIDPLEPE 215

[Close]

BLAST of Sed0026444 vs. ExPASy TrEMBL
Match: A0A5A7SLG8 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1230G00380 PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 1.1e-62
Identity = 136/221 (61.54%), Postives = 152/221 (68.78%), Query Frame = 0


Query: 1   MSISTSRRFLFQSTAGATQPP--APARPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKC 60
           MSIS SRRFL  S   A  PP  A  RPGFGSFDMNVVMVLSVLLCAL+CSLGLNAILKC
Sbjct: 1   MSISNSRRFLLPSPTAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC 60

Query: 61  ALRCTTLVSS-----------RNPKGVRRNVLMKFPTLKYSKEAVKLKGIDGECAICLAE 120
           ALRC+TL+++            +PKGVRRNVL KFPT++YSKE  KL+GIDGEC ICL E
Sbjct: 61  ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE 120

Query: 121 FEAGDPVRVLPNCCHGFHVHCIDKWLSSHSSCPKCRNCLTDSHRKLPAGSGSAPEVAA-- 180
           FEAGD VRVLP C HGFHVHCIDKWLSSH+SCPKCRNCLTD+  K+ AG G    V    
Sbjct: 121 FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQETPVTTAA 180

Query: 181 ------------------VGVVIAPVEREVLIYHLKVEGNR 189
                             V VVIAPVERE +I + +   +R
Sbjct: 181 TAAESSSSVEPPRAEEVEVNVVIAPVEREGMINNYRESMSR 221

[Close]

BLAST of Sed0026444 vs. ExPASy TrEMBL
Match: A0A1S3B203 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103485255 PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 1.1e-62
Identity = 136/221 (61.54%), Postives = 152/221 (68.78%), Query Frame = 0


Query: 1   MSISTSRRFLFQSTAGATQPP--APARPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKC 60
           MSIS SRRFL  S   A  PP  A  RPGFGSFDMNVVMVLSVLLCAL+CSLGLNAILKC
Sbjct: 1   MSISNSRRFLLPSPTAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC 60

Query: 61  ALRCTTLVSS-----------RNPKGVRRNVLMKFPTLKYSKEAVKLKGIDGECAICLAE 120
           ALRC+TL+++            +PKGVRRNVL KFPT++YSKE  KL+GIDGEC ICL E
Sbjct: 61  ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE 120

Query: 121 FEAGDPVRVLPNCCHGFHVHCIDKWLSSHSSCPKCRNCLTDSHRKLPAGSGSAPEVAA-- 180
           FEAGD VRVLP C HGFHVHCIDKWLSSH+SCPKCRNCLTD+  K+ AG G    V    
Sbjct: 121 FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQETPVTTAA 180

Query: 181 ------------------VGVVIAPVEREVLIYHLKVEGNR 189
                             V VVIAPVERE +I + +   +R
Sbjct: 181 TAAESSSSVEPPRAEEVEVNVVIAPVEREGMINNYRESMSR 221

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BLAST of Sed0026444 vs. ExPASy TrEMBL
Match: A0A0A0KF92 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_6G484580 PE=3 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 4.3e-62
Identity = 135/218 (61.93%), Postives = 151/218 (69.27%), Query Frame = 0


Query: 1   MSISTSRRFLFQSTAGATQPP--APARPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKC 60
           MSIS SRRFL  S   A  PP  A  RPGFGSFDMNVVMVLSVLLCAL+CSLGLNAILKC
Sbjct: 1   MSISNSRRFLIPSATVAATPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC 60

Query: 61  ALRCTTLVSS-----------RNPKGVRRNVLMKFPTLKYSKEAVKLKGIDGECAICLAE 120
           ALRC+TL+++            +PKGVRRNVL KFPT++YSKE  KL+GIDGEC ICL E
Sbjct: 61  ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE 120

Query: 121 FEAGDPVRVLPNCCHGFHVHCIDKWLSSHSSCPKCRNCLTDSHRKLPAGSGSAPEV---- 180
           FEAGD VRVLP C HGFHVHCIDKWLSSH+SCPKCRNCLTD+  K+ AG      V    
Sbjct: 121 FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKITAGCAQETHVTTAA 180

Query: 181 -------------AAVGVVIAPVEREVLIYHLKVEGNR 189
                          V VVIAPVERE +I + +   +R
Sbjct: 181 ESSSSVEPPRAEEVGVNVVIAPVEREGMINNYRESMSR 218

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BLAST of Sed0026444 vs. ExPASy TrEMBL
Match: A0A6J1GCL7 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111452965 PE=3 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 7.5e-59
Identity = 127/207 (61.35%), Postives = 145/207 (70.05%), Query Frame = 0


Query: 1   MSISTSRRFLFQSTAGATQPPAPARPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCAL 60
           MSI+ SRR L  +   +    A  RPGFGSFDMNVVMVLSVLLCALVCSLGLNA+LKCAL
Sbjct: 1   MSITNSRRLLLPAVTASPPVSAQPRPGFGSFDMNVVMVLSVLLCALVCSLGLNALLKCAL 60

Query: 61  RCTTLVSSR-----------NPKGVRRNVLMKFPTLKYSKEAVKLKGIDGECAICLAEFE 120
           RC++L+++            +PKGVRRNVL KFPT++Y KE  KL+GIDGEC ICL+EFE
Sbjct: 61  RCSSLLATMSGGRGGGIFAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSEFE 120

Query: 121 AGDPVRVLPNCCHGFHVHCIDKWLSSHSSCPKCRNCLTDS-HRKLPAGSGSAP------- 180
            GD VRVLP C HGFHVHCIDKWLSSH+SCPKCRNCLTD+ H+    GS  AP       
Sbjct: 121 GGDRVRVLPICFHGFHVHCIDKWLSSHNSCPKCRNCLTDTCHKIASGGSQEAPDGEFIAI 180

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BLAST of Sed0026444 vs. ExPASy TrEMBL
Match: A0A6J1IR86 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111478013 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.7e-58
Identity = 125/208 (60.10%), Postives = 141/208 (67.79%), Query Frame = 0


Query: 1   MSISTSRRFLFQSTAGATQPPAPARPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCAL 60
           MSI+ SRR L  +   +       RPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCAL
Sbjct: 1   MSITNSRRLLLPAVTASPPVSVQLRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCAL 60

Query: 61  RCTTLVSSR-----------NPKGVRRNVLMKFPTLKYSKEAVKLKGIDGECAICLAEFE 120
           RC++L+++            +PKGVRRNVL KFPT++Y KE  KL+GIDGEC ICL+EFE
Sbjct: 61  RCSSLLATMSEGRGGGILAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSEFE 120

Query: 121 AGDPVRVLPNCCHGFHVHCIDKWLSSHSSCPKCRNCLTDSHRKLPAGSGSAP-------- 180
            GD VRVLP C HGFHVHCIDKWLSSH+SCPKCRNCL   H+    GS  AP        
Sbjct: 121 GGDRVRVLPKCFHGFHVHCIDKWLSSHNSCPKCRNCLNTCHKIAAGGSQEAPVTASSSPV 180

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BLAST of Sed0026444 vs. TAIR 10
Match: AT1G49230.1 (RING/U-box superfamily protein )

HSP 1 Score: 162.9 bits (411), Expect = 2.7e-40
Identity = 93/189 (49.21%), Postives = 117/189 (61.90%), Query Frame = 0


Query: 4   STSRRFLFQSTAGATQPPAPARPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCALRCT 63
           S SR+ LF +   +  P      G  +FD NVVMVLSVLLCALVCSLGLN+I++CALRC+
Sbjct: 25  SYSRKLLFHTHDQSPTPAPSPYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCS 84

Query: 64  TLVSSR----------NPKGVRRNVLMKFPTLKYSKEAVKLKGIDGECAICLAEFEAGDP 123
            LV S              GV+R  L  F T+ YS E + L G+D ECAICL+EF A + 
Sbjct: 85  NLVPSEAGGDNYPVRLTNTGVKRKALKSFQTVSYSTE-LNLPGLDTECAICLSEFVAEER 144

Query: 124 VRVLPNCCHGFHVHCIDKWLSSHSSCPKCRNCLTDSHRKLPAGS------GSAPEVAAVG 177
           V++LP C HGFHV CIDKWLSSHSSCP CR+CL  +  K+   S       + P   ++ 
Sbjct: 145 VKLLPTCHHGFHVRCIDKWLSSHSSCPTCRHCLIQTCEKIADCSQTSSLNSTQPPQDSII 204

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BLAST of Sed0026444 vs. TAIR 10
Match: AT1G49220.1 (RING/U-box superfamily protein )

HSP 1 Score: 136.7 bits (343), Expect = 2.0e-32
Identity = 73/171 (42.69%), Postives = 105/171 (61.40%), Query Frame = 0


Query: 21  PAPARPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCALRCTT----------LVSSR- 80
           P+P      +   NV+M+LS+L+C ++C LGL+ I++CALR +T          L S+R 
Sbjct: 44  PSPLITHENNLSGNVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRG 103

Query: 81  -NPKGVRRNVLMKFPTLKYSKEAVKLKGIDGECAICLAEFEAGDPVRVLPNCCHGFHVHC 140
            + KG+++  L  FP + YS E + L G+D EC ICL++F +G+ +R+LP C HGFHV C
Sbjct: 104 SSNKGIKKKALRMFPVVSYSPE-MNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRC 163

Query: 141 IDKWLSSHSSCPKCRNCLTDSHRKLPAGSGSAPEVAA-----VGVVIAPVE 175
           IDKWL  H +CPKCRNCL ++ +K+      A  V A     V V I P+E
Sbjct: 164 IDKWLQQHLTCPKCRNCLVETCQKILGDFSQADSVTAEPTEIVIVTIVPLE 213

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BLAST of Sed0026444 vs. TAIR 10
Match: AT1G49200.1 (RING/U-box superfamily protein )

HSP 1 Score: 134.8 bits (338), Expect = 7.8e-32
Identity = 72/173 (41.62%), Postives = 102/173 (58.96%), Query Frame = 0


Query: 21  PAPARPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCALRCTTLVSSRNP--------- 80
           P+P      +   NV+M+LSVL+C ++C LGL+ I++CA R T+      P         
Sbjct: 45  PSPLITHENNLSGNVLMLLSVLICGIICCLGLHYIIRCAFRRTSSFMISEPIAGLSTPCG 104

Query: 81  ---KGVRRNVLMKFPTLKYSKEAVKLKGIDGECAICLAEFEAGDPVRVLPNCCHGFHVHC 140
              KG+ +  L  FP + YS E + L G+  EC ICL++F +G+ +R+LP C HGFHV C
Sbjct: 105 SSNKGINKKALRMFPVVSYSPE-MNLPGLGEECVICLSDFVSGEQIRMLPKCHHGFHVRC 164

Query: 141 IDKWLSSHSSCPKCRNCLTDSHRKLPAGSGSAPEVAA-----VGVVIAPVERE 177
           IDKWL  H +CPKCR+CL ++ +K+      A +VAA     V V IAP+E E
Sbjct: 165 IDKWLQQHLTCPKCRHCLVETCQKILGDFSQADQVAATPTASVIVRIAPLEPE 216

[Close]

BLAST of Sed0026444 vs. TAIR 10
Match: AT3G18773.1 (RING/U-box superfamily protein )

HSP 1 Score: 133.3 bits (334), Expect = 2.3e-31
Identity = 71/173 (41.04%), Postives = 106/173 (61.27%), Query Frame = 0


Query: 26  PGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCA--------------LRCTTLVSSRNP 85
           P   +   NV+M+LS+LLC ++CSLGL+ I++CA              +  T   SS N 
Sbjct: 43  PDKNNLSGNVLMLLSILLCGIICSLGLHYIIRCAFIRSRSFMISDPISIPSTPRDSSVN- 102

Query: 86  KGVRRNVLMKFPTLKYSKEAVKLKGIDGECAICLAEFEAGDPVRVLPNCCHGFHVHCIDK 145
           KG+++  L   P + YS E + L G+  EC ICL++F AG+ +RVLP C HGFH+ CIDK
Sbjct: 103 KGIKKKALKMLPVVNYSPE-INLPGVGEECVICLSDFVAGEQLRVLPKCNHGFHLRCIDK 162

Query: 146 WLSSHSSCPKCRNCLTDSHRKLPAGSGSAPEVAA-----VGVVIAPVEREVLI 180
           WL+ H +CPKCR+CL D+ +K+ +   +A +VAA     + + I+P+E E  +
Sbjct: 163 WLTQHMTCPKCRHCLVDTCQKVLSDCDAADQVAATATESIDIRISPLEPEARV 213

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BLAST of Sed0026444 vs. TAIR 10
Match: AT1G49210.1 (RING/U-box superfamily protein )

HSP 1 Score: 129.0 bits (323), Expect = 4.3e-30
Identity = 70/173 (40.46%), Postives = 107/173 (61.85%), Query Frame = 0


Query: 21  PAPARPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCALRCTT--LVS----------S 80
           P+P      +   NV+M+LSVL+C ++C LGL+ I++CA R ++  ++S          S
Sbjct: 44  PSPLITHENNLKGNVLMLLSVLICGIICCLGLHYIIRCAFRRSSRFMISEPISSLSTPRS 103

Query: 81  RNPKGVRRNVLMKFPTLKYSKEAVKLKGIDGECAICLAEFEAGDPVRVLPNCCHGFHVHC 140
            + KG+++  L  FP + YS+E + L GI  EC ICL++F +G+ +R+LP C HGFHV C
Sbjct: 104 SSNKGIKKKALRMFPVVSYSRE-MNLPGIGEECVICLSDFVSGEQLRLLPKCNHGFHVRC 163

Query: 141 IDKWLSSHSSCPKCRNCLTDSHRKL-----PAGSGSAPEVAAVGVVIAPVERE 177
           IDKWL  H +CPKCR+CL ++ +K+      A S ++    +V V I P+E E
Sbjct: 164 IDKWLQHHLTCPKCRHCLVETCQKILGDFSQADSMASTPTESVIVRIDPLEPE 215

The following BLAST results are available for this feature:

BLAST of Sed0026444 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441014.1	2.3e-62	61.54	PREDICTED: RING-H2 finger protein ATL78 [Cucumis melo] >KAA0025547.1 RING-H2 fin...	[more]
XP_038882744.1	3.0e-62	63.98	RING-H2 finger protein ATL78 [Benincasa hispida]	[more]
XP_004148642.1	8.8e-62	61.93	RING-H2 finger protein ATL78 [Cucumis sativus] >KGN48380.1 hypothetical protein ...	[more]
XP_023544734.1	1.1e-59	62.80	RING-H2 finger protein ATL78-like [Cucurbita pepo subsp. pepo]	[more]
XP_023518448.1	1.8e-59	66.67	RING-H2 finger protein ATL78-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0026444 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NQG7	3.7e-39	49.21	RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1	[more]
P0C034	2.9e-31	42.69	RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1	[more]
Q94BY6	1.1e-30	41.62	RING-H2 finger protein ATL75 OS=Arabidopsis thaliana OX=3702 GN=ATL75 PE=2 SV=1	[more]
Q9LS99	3.2e-30	41.04	RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1	[more]
Q6NML0	6.0e-29	40.46	E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana OX=3702 GN=ATL76 PE=1 ...	[more]

BLAST of Sed0026444 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SLG8	1.1e-62	61.54	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3B203	1.1e-62	61.54	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103485255 PE=3 ...	[more]
A0A0A0KF92	4.3e-62	61.93	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_6G484580 PE...	[more]
A0A6J1GCL7	7.5e-59	61.35	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111452965...	[more]
A0A6J1IR86	1.7e-58	60.10	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111478013 P...	[more]

BLAST of Sed0026444 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49230.1	2.7e-40	49.21	RING/U-box superfamily protein	[more]
AT1G49220.1	2.0e-32	42.69	RING/U-box superfamily protein	[more]
AT1G49200.1	7.8e-32	41.62	RING/U-box superfamily protein	[more]
AT3G18773.1	2.3e-31	41.04	RING/U-box superfamily protein	[more]
AT1G49210.1	4.3e-30	40.46	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 101..142 e-value: 6.0E-6 score: 35.8
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 100..143 e-value: 5.9E-14 score: 52.1
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 101..143 score: 12.120453
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 61..148 e-value: 2.7E-20 score: 73.8
IPR044602	RING-H2 finger protein ATL10/ATL75-79	PANTHER	PTHR46905	RING-H2 FINGER PROTEIN ATL78	coord: 5..182
None	No IPR available	PANTHER	PTHR46905:SF7	RING-H2 FINGER PROTEIN ATL78	coord: 5..182
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 100..143 e-value: 1.09579E-16 score: 68.8677
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 100..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0026444.1	Sed0026444.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016020	membrane
molecular_function	GO:0016740	transferase activity