Sed0026425 (gene) Chayote v1

Overview


Name	Sed0026425
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG11: 32131969 .. 32133637 (+)
RNA-Seq Expression	Sed0026425
Synteny	Sed0026425

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAATCGATGGCGGCGTACGGCGGCGGCGATTCGGCGGCCGCGGTTCCGATTCACAGTCAGGTAGTGAAGATCAAGAAGGAGATTGAGAAGACAAAGCATCCATCGCTTCAGCAATCCGACATGTCGACTCATCTCCTCCTTCGCGACATGTCGATTTCCAAGCCGCGCCCTCGCTCCCCGCTCGGGCTCGTTGTTGTGGCCGATACGCCGATTTTTGTCGGGAATTGAATCGGCCGAGTTTCGGATTATTTCTTCTTCGAATGTGATTTAGAAGTAAATAATTTTGGTGTACAATTTTCCAACACTAATGGATATGACGGAATTGTTTTTTTTTTTTTTTTTTTTGAGAATTGTTTCTTTTCGTTTCTTCTCTGCAATTTTCTCATCTTGAAACGAATCATCTGTTTTTATTATTATTATTTTTTTTTAAAAGAACTATCCTAGACAAATATCAATTTTATGATCGAAATTGAATTACATCCCATTAAATAAGGTATCTATGAGTTAATAATATGTGACAATAGTTTGCATTAAAAAAATAATAATAATAGGACAATATTAATTTTAATCACTAAATTTTGAATTTTCATTTTATTTTGATTTTTAATATAATGAAAATTGGTTGAATAATGTTGTAAGCACATTTCTTAAAAACACAAGTAATTTTAAGTTTTTTTTTCTTTTTGAAGTTACGAAATAAATCTCAAATTTTAAAAATTAAATTTAAAATAAAAATAAAATAGAACAAAATTAGATTAAAAAAAATTAAAGTAGACAAATACCAAAATTTGAGGATCATAAATGTTATTTGTTACGAATCTCAAGATCAACCGTTTTTAAAAGTAACAATTGGTTCAGTACTAAAAAAAAAAAAGTAACAATTGGTTCATTTTTATTTTTGACGTTTCATGGACTTAAAAAATAGTATGTTTATCCCAAGAAAAAATAAATCCTTTTAATTGGAAGGTTTATGGAATAAAATTGAAGATAGGTTGAGAATTTAGATGAAAGATTTATTAGTTTTTTTCGAAAATATATACCCAAATTTTTATTAATTCTTCTTTTTTATTTTTAATAATTTATTTGTAATGATTCATTTATAACTATTCAATCATTTTTAATCATTCGTTTAAAATCAATAAAAATAACATTTTTTAATTCTTTTTAAATACTCAAAATAACAATTCGTTTTAAATCTACATCATTTGATTGGAACTCCTCCAAACAAAAATTATATCCACGTTAAATCTTCATTTGATAAACAAACACCCCCTAACGCATAAAAAAGTCAATTTCAACTTCCTCCCATATCAAATATGGGTATGTGTAGTAATAAATTGGTGTGGTTTCGGTATAATTAGTATACTATTAAATTTTACATTTATTTTATGCCTACTATCTAAAAATTTCAAGAGATAATTGATTAAAATTTTATATGATTTTTTAAAAGTAAATTTTATATGGTGTGGTTTGCCATTTATATATTTATTCACTTTTAAGCCTTTCCTTTATTTATTATTATTATTTAACATACTTTTAGGGGTATTTGTTTACCATATTTAAGGAGGATTTAGCTTAAGAAATTATATTGAAAAGTTATTTTGAATAGTTAAAAATTAAGAGTTGTACTAAAAAATTGGTTTGGATGCACTTTTTGTGTTGA

mRNA sequence

ATGGAGAAATCGATGGCGGCGTACGGCGGCGGCGATTCGGCGGCCGCGGTTCCGATTCACAGTCAGGTAGTGAAGATCAAGAAGGAGATTGAGAAGACAAAGCATCCATCGCTTCAGCAATCCGACATGTCGACTCATCTCCTCCTTCGCGACATGTCGATTTCCAAGCCGCGCCCTCGCTCCCCGCTCGGGCTCGTTGTTGTGGCCGATACGCCGATTTTTAGTTGTACTAAAAAATTGGTTTGGATGCACTTTTTGTGTTGA

Coding sequence (CDS)

ATGGAGAAATCGATGGCGGCGTACGGCGGCGGCGATTCGGCGGCCGCGGTTCCGATTCACAGTCAGGTAGTGAAGATCAAGAAGGAGATTGAGAAGACAAAGCATCCATCGCTTCAGCAATCCGACATGTCGACTCATCTCCTCCTTCGCGACATGTCGATTTCCAAGCCGCGCCCTCGCTCCCCGCTCGGGCTCGTTGTTGTGGCCGATACGCCGATTTTTAGTTGTACTAAAAAATTGGTTTGGATGCACTTTTTGTGTTGA

Protein sequence

MEKSMAAYGGGDSAAAVPIHSQVVKIKKEIEKTKHPSLQQSDMSTHLLLRDMSISKPRPRSPLGLVVVADTPIFSCTKKLVWMHFLC

Homology

[Close]

BLAST of Sed0026425 vs. NCBI nr
Match: XP_023523054.1 (uncharacterized protein LOC111787191 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 93.2 bits (230), Expect = 1.2e-15
Identity = 50/65 (76.92%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 1  MEKSMAAYGGGDSAAAVPIHSQVVKIKKEIEKTKHPSLQQSDMSTHLLLRDMSISKPRPR 60
          ME   A   GG  + A P+H QVVKIKKEIEK KHPSLQQS+MSTHLLLRDMSISKPRPR
Sbjct: 1  MENPTAVADGGLDSQA-PVHIQVVKIKKEIEKIKHPSLQQSEMSTHLLLRDMSISKPRPR 60

Query: 61 SPLGL 66
          SPLGL
Sbjct: 61 SPLGL 64

[Close]

BLAST of Sed0026425 vs. NCBI nr
Match: XP_016903705.1 (PREDICTED: uncharacterized protein LOC103504534 [Cucumis melo] >KAA0046371.1 uncharacterized protein E6C27_scaffold149G00850 [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 1.5e-15
Identity = 51/73 (69.86%), Postives = 56/73 (76.71%), Query Frame = 0


Query: 1  MEKSMAAYGGGDSAAAVPIHSQVVKIKKEIEKTKHPSLQQSDMSTHLLLRDMSISKPRPR 60
          M+ S AA       + VPIHSQV KIKKEIEK KHPSLQQSDM+THLLLR +SISKPR R
Sbjct: 1  MDYSTAALDSDSEVSQVPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSR 60

Query: 61 SPLGLVVVADTPI 74
          SPLGL   +DTPI
Sbjct: 61 SPLGL--PSDTPI 71

[Close]

BLAST of Sed0026425 vs. NCBI nr
Match: XP_023511992.1 (uncharacterized protein LOC111776834 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 92.0 bits (227), Expect = 2.6e-15
Identity = 49/65 (75.38%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 1  MEKSMAAYGGGDSAAAVPIHSQVVKIKKEIEKTKHPSLQQSDMSTHLLLRDMSISKPRPR 60
          ME   A   GG  + A P+H QVVKIK+EIEK KHPSLQQS+MSTHLLLRDMSISKPRPR
Sbjct: 1  MENPTAVADGGLDSQA-PVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPRPR 60

Query: 61 SPLGL 66
          SPLGL
Sbjct: 61 SPLGL 64

[Close]

BLAST of Sed0026425 vs. NCBI nr
Match: XP_022921904.1 (uncharacterized protein LOC111430025 isoform X1 [Cucurbita moschata] >KAG7032562.1 hypothetical protein SDJN02_06611, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 91.7 bits (226), Expect = 3.4e-15
Identity = 49/65 (75.38%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 1  MEKSMAAYGGGDSAAAVPIHSQVVKIKKEIEKTKHPSLQQSDMSTHLLLRDMSISKPRPR 60
          ME S A    G  + A P+H QVVKIK+EIEK KHPSLQQS+MSTHLLLRDMSISKPRPR
Sbjct: 1  MENSTAVADAGLDSQA-PVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPRPR 60

Query: 61 SPLGL 66
          SPLGL
Sbjct: 61 SPLGL 64

[Close]

BLAST of Sed0026425 vs. NCBI nr
Match: XP_022921910.1 (uncharacterized protein LOC111430025 isoform X2 [Cucurbita moschata])

HSP 1 Score: 89.0 bits (219), Expect = 2.2e-14
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 18 PIHSQVVKIKKEIEKTKHPSLQQSDMSTHLLLRDMSISKPRPRSPLGL 66
          P+H QVVKIK+EIEK KHPSLQQS+MSTHLLLRDMSISKPRPRSPLGL
Sbjct: 6  PVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPRPRSPLGL 53

[Close]

BLAST of Sed0026425 vs. ExPASy TrEMBL
Match: A0A5A7TYE7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G00850 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 7.5e-16
Identity = 51/73 (69.86%), Postives = 56/73 (76.71%), Query Frame = 0


Query: 1  MEKSMAAYGGGDSAAAVPIHSQVVKIKKEIEKTKHPSLQQSDMSTHLLLRDMSISKPRPR 60
          M+ S AA       + VPIHSQV KIKKEIEK KHPSLQQSDM+THLLLR +SISKPR R
Sbjct: 1  MDYSTAALDSDSEVSQVPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSR 60

Query: 61 SPLGLVVVADTPI 74
          SPLGL   +DTPI
Sbjct: 61 SPLGL--PSDTPI 71

[Close]

BLAST of Sed0026425 vs. ExPASy TrEMBL
Match: A0A1S4E6T1 (uncharacterized protein LOC103504534 OS=Cucumis melo OX=3656 GN=LOC103504534 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 7.5e-16
Identity = 51/73 (69.86%), Postives = 56/73 (76.71%), Query Frame = 0


Query: 1  MEKSMAAYGGGDSAAAVPIHSQVVKIKKEIEKTKHPSLQQSDMSTHLLLRDMSISKPRPR 60
          M+ S AA       + VPIHSQV KIKKEIEK KHPSLQQSDM+THLLLR +SISKPR R
Sbjct: 1  MDYSTAALDSDSEVSQVPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSR 60

Query: 61 SPLGLVVVADTPI 74
          SPLGL   +DTPI
Sbjct: 61 SPLGL--PSDTPI 71

[Close]

BLAST of Sed0026425 vs. ExPASy TrEMBL
Match: A0A6J1E1V2 (uncharacterized protein LOC111430025 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430025 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.7e-15
Identity = 49/65 (75.38%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 1  MEKSMAAYGGGDSAAAVPIHSQVVKIKKEIEKTKHPSLQQSDMSTHLLLRDMSISKPRPR 60
          ME S A    G  + A P+H QVVKIK+EIEK KHPSLQQS+MSTHLLLRDMSISKPRPR
Sbjct: 1  MENSTAVADAGLDSQA-PVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPRPR 60

Query: 61 SPLGL 66
          SPLGL
Sbjct: 61 SPLGL 64

[Close]

BLAST of Sed0026425 vs. ExPASy TrEMBL
Match: A0A6J1CYH4 (uncharacterized protein LOC111015628 OS=Momordica charantia OX=3673 GN=LOC111015628 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.1e-14
Identity = 50/73 (68.49%), Postives = 57/73 (78.08%), Query Frame = 0


Query: 1  MEKSMAAYGGGDSAAAVPIHSQVVKIKKEIEKTKHPSLQQSDMSTHLLLRDMSISKPRPR 60
          MEK+    G GDS A VP+H QVVKIK+EIEK KHPSLQQS+M+THLLLR +SISK R R
Sbjct: 1  MEKTA---GDGDSDAQVPVHIQVVKIKREIEKIKHPSLQQSEMTTHLLLRGISISKSRSR 60

Query: 61 SPLGLVVVADTPI 74
          SPLGL   A+ PI
Sbjct: 61 SPLGL--AAERPI 68

[Close]

BLAST of Sed0026425 vs. ExPASy TrEMBL
Match: A0A6J1E741 (uncharacterized protein LOC111430025 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430025 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.1e-14
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 18 PIHSQVVKIKKEIEKTKHPSLQQSDMSTHLLLRDMSISKPRPRSPLGL 66
          P+H QVVKIK+EIEK KHPSLQQS+MSTHLLLRDMSISKPRPRSPLGL
Sbjct: 6  PVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPRPRSPLGL 53

[Close]

BLAST of Sed0026425 vs. TAIR 10
Match: AT1G24600.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67920.1); Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.1 bits (118), Expect = 1.1e-06
Identity = 35/66 (53.03%), Postives = 44/66 (66.67%), Query Frame = 0


Query: 1  MEKSMAAYGGGDSAAAVP-IHSQVVKIKKEIEKTKHPSLQQSDMSTHLLLRDMSISKPRP 60
          MEK   A  G D   +VP IHSQVVKIK+E EK +HPSL+Q +M   L+ R++ +   R 
Sbjct: 1  MEKK--ANHGDDVQESVPIIHSQVVKIKREFEKIQHPSLKQPEMP--LVFREI-MGPRRS 60

Query: 61 RSPLGL 66
          RSPLGL
Sbjct: 61 RSPLGL 61

[Close]

BLAST of Sed0026425 vs. TAIR 10
Match: AT1G67920.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24600.1); Has 22 Blast hits to 22 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.7 bits (99), Expect = 1.7e-04
Identity = 26/47 (55.32%), Postives = 32/47 (68.09%), Query Frame = 0


Query: 19 IHSQVVKIKKEIEKTKHPSLQQSDMSTHLLLRDMSISKPRPRSPLGL 66
          IHSQV KIKKE EK + PSLQQ +M    +L ++   + R RSPLGL
Sbjct: 15 IHSQVEKIKKEFEKIRQPSLQQPEM--RRVLSEIK-RRQRSRSPLGL 58

The following BLAST results are available for this feature:

BLAST of Sed0026425 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023523054.1	1.2e-15	76.92	uncharacterized protein LOC111787191 [Cucurbita pepo subsp. pepo]	[more]
XP_016903705.1	1.5e-15	69.86	PREDICTED: uncharacterized protein LOC103504534 [Cucumis melo] >KAA0046371.1 unc...	[more]
XP_023511992.1	2.6e-15	75.38	uncharacterized protein LOC111776834 [Cucurbita pepo subsp. pepo]	[more]
XP_022921904.1	3.4e-15	75.38	uncharacterized protein LOC111430025 isoform X1 [Cucurbita moschata] >KAG7032562...	[more]
XP_022921910.1	2.2e-14	89.58	uncharacterized protein LOC111430025 isoform X2 [Cucurbita moschata]	[more]

BLAST of Sed0026425 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0026425 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TYE7	7.5e-16	69.86	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S4E6T1	7.5e-16	69.86	uncharacterized protein LOC103504534 OS=Cucumis melo OX=3656 GN=LOC103504534 PE=...	[more]
A0A6J1E1V2	1.7e-15	75.38	uncharacterized protein LOC111430025 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1CYH4	1.1e-14	68.49	uncharacterized protein LOC111015628 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A6J1E741	1.1e-14	89.58	uncharacterized protein LOC111430025 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Sed0026425 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G24600.1	1.1e-06	53.03	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G67920.1	1.7e-04	55.32	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34780:SF2	BNAA07G38580D PROTEIN	coord: 10..73
None	No IPR available	PANTHER	PTHR34780	OS08G0427800 PROTEIN	coord: 10..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0026425.1	Sed0026425.1	mRNA