Sed0026413 (gene) Chayote v1

Overview


Name	Sed0026413
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Cytochrome c oxidase assembly protein cox16
Location	LG06: 44422161 .. 44425696 (-)
RNA-Seq Expression	Sed0026413
Synteny	Sed0026413

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGATGATTCGAGACATCGGCTTGTTTTTTCAGTTTCATTCACTTTCTTATTGTTCGTCAACACCATCAGCTTGGCGTAGATTGGTAAATTTATTTTCTCTCATCATTTATTGCTTATTTTTTTAATTTTATTTTTAGGGTCATAATCTTGCATTCTCGAGCGAATTTTTGGTTTGTGTTTCAATTTGTGCTTTTATCTGGTTTTCTATATATTAATTATGTTATTGGTCGGGTTAGAAGGGTACATGAATGAACGGTGACCACATTTAAATGCATGGTTAAAAAATCTTAGTAACTACTTATACCAACAAGGTGCAGTTTACTTTTCGGTGGCTTAATCATAAGGAATTCAAAGGTAAATAGATGCTTAACTTGGAACTATTCTGTCCCCCCAAGAAGAGGTGGCGCAGTGGTTGAAGACTTGGGTTTTGAAAGTATCCCTCTTAAGGTCCTGAATTCGAGACTCACCTGTGATATCTCCGGTGTCTGGTCCAGGGACATGCGTGGTTACCCTTGTTTCAAAAAGACTTAGGAACTATTCTAGATTGAGTGACCTCCTAGAACTTTTCCTTAGAAATAGGAGCGAGGAGAAAGAAAGAATTTACATTGGTTTGTAAGGATAGTTTTCACTCTTAGAAGCGTTCAATAGGTAGTGCGGTCAGGCTGCAGGAGAATATTGGGTGCAAGAGAGGCTGAGGCCGGATTTTGAATCTTGGGCTTAGGCGTGACCAAGTCGTAGGGAATGTAGGGGAATACCGGGGGCAAGAGAGGCCGAGTCCAAATTTCGAATCATGTTCCCAATCTTAGGCCTGGGCGTTACACTTATCTACTTAGCCCCTCACAAAACGTAGGAATCCATTGAATTTCGCTGCTTGATCCTCACCACTGGACTGTATGCTACCAGTTGAAATCTAGGTAGTCTCCACTCACATTTGTTCATTGTTGTTTGTTGCTCAAAGTCTTCCTCCATTTTACTTTTTCTTTTCATGGGACTGATTTGTTTTGGTTGACATCCTTATTTGGTATAGAAGGAGCAGGCAGCAAAACCCCTTGCTTCTGTCTCTGCCCTGTTGACACATTTATTTAAGGCAGGAGAAAAGGCAGTGAAACTTTTTTAAAAATAAAACAAGAAAAGGAAAATGTTGGGAAAAATGAGGAATTGATTTGGATTGACATTTTCCTCCTGGTCATTATTAGTCTCTACCTACATTCTAAATCCTACATTACAAATGTTTCCAAGGGGTGGCACAGTGGTTGAAGACTTGAGCTTTAAAGGTATGCTCCCTTCAAGGTCCCAGGTTCGAGACTCACCCGTGACATTACTTCTTTGATGCCAGGGAGACCTCATGCTCTGATACCATGTTAAATTATGTTAAACTACCAATCAATCCAAAAGTATAAACTGATGGATTGGGGTAAATTTAATTGTATTAACCAACAATTTTTTTTTCATCCATACAGGTTTTTTCATGGTTTGTACAATGATCAGCACAGAGGCAGGAATGGGTCAGTCTACAGAACCAACAAAGATTAAATCCGCCAAAAATGGAATTCGGGCATCGCCATCCATGTTTAGAAGATGGGGTAGAAGACACCCATTTATCAGATATGGACTTCCAATGATCTCTCTCACTGTGTTTGGGGCAGTGGGTCTTGGCCATCTCTTGCAAGGAAGGTTAGTGATTACTGGTGCTGTCTCAAATTTAAGATTCATTGTGATAGTCTTGTGTTTTTTTGGATATCAATTTCATATTTAGTGTCTCATTTTCCAAGTGGAGAAATACATGTCCTCAGGATTGTCATGACTCAATGTAGAATTCTGAATAAGCCCGTTTTTATACGTTAGAAATATGTTGATTGCTAAAATTCTCCAAGAATGGAGATGAGAAATTTCTTGTGTAGCCCTAACATTCTTTATTCTAAATTCAATGAGGCCACCACAATGTCGCCGCCTCGAAATAATCGTCGGATGTTGATCGAGAAATATGTATGCTTCTAATAACTATCGGGTACAATACAAAAGTAAATTACTTTTATAACTTTGTTCTCACACATCCGACTGTGCAAAACTGTCATTCACTGTGGAGCGGTCTCATCAAATAATTTCTCTGGACTTGCTTTTCACAGTGGTTTCCTTCATGTCTTGGAAAGTTCTCTTTGGACTGGAGTAAACTGTTTTTTTATAGTTTTTTTTTAATATATCTCGGTGTATAGGTTAGCTTACGTGCACCTCGACAATCCTTACAGTATATACTCACCCTACAATATTTGAATGTCAGGAATATGTAGAAAATTAATTCTGAAGTAGGTCAACCCATAATAGTTTTCCAAGCCCTTAATTAGGTGATAGCATGGATTAAACTCATCACCTTCTAGTTTTAAAAATCCTCTCTAAGCCCCTAAATTGCTTAAGGATGGGAAATACTTCCTTTAGCTGTATGCACAATACTACCGTATACAAAGAGTTTAAGTCATAGATTTTTCAAATTTTCTTTTATGTTCGTGAGTATTCGACCCAACTTAAATACATATTGACTATTCTTATAGAATAATCATCCGATCCTACTATATTTGATTGTCAAGGAAATACATGGGAAAATAATTCATGATAGGTGATCACCATGGATTGAACTCATAATCTCTTAGTTCGCCGTTGAATGACAACTAGACCAACGTTAACCTCAAAAGATTTCTAGTTTTTAGAAAACAGCTTCTTTTTTTTTTTTAAGAAAATAACTTATCATGATCATGAGAATTTTAATGTTATTTATATGTTTCTTATAGGTTAGATTATCATTCTCGTTGCTAATTGGAATTTTGGTGCACTTTTATAATTTCACTCATGAATGAAATTGTCTCTTATTAAAAAAACTTTATCATTCTCATACTTTTCTATTTTATACTCTTTTAAAAGACTTGCCGGACTTTGTAGTTCAGTAAGGATATTGCAAAGGTAAAAGATGATCAAGAATGGGAGATCACTGAGATGAGAAAAGCGCTTTCAAGAACAGGACCTATTGATGCATTCAAGCCGAAAAACATATCTCTAGAGGAGGAACTGAGGGTATTACTCTTTCTCGTTGCTATTCGTTTGTCGTTATTTGCAGTTTCATTATATGCAGCCTAATTGTTGCTAATTTTCAGGCTTTACAAGAAAAGGTAGACATCAATAACTATGAGTACAAGAAAATTCCAAAGCCTACCGATCGAACGTCCTAAAACTTTGCCCTCCTTGATGCATACGAGAGAACTGCTCAGGTATTTTTGTTTAAGAACAATTTAGGTCATACCTTGGCATGATCTATCTTTTACTGTCTACGTATGTGGCTCAATTTAGGCCACCTTTTTTGTCTGAATTTTGTTTTGGATAAAAGAGCACTAAAATGTAGCCTAAATTGGAGGTCAGGTCAGGCATGACTTAAATTGAGCTCTCTTTTTGTTTCCTACCTGTGATGTTTTGTATATGTATGAGATGCAAGTTAGATTTAGTTTCTGATGAGAATATTTGGAATGGATGTTTGTCTCCAAGGGGTGGT

mRNA sequence

GCGATGATTCGAGACATCGGCTTGTTTTTTCAGTTTCATTCACTTTCTTATTGTTCGTCAACACCATCAGCTTGGCGTAGATTGGGGTGGCACAGTGGTTGAAGACTTGAGCTTTAAAGGTTTTTTCATGGTTTGTACAATGATCAGCACAGAGGCAGGAATGGGTCAGTCTACAGAACCAACAAAGATTAAATCCGCCAAAAATGGAATTCGGGCATCGCCATCCATGTTTAGAAGATGGGGTAGAAGACACCCATTTATCAGATATGGACTTCCAATGATCTCTCTCACTGTGTTTGGGGCAGTGGGTCTTGGCCATCTCTTGCAAGGAAGTAAGGATATTGCAAAGGTAAAAGATGATCAAGAATGGGAGATCACTGAGATGAGAAAAGCGCTTTCAAGAACAGGACCTATTGATGCATTCAAGCCGAAAAACATATCTCTAGAGGAGGAACTGAGGGCTTTACAAGAAAAGGTAGACATCAATAACTATGAGTACAAGAAAATTCCAAAGCCTACCGATCGAACGTCCTAAAACTTTGCCCTCCTTGATGCATACGAGAGAACTGCTCAGGTATTTTTGTTTAAGAACAATTTAGGTCATACCTTGGCATGATCTATCTTTTACTGTCTACGTATGTGGCTCAATTTAGGCCACCTTTTTTGTCTGAATTTTGTTTTGGATAAAAGAGCACTAAAATGTAGCCTAAATTGGAGGTCAGGTCAGGCATGACTTAAATTGAGCTCTCTTTTTGTTTCCTACCTGTGATGTTTTGTATATGTATGAGATGCAAGTTAGATTTAGTTTCTGATGAGAATATTTGGAATGGATGTTTGTCTCCAAGGGGTGGT

Coding sequence (CDS)

ATGGTTTGTACAATGATCAGCACAGAGGCAGGAATGGGTCAGTCTACAGAACCAACAAAGATTAAATCCGCCAAAAATGGAATTCGGGCATCGCCATCCATGTTTAGAAGATGGGGTAGAAGACACCCATTTATCAGATATGGACTTCCAATGATCTCTCTCACTGTGTTTGGGGCAGTGGGTCTTGGCCATCTCTTGCAAGGAAGTAAGGATATTGCAAAGGTAAAAGATGATCAAGAATGGGAGATCACTGAGATGAGAAAAGCGCTTTCAAGAACAGGACCTATTGATGCATTCAAGCCGAAAAACATATCTCTAGAGGAGGAACTGAGGGCTTTACAAGAAAAGGTAGACATCAATAACTATGAGTACAAGAAAATTCCAAAGCCTACCGATCGAACGTCCTAA

Protein sequence

MVCTMISTEAGMGQSTEPTKIKSAKNGIRASPSMFRRWGRRHPFIRYGLPMISLTVFGAVGLGHLLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAFKPKNISLEEELRALQEKVDINNYEYKKIPKPTDRTS

Homology

[Close]

BLAST of Sed0026413 vs. NCBI nr
Match: XP_004142437.1 (uncharacterized protein LOC101208712 isoform X1 [Cucumis sativus] >XP_004142438.1 uncharacterized protein LOC101208712 isoform X1 [Cucumis sativus] >XP_031742066.1 uncharacterized protein LOC101208712 isoform X1 [Cucumis sativus])

HSP 1 Score: 243.4 bits (620), Expect = 1.1e-60
Identity = 119/131 (90.84%), Postives = 123/131 (93.89%), Query Frame = 0


Query: 5   MISTEAGMGQSTEPTKIKSAKNGIRASPSMFRRWGRRHPFIRYGLPMISLTVFGAVGLGH 64
           M STEAGMGQS EP KI SA N  RASPSMFRRWGRRHPFIRYGLPMISLTV GAVGLGH
Sbjct: 1   MTSTEAGMGQSAEPKKISSASNATRASPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH 60

Query: 65  LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAFKPKNISLEEELRALQEKVDINNYEY 124
           LLQGSKDIAKVKDDQEWEITEMR+ALSRTGPIDA+KPKNISLEEELRALQ+KVDINNYEY
Sbjct: 61  LLQGSKDIAKVKDDQEWEITEMREALSRTGPIDAYKPKNISLEEELRALQQKVDINNYEY 120

Query: 125 KKIPKPTDRTS 136
           K+IPKPTDRTS
Sbjct: 121 KRIPKPTDRTS 131

[Close]

BLAST of Sed0026413 vs. NCBI nr
Match: XP_008446874.1 (PREDICTED: uncharacterized protein LOC103489460 isoform X1 [Cucumis melo] >XP_008446875.1 PREDICTED: uncharacterized protein LOC103489460 isoform X1 [Cucumis melo] >XP_016900287.1 PREDICTED: uncharacterized protein LOC103489460 isoform X1 [Cucumis melo])

HSP 1 Score: 242.7 bits (618), Expect = 1.9e-60
Identity = 118/131 (90.08%), Postives = 124/131 (94.66%), Query Frame = 0


Query: 5   MISTEAGMGQSTEPTKIKSAKNGIRASPSMFRRWGRRHPFIRYGLPMISLTVFGAVGLGH 64
           M STEAGMG+STEP KI SA N  RASPSMFRRWGRRHPFIRYGLPMISLTV GAVGLGH
Sbjct: 1   MTSTEAGMGESTEPKKISSASNAARASPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH 60

Query: 65  LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAFKPKNISLEEELRALQEKVDINNYEY 124
           LLQGSKDIAKVKDDQEWEITEMR+ALSRTGPIDA+KPKNISLEEELRALQE+VDINNYEY
Sbjct: 61  LLQGSKDIAKVKDDQEWEITEMREALSRTGPIDAYKPKNISLEEELRALQEQVDINNYEY 120

Query: 125 KKIPKPTDRTS 136
           K+IP+PTDRTS
Sbjct: 121 KRIPRPTDRTS 131

[Close]

BLAST of Sed0026413 vs. NCBI nr
Match: XP_038891357.1 (uncharacterized protein LOC120080793 isoform X2 [Benincasa hispida] >XP_038891358.1 uncharacterized protein LOC120080793 isoform X2 [Benincasa hispida] >XP_038891360.1 uncharacterized protein LOC120080793 isoform X2 [Benincasa hispida] >XP_038891361.1 uncharacterized protein LOC120080793 isoform X2 [Benincasa hispida] >XP_038891362.1 uncharacterized protein LOC120080793 isoform X2 [Benincasa hispida])

HSP 1 Score: 241.9 bits (616), Expect = 3.2e-60
Identity = 118/131 (90.08%), Postives = 123/131 (93.89%), Query Frame = 0


Query: 5   MISTEAGMGQSTEPTKIKSAKNGIRASPSMFRRWGRRHPFIRYGLPMISLTVFGAVGLGH 64
           M STEAG+GQSTEP KI S  N  RASPSMFRRWGRRHPFIRYGLPMISLTV GAVGLGH
Sbjct: 1   MTSTEAGIGQSTEPKKIASVNNATRASPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH 60

Query: 65  LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAFKPKNISLEEELRALQEKVDINNYEY 124
           LLQGSKDIAKV+DDQEWEITEMRKALSRTGPIDA+KPKNISLEEELRALQEKVDINNYEY
Sbjct: 61  LLQGSKDIAKVRDDQEWEITEMRKALSRTGPIDAYKPKNISLEEELRALQEKVDINNYEY 120

Query: 125 KKIPKPTDRTS 136
           K+IPKPTD+TS
Sbjct: 121 KRIPKPTDQTS 131

[Close]

BLAST of Sed0026413 vs. NCBI nr
Match: XP_022956367.1 (uncharacterized protein LOC111458129 [Cucurbita moschata] >XP_022956368.1 uncharacterized protein LOC111458129 [Cucurbita moschata] >XP_022956369.1 uncharacterized protein LOC111458129 [Cucurbita moschata] >XP_022956370.1 uncharacterized protein LOC111458129 [Cucurbita moschata])

HSP 1 Score: 240.7 bits (613), Expect = 7.1e-60
Identity = 119/131 (90.84%), Postives = 122/131 (93.13%), Query Frame = 0


Query: 5   MISTEAGMGQSTEPTKIKSAKNGIRASPSMFRRWGRRHPFIRYGLPMISLTVFGAVGLGH 64
           M STEAGMGQSTE  K  SA N  R+SPSMFRRWGRRHPFIRYGLPMISLTV GAVGLGH
Sbjct: 1   MTSTEAGMGQSTEQKKSVSANNAARSSPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH 60

Query: 65  LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAFKPKNISLEEELRALQEKVDINNYEY 124
           LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDA+KPKNISLEEELRALQEKVDINNYEY
Sbjct: 61  LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEELRALQEKVDINNYEY 120

Query: 125 KKIPKPTDRTS 136
           K+IPKPTDRTS
Sbjct: 121 KRIPKPTDRTS 131

[Close]

BLAST of Sed0026413 vs. NCBI nr
Match: XP_023533207.1 (uncharacterized protein LOC111795161 [Cucurbita pepo subsp. pepo] >XP_023533215.1 uncharacterized protein LOC111795161 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 239.6 bits (610), Expect = 1.6e-59
Identity = 118/131 (90.08%), Postives = 122/131 (93.13%), Query Frame = 0


Query: 5   MISTEAGMGQSTEPTKIKSAKNGIRASPSMFRRWGRRHPFIRYGLPMISLTVFGAVGLGH 64
           M STEAGMGQSTE  K  SA N  R+SPSMF+RWGRRHPFIRYGLPMISLTV GAVGLGH
Sbjct: 1   MTSTEAGMGQSTEQKKSVSANNAARSSPSMFKRWGRRHPFIRYGLPMISLTVLGAVGLGH 60

Query: 65  LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAFKPKNISLEEELRALQEKVDINNYEY 124
           LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDA+KPKNISLEEELRALQEKVDINNYEY
Sbjct: 61  LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEELRALQEKVDINNYEY 120

Query: 125 KKIPKPTDRTS 136
           K+IPKPTDRTS
Sbjct: 121 KRIPKPTDRTS 131

[Close]

BLAST of Sed0026413 vs. ExPASy TrEMBL
Match: A0A1S4DWC3 (uncharacterized protein LOC103489460 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489460 PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 9.1e-61
Identity = 118/131 (90.08%), Postives = 124/131 (94.66%), Query Frame = 0


Query: 5   MISTEAGMGQSTEPTKIKSAKNGIRASPSMFRRWGRRHPFIRYGLPMISLTVFGAVGLGH 64
           M STEAGMG+STEP KI SA N  RASPSMFRRWGRRHPFIRYGLPMISLTV GAVGLGH
Sbjct: 1   MTSTEAGMGESTEPKKISSASNAARASPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH 60

Query: 65  LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAFKPKNISLEEELRALQEKVDINNYEY 124
           LLQGSKDIAKVKDDQEWEITEMR+ALSRTGPIDA+KPKNISLEEELRALQE+VDINNYEY
Sbjct: 61  LLQGSKDIAKVKDDQEWEITEMREALSRTGPIDAYKPKNISLEEELRALQEQVDINNYEY 120

Query: 125 KKIPKPTDRTS 136
           K+IP+PTDRTS
Sbjct: 121 KRIPRPTDRTS 131

[Close]

BLAST of Sed0026413 vs. ExPASy TrEMBL
Match: A0A6J1GWL5 (uncharacterized protein LOC111458129 OS=Cucurbita moschata OX=3662 GN=LOC111458129 PE=3 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 3.5e-60
Identity = 119/131 (90.84%), Postives = 122/131 (93.13%), Query Frame = 0


Query: 5   MISTEAGMGQSTEPTKIKSAKNGIRASPSMFRRWGRRHPFIRYGLPMISLTVFGAVGLGH 64
           M STEAGMGQSTE  K  SA N  R+SPSMFRRWGRRHPFIRYGLPMISLTV GAVGLGH
Sbjct: 1   MTSTEAGMGQSTEQKKSVSANNAARSSPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH 60

Query: 65  LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAFKPKNISLEEELRALQEKVDINNYEY 124
           LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDA+KPKNISLEEELRALQEKVDINNYEY
Sbjct: 61  LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEELRALQEKVDINNYEY 120

Query: 125 KKIPKPTDRTS 136
           K+IPKPTDRTS
Sbjct: 121 KRIPKPTDRTS 131

[Close]

BLAST of Sed0026413 vs. ExPASy TrEMBL
Match: A0A6J1HX89 (uncharacterized protein LOC111468648 OS=Cucurbita maxima OX=3661 GN=LOC111468648 PE=3 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 1.0e-59
Identity = 118/131 (90.08%), Postives = 122/131 (93.13%), Query Frame = 0


Query: 5   MISTEAGMGQSTEPTKIKSAKNGIRASPSMFRRWGRRHPFIRYGLPMISLTVFGAVGLGH 64
           M STEAG+GQSTE  K  SA N  R+SPSMFRRWGRRHPFIRYGLPMISLTV GAVGLGH
Sbjct: 1   MTSTEAGVGQSTEQKKSVSANNAARSSPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH 60

Query: 65  LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAFKPKNISLEEELRALQEKVDINNYEY 124
           LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDA+KPKNISLEEELRALQEKVDINNYEY
Sbjct: 61  LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEELRALQEKVDINNYEY 120

Query: 125 KKIPKPTDRTS 136
           K+IPKPTDRTS
Sbjct: 121 KRIPKPTDRTS 131

[Close]

BLAST of Sed0026413 vs. ExPASy TrEMBL
Match: A0A6J1CBH5 (uncharacterized protein LOC111010064 OS=Momordica charantia OX=3673 GN=LOC111010064 PE=3 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 1.0e-56
Identity = 113/131 (86.26%), Postives = 119/131 (90.84%), Query Frame = 0


Query: 5   MISTEAGMGQSTEPTKIKSAKNGIRASPSMFRRWGRRHPFIRYGLPMISLTVFGAVGLGH 64
           M S E GM QS EP KI SA N  RASPSMFRRWGRRHPFIRYGLPMISLTV GAVGLGH
Sbjct: 1   MTSPEVGMVQSMEPNKISSATNTARASPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH 60

Query: 65  LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAFKPKNISLEEELRALQEKVDINNYEY 124
           LLQGSKDIAKVKDDQEWEITEMRKALSRTGP+DA+KPKNISLEEELRALQEKV+IN+YEY
Sbjct: 61  LLQGSKDIAKVKDDQEWEITEMRKALSRTGPVDAYKPKNISLEEELRALQEKVNINDYEY 120

Query: 125 KKIPKPTDRTS 136
           K+IPKP+ RTS
Sbjct: 121 KRIPKPSGRTS 131

[Close]

BLAST of Sed0026413 vs. ExPASy TrEMBL
Match: A0A5A7SXX4 (Cytochrome c oxidase assembly protein cox16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002640 PE=3 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 9.1e-53
Identity = 107/132 (81.06%), Postives = 118/132 (89.39%), Query Frame = 0


Query: 4   TMISTEAGMGQSTEPTKIKSAKNGIRASPSMFRRWGRRHPFIRYGLPMISLTVFGAVGLG 63
           T I TEAGMG+STEP KI SA N  RASPSMFRRWGRRHPFIRYGLPMISLTV GAVGLG
Sbjct: 158 TDILTEAGMGESTEPKKISSASNAARASPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLG 217

Query: 64  HLLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAFKPKNISLEEELRALQEKVDINNYE 123
           HLLQGSKDIAKVKDDQEWEITEMR+ALSRTGPIDAF   ++ + ++ +ALQE+VDINNYE
Sbjct: 218 HLLQGSKDIAKVKDDQEWEITEMREALSRTGPIDAFAINSL-IVDDFQALQEQVDINNYE 277

Query: 124 YKKIPKPTDRTS 136
           YK+IP+PTDRTS
Sbjct: 278 YKRIPRPTDRTS 288

[Close]

BLAST of Sed0026413 vs. TAIR 10
Match: AT4G14145.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 180.3 bits (456), Expect = 1.1e-45
Identity = 87/123 (70.73%), Postives = 100/123 (81.30%), Query Frame = 0


Query: 13  GQSTEPTKIKSAKNGIRASPSMFRRWGRRHPFIRYGLPMISLTVFGAVGLGHLLQGSKDI 72
           G  T PT        ++ S + F+RWGRRHPF+RYGLPMISLTVFGA+GLG LLQGSKDI
Sbjct: 17  GSGTTPT------GTLKQSSASFKRWGRRHPFVRYGLPMISLTVFGALGLGQLLQGSKDI 76

Query: 73  AKVKDDQEWEITEMRKALSRTGPIDAFKPKNISLEEELRALQEKVDINNYEYKKIPKPTD 132
           AKVKDDQEWEI E RKALSRTGP+DA+KPKN S+E+EL+A+QEKVDIN YEYKKIPK  +
Sbjct: 77  AKVKDDQEWEIIETRKALSRTGPVDAYKPKNTSIEDELKAMQEKVDINTYEYKKIPKLNE 133

Query: 133 RTS 136
             S
Sbjct: 137 SKS 133

The following BLAST results are available for this feature:

BLAST of Sed0026413 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142437.1	1.1e-60	90.84	uncharacterized protein LOC101208712 isoform X1 [Cucumis sativus] >XP_004142438....	[more]
XP_008446874.1	1.9e-60	90.08	PREDICTED: uncharacterized protein LOC103489460 isoform X1 [Cucumis melo] >XP_00...	[more]
XP_038891357.1	3.2e-60	90.08	uncharacterized protein LOC120080793 isoform X2 [Benincasa hispida] >XP_03889135...	[more]
XP_022956367.1	7.1e-60	90.84	uncharacterized protein LOC111458129 [Cucurbita moschata] >XP_022956368.1 unchar...	[more]
XP_023533207.1	1.6e-59	90.08	uncharacterized protein LOC111795161 [Cucurbita pepo subsp. pepo] >XP_023533215....	[more]

BLAST of Sed0026413 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0026413 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DWC3	9.1e-61	90.08	uncharacterized protein LOC103489460 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1GWL5	3.5e-60	90.84	uncharacterized protein LOC111458129 OS=Cucurbita moschata OX=3662 GN=LOC1114581...	[more]
A0A6J1HX89	1.0e-59	90.08	uncharacterized protein LOC111468648 OS=Cucurbita maxima OX=3661 GN=LOC111468648...	[more]
A0A6J1CBH5	1.0e-56	86.26	uncharacterized protein LOC111010064 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A5A7SXX4	9.1e-53	81.06	Cytochrome c oxidase assembly protein cox16 OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Sed0026413 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G14145.1	1.1e-45	70.73	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020164	Cytochrome c oxidase assembly protein COX16	PFAM	PF14138	COX16	coord: 45..131 e-value: 9.0E-19 score: 67.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0026413.1	Sed0026413.1	mRNA
Sed0026413.2	Sed0026413.2	mRNA
Sed0026413.3	Sed0026413.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0031966	mitochondrial membrane