Sed0026407 (gene) Chayote v1

Overview


Name	Sed0026407
Type	gene
Organism	Sechium edule (Chayote v1)
Description	ribonuclease H2 subunit C
Location	LG01: 14552884 .. 14555329 (+)
RNA-Seq Expression	Sed0026407
Synteny	Sed0026407

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATTTTTGAGCGGGAAAATCGATCTGAATGCTGAAAAGAGCGGGAAGGGTAGAATCTGTAGAAGAAATGGGCGATTGAATTTCGTCGCCATTAATCGGAAGCATCAACGAGGGGTTAGGGTTTCTGAATTTGGGACTGCTTCAGAATTCGATCTAATGGACGAAGAAAACGGGAAGGCAAAGGAAGCAATCGTGGATTTCAATTCTGCAGCCGTCGATCTCAGCGGCAAAGTTCATCAGCTTCCCTGTGCCATCAAATTAGACGGCCCCTGCTCCGTCTCTCATCATTTCAAGCCTAAATCCACCGGTAACAATGCCCTAATTTTCTCCGTTTCTCACTTTCCGTTTTAGGGTTTTGGGTGATTTGGTTGTAACTTTTGTGGGTTCTTTCTGAAAGGAGTTGAGGTTGATGGTTTGGGCGTCGAGGAAGCTTATTTCCGAGGAAGAAAGTTGCAGGGTGCCACCATTTCCCTTCCCGAAGGTTACTCTGGTATGAACTTCTTTGAAATTGTGTATCTTTTTTTGTTTCCTTTGATTAATTCATTTGGTTGGTGTCTTATATGGTGGTAGTTTCAAGACCCTCTTCAATTGGTTTGGGTGAATAGGAATTTGAAGAGCATTCTGATTCTGGGTGTTCTTGTACTGAGATTTAGCTGCCACTGTTTTGTGTTATATGTGTGAGTTGAATGGGATTCATGAGATAATCGGGGATGAACTTTCTTAGATCTCTTAGGCTATTTTTCTGATTGGTGTTCTTATTTCACTTGTAATGTATGTACCCGGATATATTTTGACATGCCTTCCATTTAGTATGAGTATGGCATGTTTGTTTTGTTTATGGATGTTTTTTTTTTATATCCGGTGTTGTTTGTATCAGTCTACACCTACCTCGACGATTCTCACGGTATATATTTATTTGAACCTATAATATTTGGATGTCAAGTAAACTCGTATGAAATTATTTTCAATGTAGGTGGCCATCTTGGATTGCATGATGGTTGTTTTTGGAAGTTTGGAATGATAGAATCATTGGGGTTTTTATGATTGTAGAAAAAGGAAATGAGAAGAAATGTGACGATTCATTTGAATTTTTTTAATATTCTAGCCATTTGGAGTGTGATTATATATTAAGTGTCGTTGGTCTGTGCTTGAATGGATATCTAGATCGATATCTATTCTTCTATCCTTCTTTTTGTTGATTAGGGCTTCTCCTTTTGAGTTAATGTTCATGTTTTCTGTTAAAAAATGTTCTGTGTTCACGATATACGTAATTTGAACTTGTGCACTAAGGCAAGCAGGGCTTCATACAAGTTGTAATATTGATATAAGTTACTTTCTCACTTCATTCACCAATTTGAATCAAAGGGTCAATATTTCTGTAAATTTTGTTCTCCAGGCTATGTGATAGGGAGGAAAAGTCTTGGAAAGAGAAAAGCTTGTGACGAGTCCGAAGACTCAAGTCCTTGGCAGGTGAAGGCCAAATTTGAGAACATTACATATTGGAACCATGGCGCCCTGCCTTCGCAAGATGATACGTTCCGGCGTTCTTTTCACTGGCTCACTGTTGCACAAGCAGTATGATTCTTTCTGATTTTTACACACTAAATGATTAACAGTTTTTGGATTTAGATAGATATACGCATGTCTTGTTTGCATTTTTCTGAATCTAAGTACTTGAACTGCTCTGATGATTGAGAATAGTTTCATACCAGTTTTGTTATGTGACTCCACCGTTTCTGCATGTTTCTCTCCAAAATGGCCAAATATGAATAATGATTCATATTGTTTTTAACATTTCTTTTGACTGCTCTTTGGGGAATTATCATTATTGTTGCTTCTTTTTTTCTTTCTCTACCCATATATTGGACAACAAAATTCAGAAATAAATTACCATCATGGATTGACCAAATAATCAGAGGACCTTTGAGATACAAGAGGTGATGGTTCTAATTCATGGAGCCATCTACCTAAGAATTAATTTACTATAAGTTTTATTGACACTCAAATGTTGTAGGGTTTAGAGAGTATATACCGTAAAAATAGTCGAGTTATGTGAAAATTGACCTAAACACTTACAAATATAAAAAAAACTTCAGAAGTAAATTTACTTCCTAACGTTTTCCAACTCCTGAAATTTTGTTTATGGTTGCAGTTGCACCAACCGGTGACAGCAGAAGACTTAGTATCTGCATCTGCTGCTCTCAAGAACATGAGTTGATAATTGTCACGTGGCTCCGATAAGGAAATTTCTATTATTTCGGTAGTATAAAATGATTCGACATGGTTTGTACTCTGATTTATATTTTGTCAATGTTATCTACCTTACCAATTAATTTAACAGGTTTTGCATGCCAAGATGTGTTGCTAGCGACAATAATGTAGAACAGTAGAAGAATTTTAAAGCATGGTAGTTTAAGAAGTATGATTTACATATTATTTTAGTAAC

mRNA sequence

TAATTTTTGAGCGGGAAAATCGATCTGAATGCTGAAAAGAGCGGGAAGGGTAGAATCTGTAGAAGAAATGGGCGATTGAATTTCGTCGCCATTAATCGGAAGCATCAACGAGGGGTTAGGGTTTCTGAATTTGGGACTGCTTCAGAATTCGATCTAATGGACGAAGAAAACGGGAAGGCAAAGGAAGCAATCGTGGATTTCAATTCTGCAGCCGTCGATCTCAGCGGCAAAGTTCATCAGCTTCCCTGTGCCATCAAATTAGACGGCCCCTGCTCCGTCTCTCATCATTTCAAGCCTAAATCCACCGGAGTTGAGGTTGATGGTTTGGGCGTCGAGGAAGCTTATTTCCGAGGAAGAAAGTTGCAGGGTGCCACCATTTCCCTTCCCGAAGGTTACTCTGGCTATGTGATAGGGAGGAAAAGTCTTGGAAAGAGAAAAGCTTGTGACGAGTCCGAAGACTCAAGTCCTTGGCAGGTGAAGGCCAAATTTGAGAACATTACATATTGGAACCATGGCGCCCTGCCTTCGCAAGATGATACGTTCCGGCGTTCTTTTCACTGGCTCACTGTTGCACAAGCATTGCACCAACCGGTGACAGCAGAAGACTTAGTATCTGCATCTGCTGCTCTCAAGAACATGAGTTGATAATTGTCACGTGGCTCCGATAAGGAAATTTCTATTATTTCGGTAGTATAAAATGATTCGACATGGTTTGTACTCTGATTTATATTTTGTCAATGTTATCTACCTTACCAATTAATTTAACAGGTTTTGCATGCCAAGATGTGTTGCTAGCGACAATAATGTAGAACAGTAGAAGAATTTTAAAGCATGGTAGTTTAAGAAGTATGATTTACATATTATTTTAGTAAC

Coding sequence (CDS)

ATGGACGAAGAAAACGGGAAGGCAAAGGAAGCAATCGTGGATTTCAATTCTGCAGCCGTCGATCTCAGCGGCAAAGTTCATCAGCTTCCCTGTGCCATCAAATTAGACGGCCCCTGCTCCGTCTCTCATCATTTCAAGCCTAAATCCACCGGAGTTGAGGTTGATGGTTTGGGCGTCGAGGAAGCTTATTTCCGAGGAAGAAAGTTGCAGGGTGCCACCATTTCCCTTCCCGAAGGTTACTCTGGCTATGTGATAGGGAGGAAAAGTCTTGGAAAGAGAAAAGCTTGTGACGAGTCCGAAGACTCAAGTCCTTGGCAGGTGAAGGCCAAATTTGAGAACATTACATATTGGAACCATGGCGCCCTGCCTTCGCAAGATGATACGTTCCGGCGTTCTTTTCACTGGCTCACTGTTGCACAAGCATTGCACCAACCGGTGACAGCAGAAGACTTAGTATCTGCATCTGCTGCTCTCAAGAACATGAGTTGA

Protein sequence

MDEENGKAKEAIVDFNSAAVDLSGKVHQLPCAIKLDGPCSVSHHFKPKSTGVEVDGLGVEEAYFRGRKLQGATISLPEGYSGYVIGRKSLGKRKACDESEDSSPWQVKAKFENITYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLVSASAALKNMS

Homology

[Close]

BLAST of Sed0026407 vs. NCBI nr
Match: KAG6583796.1 (Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 276.9 bits (707), Expect = 1.1e-70
Identity = 134/166 (80.72%), Postives = 146/166 (87.95%), Query Frame = 0


Query: 1   MDEENGKAKEAIVDF----NSAAVDLSGKVHQLPCAIKLDGPCSVSHHFKPKSTGVEVDG 60
           MD EN + +E IVDF    +S AVDLSGKVHQLPCA+K DGPCSVS +FKPKSTG+EVDG
Sbjct: 1   MDSENERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG 60

Query: 61  LGVEEAYFRGRKLQGATISLPEGYSGYVIGRKSLGKRKACDESEDSSPWQVKAKFENITY 120
           L VE AYFRGRKLQGATISLPEGYSGYVIGRKS GKRKA +ES+DSS WQVKAKFENITY
Sbjct: 61  LSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENITY 120

Query: 121 WNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLVSASAALKNMS 163
           WNH  LP+QDDTF+RSFHWLTVAQALH+PVTAEDL +AS ALKNMS
Sbjct: 121 WNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS 166

[Close]

BLAST of Sed0026407 vs. NCBI nr
Match: XP_022927160.1 (uncharacterized protein C12B10.15c [Cucurbita moschata])

HSP 1 Score: 274.6 bits (701), Expect = 5.3e-70
Identity = 133/166 (80.12%), Postives = 145/166 (87.35%), Query Frame = 0


Query: 1   MDEENGKAKEAIVDF----NSAAVDLSGKVHQLPCAIKLDGPCSVSHHFKPKSTGVEVDG 60
           MD E  + +E IVDF    +S AVDLSGKVHQLPCA+K DGPCSVS +FKPKSTG+EVDG
Sbjct: 1   MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG 60

Query: 61  LGVEEAYFRGRKLQGATISLPEGYSGYVIGRKSLGKRKACDESEDSSPWQVKAKFENITY 120
           L VE AYFRGRKLQGATISLPEGYSGYVIGRKS GKRKA +ES+DSS WQVKAKFENITY
Sbjct: 61  LSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENITY 120

Query: 121 WNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLVSASAALKNMS 163
           WNH  LP+QDDTF+RSFHWLTVAQALH+PVTAEDL +AS ALKNMS
Sbjct: 121 WNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS 166

[Close]

BLAST of Sed0026407 vs. NCBI nr
Match: XP_038893586.1 (uncharacterized protein C12B10.15c [Benincasa hispida])

HSP 1 Score: 271.9 bits (694), Expect = 3.5e-69
Identity = 131/166 (78.92%), Postives = 145/166 (87.35%), Query Frame = 0


Query: 1   MDEENGKAKEAIVDF----NSAAVDLSGKVHQLPCAIKLDGPCSVSHHFKPKSTGVEVDG 60
           M+ EN +  E IVDF    +S A+DLSGKVHQLPCAIK DGPCSVS +FKPKSTG+E DG
Sbjct: 1   MNAENERKGEVIVDFDFESDSVALDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGIEFDG 60

Query: 61  LGVEEAYFRGRKLQGATISLPEGYSGYVIGRKSLGKRKACDESEDSSPWQVKAKFENITY 120
           L VEEAYFRGRKLQGATISLPEGYSGYV+G+KSLGKRKA ++ ++SSPWQVKAKF NITY
Sbjct: 61  LSVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKRKASEQDQNSSPWQVKAKFANITY 120

Query: 121 WNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLVSASAALKNMS 163
           WNH  LPSQDDTF+RSFHWLTVAQALH+PVTAEDL SAS ALKNMS
Sbjct: 121 WNHDTLPSQDDTFQRSFHWLTVAQALHKPVTAEDLASASTALKNMS 166

[Close]

BLAST of Sed0026407 vs. NCBI nr
Match: XP_023001622.1 (uncharacterized protein C12B10.15c [Cucurbita maxima])

HSP 1 Score: 270.8 bits (691), Expect = 7.7e-69
Identity = 131/166 (78.92%), Postives = 143/166 (86.14%), Query Frame = 0


Query: 1   MDEENGKAKEAIVDF----NSAAVDLSGKVHQLPCAIKLDGPCSVSHHFKPKSTGVEVDG 60
           MD E  + +E IVDF    +S AVDLSGKVHQLPCA+K DGPCSVS +FKPKSTG+EVDG
Sbjct: 1   MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG 60

Query: 61  LGVEEAYFRGRKLQGATISLPEGYSGYVIGRKSLGKRKACDESEDSSPWQVKAKFENITY 120
           L V+ AYFRGRKLQGATISLPEGY GYVIGRKSL KRKA +ES+DSS WQVKAKFENITY
Sbjct: 61  LSVQNAYFRGRKLQGATISLPEGYYGYVIGRKSLRKRKASEESQDSSSWQVKAKFENITY 120

Query: 121 WNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLVSASAALKNMS 163
           WNH  LP+QDDTF+RSFHWLTVAQALH+PVTAEDL  AS ALKNMS
Sbjct: 121 WNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLADASTALKNMS 166

[Close]

BLAST of Sed0026407 vs. NCBI nr
Match: XP_023519278.1 (uncharacterized protein C12B10.15c [Cucurbita pepo subsp. pepo])

HSP 1 Score: 270.4 bits (690), Expect = 1.0e-68
Identity = 131/166 (78.92%), Postives = 143/166 (86.14%), Query Frame = 0


Query: 1   MDEENGKAKEAIVDF----NSAAVDLSGKVHQLPCAIKLDGPCSVSHHFKPKSTGVEVDG 60
           MD E+ + +E IVDF    +S  VDLSGKVHQLPCA+K DGPCSVS +FKPKSTG+EVDG
Sbjct: 1   MDSESERKREVIVDFDFGSDSGDVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG 60

Query: 61  LGVEEAYFRGRKLQGATISLPEGYSGYVIGRKSLGKRKACDESEDSSPWQVKAKFENITY 120
           L VE AYFRGRKLQGATISLPEGYSGYVIGRKS GKRKA +ES+DSS WQVKAKFENITY
Sbjct: 61  LSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENITY 120

Query: 121 WNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLVSASAALKNMS 163
           WNH  LP+QDDTF RSFHWLTVAQALH+P TAEDL +AS ALKNMS
Sbjct: 121 WNHDTLPTQDDTFPRSFHWLTVAQALHKPATAEDLAAASTALKNMS 166

[Close]

BLAST of Sed0026407 vs. ExPASy Swiss-Prot
Match: Q10448 (Uncharacterized protein C12B10.15c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC12B10.15c PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.7e-07
Identity = 37/131 (28.24%), Postives = 55/131 (41.98%), Query Frame = 0


Query: 12  IVDFNSAAVDLSGKVHQLPCAIKLDGPCSVSHHFKPKSTGVEVDGLGVEEAYFRGRKLQG 71
           IV    A      K   LPC I  DGP  V  +F  K   +  +         RGR+L G
Sbjct: 7   IVKLEQAGSSNLEKASLLPCHISYDGPAPVFEYFHDK-IQISNNTHSKTTVCLRGRELNG 66

Query: 72  ATISLPEGYSGYVI-GRKSLGKRKACDESEDSSPWQVKAKFENITYWNHGAL-PSQDDTF 131
             + LPE Y+G V+     L   +  ++    S W + + FE +  WN   +  S+ D +
Sbjct: 67  EELDLPENYTGQVVLCDDGLENDETSEKEIPESTWCINSTFEKVMLWNRDNMRSSEKDQW 126

Query: 132 RRS-FHWLTVA 140
           +R    W+  A
Sbjct: 127 KRGVLEWIQFA 136

[Close]

BLAST of Sed0026407 vs. ExPASy TrEMBL
Match: A0A6J1EN41 (uncharacterized protein C12B10.15c OS=Cucurbita moschata OX=3662 GN=LOC111434094 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.6e-70
Identity = 133/166 (80.12%), Postives = 145/166 (87.35%), Query Frame = 0


Query: 1   MDEENGKAKEAIVDF----NSAAVDLSGKVHQLPCAIKLDGPCSVSHHFKPKSTGVEVDG 60
           MD E  + +E IVDF    +S AVDLSGKVHQLPCA+K DGPCSVS +FKPKSTG+EVDG
Sbjct: 1   MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG 60

Query: 61  LGVEEAYFRGRKLQGATISLPEGYSGYVIGRKSLGKRKACDESEDSSPWQVKAKFENITY 120
           L VE AYFRGRKLQGATISLPEGYSGYVIGRKS GKRKA +ES+DSS WQVKAKFENITY
Sbjct: 61  LSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENITY 120

Query: 121 WNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLVSASAALKNMS 163
           WNH  LP+QDDTF+RSFHWLTVAQALH+PVTAEDL +AS ALKNMS
Sbjct: 121 WNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS 166

[Close]

BLAST of Sed0026407 vs. ExPASy TrEMBL
Match: A0A6J1KH29 (uncharacterized protein C12B10.15c OS=Cucurbita maxima OX=3661 GN=LOC111495695 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.7e-69
Identity = 131/166 (78.92%), Postives = 143/166 (86.14%), Query Frame = 0


Query: 1   MDEENGKAKEAIVDF----NSAAVDLSGKVHQLPCAIKLDGPCSVSHHFKPKSTGVEVDG 60
           MD E  + +E IVDF    +S AVDLSGKVHQLPCA+K DGPCSVS +FKPKSTG+EVDG
Sbjct: 1   MDSEKERKREVIVDFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEVDG 60

Query: 61  LGVEEAYFRGRKLQGATISLPEGYSGYVIGRKSLGKRKACDESEDSSPWQVKAKFENITY 120
           L V+ AYFRGRKLQGATISLPEGY GYVIGRKSL KRKA +ES+DSS WQVKAKFENITY
Sbjct: 61  LSVQNAYFRGRKLQGATISLPEGYYGYVIGRKSLRKRKASEESQDSSSWQVKAKFENITY 120

Query: 121 WNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLVSASAALKNMS 163
           WNH  LP+QDDTF+RSFHWLTVAQALH+PVTAEDL  AS ALKNMS
Sbjct: 121 WNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLADASTALKNMS 166

[Close]

BLAST of Sed0026407 vs. ExPASy TrEMBL
Match: A0A5A7TIT8 (Ribonuclease H2 subunit C isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold129G00020 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 8.3e-69
Identity = 127/168 (75.60%), Postives = 145/168 (86.31%), Query Frame = 0


Query: 1   MDEENGKAKEAIVDF------NSAAVDLSGKVHQLPCAIKLDGPCSVSHHFKPKSTGVEV 60
           M+ +NG+  EA VDF      +  A+DLSGK+HQLPC IK DGPC VSH+FKPKSTG+EV
Sbjct: 1   MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60

Query: 61  DGLGVEEAYFRGRKLQGATISLPEGYSGYVIGRKSLGKRKACDESEDSSPWQVKAKFENI 120
           DGL VEEAYFRGRKLQGATISLPEGYSGYV+G+KSLGK K+ D+ +DSSPWQVKAKF+NI
Sbjct: 61  DGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSKSSDQCDDSSPWQVKAKFDNI 120

Query: 121 TYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLVSASAALKNMS 163
           TYWNH  LPSQDDTF+R+FHWLTVAQALH+PVTAEDL SASAAL N+S
Sbjct: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS 168

[Close]

BLAST of Sed0026407 vs. ExPASy TrEMBL
Match: A0A1S3C9A8 (uncharacterized protein C12B10.15c OS=Cucumis melo OX=3656 GN=LOC103498279 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 8.3e-69
Identity = 127/168 (75.60%), Postives = 145/168 (86.31%), Query Frame = 0


Query: 1   MDEENGKAKEAIVDF------NSAAVDLSGKVHQLPCAIKLDGPCSVSHHFKPKSTGVEV 60
           M+ +NG+  EA VDF      +  A+DLSGK+HQLPC IK DGPC VSH+FKPKSTG+EV
Sbjct: 1   MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60

Query: 61  DGLGVEEAYFRGRKLQGATISLPEGYSGYVIGRKSLGKRKACDESEDSSPWQVKAKFENI 120
           DGL VEEAYFRGRKLQGATISLPEGYSGYV+G+KSLGK K+ D+ +DSSPWQVKAKF+NI
Sbjct: 61  DGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSKSSDQCDDSSPWQVKAKFDNI 120

Query: 121 TYWNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLVSASAALKNMS 163
           TYWNH  LPSQDDTF+R+FHWLTVAQALH+PVTAEDL SASAAL N+S
Sbjct: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS 168

[Close]

BLAST of Sed0026407 vs. ExPASy TrEMBL
Match: A0A6J1CLH6 (ribonuclease H2 subunit C OS=Momordica charantia OX=3673 GN=LOC111012558 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 6.0e-67
Identity = 129/166 (77.71%), Postives = 142/166 (85.54%), Query Frame = 0


Query: 1   MDEENGKAKEAIVDF----NSAAVDLSGKVHQLPCAIKLDGPCSVSHHFKPKSTGVEVDG 60
           MD EN + +E IVD     +S AVDLSGKVHQLPC +KLDGPCSVSH+FKPK TG+EVDG
Sbjct: 1   MDAENERQREVIVDLDLGRDSEAVDLSGKVHQLPCTVKLDGPCSVSHYFKPKFTGIEVDG 60

Query: 61  LGVEEAYFRGRKLQGATISLPEGYSGYVIGRKSLGKRKACDESEDSSPWQVKAKFENITY 120
           L VEEAYFRGRKLQGATISLPEGYSG+V+GRK LGKRKA ++S+DS  W+VKAKF NITY
Sbjct: 61  LSVEEAYFRGRKLQGATISLPEGYSGFVLGRKDLGKRKASEQSQDS--WEVKAKFGNITY 120

Query: 121 WNHGALPSQDDTFRRSFHWLTVAQALHQPVTAEDLVSASAALKNMS 163
           WNH  LPSQDD FRRSFHWLTVAQALHQPVTAEDL SAS A K+MS
Sbjct: 121 WNHSTLPSQDDMFRRSFHWLTVAQALHQPVTAEDLASASTAHKSMS 164

[Close]

BLAST of Sed0026407 vs. TAIR 10
Match: AT2G39440.1 (CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 201.4 bits (511), Expect = 5.4e-52
Identity = 97/157 (61.78%), Postives = 120/157 (76.43%), Query Frame = 0


Query: 13  VDFNSAA-----VDLSGKVHQLPCAIKLDGPCSVSHHFKPKSTGVEVDGLGVEEAYFRGR 72
           +DF +AA     VDLS +VHQLPC I+ DGP  VSH+FKPKS+ VE+DG+  EEA+FRGR
Sbjct: 4   IDFRAAADENSIVDLSSQVHQLPCCIRFDGPVEVSHYFKPKSSDVEIDGVKTEEAHFRGR 63

Query: 73  KLQGATISLPEGYSGYVIGRKS----LGKRKACDESEDSSPWQVKAKFENITYWNHGALP 132
           KLQGATISLP GYSG+V+ + S     GKRKA   +ED+  W+VKAKF N+TYWNH +LP
Sbjct: 64  KLQGATISLPSGYSGFVLRQASNLNANGKRKASMPTEDNQCWEVKAKFNNLTYWNHDSLP 123

Query: 133 SQDDTFRRSFHWLTVAQALHQPVTAEDLVSASAALKN 161
           S+DDTF RSFHW ++A+ALH+PV  EDLV+ S   KN
Sbjct: 124 SKDDTFFRSFHWFSIAEALHKPVKVEDLVAVSHGGKN 160

The following BLAST results are available for this feature:

BLAST of Sed0026407 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6583796.1	1.1e-70	80.72	Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022927160.1	5.3e-70	80.12	uncharacterized protein C12B10.15c [Cucurbita moschata]	[more]
XP_038893586.1	3.5e-69	78.92	uncharacterized protein C12B10.15c [Benincasa hispida]	[more]
XP_023001622.1	7.7e-69	78.92	uncharacterized protein C12B10.15c [Cucurbita maxima]	[more]
XP_023519278.1	1.0e-68	78.92	uncharacterized protein C12B10.15c [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0026407 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q10448	6.7e-07	28.24	Uncharacterized protein C12B10.15c OS=Schizosaccharomyces pombe (strain 972 / AT...	[more]

BLAST of Sed0026407 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EN41	2.6e-70	80.12	uncharacterized protein C12B10.15c OS=Cucurbita moschata OX=3662 GN=LOC111434094...	[more]
A0A6J1KH29	3.7e-69	78.92	uncharacterized protein C12B10.15c OS=Cucurbita maxima OX=3661 GN=LOC111495695 P...	[more]
A0A5A7TIT8	8.3e-69	75.60	Ribonuclease H2 subunit C isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3C9A8	8.3e-69	75.60	uncharacterized protein C12B10.15c OS=Cucumis melo OX=3656 GN=LOC103498279 PE=4 ...	[more]
A0A6J1CLH6	6.0e-67	77.71	ribonuclease H2 subunit C OS=Momordica charantia OX=3673 GN=LOC111012558 PE=4 SV...	[more]

BLAST of Sed0026407 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39440.1	5.4e-52	61.78	CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.128.680		coord: 1..149 e-value: 1.3E-37 score: 130.2
None	No IPR available	PANTHER	PTHR47204	OS02G0168900 PROTEIN	coord: 16..155
IPR013924	Ribonuclease H2, subunit C	PFAM	PF08615	RNase_H2_suC	coord: 26..142 e-value: 4.8E-20 score: 72.2
IPR013924	Ribonuclease H2, subunit C	CDD	cd09271	RNase_H2-C	coord: 27..119 e-value: 8.65386E-35 score: 115.161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0026407.1	Sed0026407.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006401	RNA catabolic process
cellular_component	GO:0032299	ribonuclease H2 complex