Sed0026397 (gene) Chayote v1

Overview
NameSed0026397
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG01: 3062123 .. 3062621 (-)
RNA-Seq ExpressionSed0026397
SyntenySed0026397
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTCAACAACATCAATTTCAACAACAAAATTATGAGGCATCTTTGCCTACTCTCTCTGCTCCTCCTACCCTTGCTTCTTCCCTCCACCTCTTACTTACTCGTCCACGGGAGAGCCCTCCCGCTCGTTCCCTCGGGCAAGATCCCGCAGCCGGATGACTCCTGTGCCACTGACTTCAAATTGATACCGAAGATTTGTGGCGGTGGTGGTGGTTCCGACATGTCGTATCGGAGGAAGTTGTTGGACGAGCGGTTGTACACGTTTGAGTCCGGACCCAGCAGGAGGGGAGAAGGGCACAAATGAAGTTTGGGATTGATTGTACAAAAATTCTTTTCACAGCTTTATATGTTACTGTCCTAATTATAAACTCATTATGTCATTATATCATCATGGGTTGAGTATGTTTGTGATTTTCAGCATTTGGATTTGAGCCTATTGCTCTGTTTTTTTTTTAAAAAAAGAAATTATAAACTTATTTCTAGTTCTCATGGTTATGATAAA

mRNA sequence

CCTCAACAACATCAATTTCAACAACAAAATTATGAGGCATCTTTGCCTACTCTCTCTGCTCCTCCTACCCTTGCTTCTTCCCTCCACCTCTTACTTACTCGTCCACGGGAGAGCCCTCCCGCTCGTTCCCTCGGGCAAGATCCCGCAGCCGGATGACTCCTGTGCCACTGACTTCAAATTGATACCGAAGATTTGTGGCGGTGGTGGTGGTTCCGACATGTCGTATCGGAGGAAGTTGTTGGACGAGCGGTTGTACACGTTTGAGTCCGGACCCAGCAGGAGGGGAGAAGGGCACAAATGAAGTTTGGGATTGATTGTACAAAAATTCTTTTCACAGCTTTATATGTTACTGTCCTAATTATAAACTCATTATGTCATTATATCATCATGGGTTGAGTATGTTTGTGATTTTCAGCATTTGGATTTGAGCCTATTGCTCTGTTTTTTTTTTAAAAAAAGAAATTATAAACTTATTTCTAGTTCTCATGGTTATGATAAA

Coding sequence (CDS)

ATGAGGCATCTTTGCCTACTCTCTCTGCTCCTCCTACCCTTGCTTCTTCCCTCCACCTCTTACTTACTCGTCCACGGGAGAGCCCTCCCGCTCGTTCCCTCGGGCAAGATCCCGCAGCCGGATGACTCCTGTGCCACTGACTTCAAATTGATACCGAAGATTTGTGGCGGTGGTGGTGGTTCCGACATGTCGTATCGGAGGAAGTTGTTGGACGAGCGGTTGTACACGTTTGAGTCCGGACCCAGCAGGAGGGGAGAAGGGCACAAATGA

Protein sequence

MRHLCLLSLLLLPLLLPSTSYLLVHGRALPLVPSGKIPQPDDSCATDFKLIPKICGGGGGSDMSYRRKLLDERLYTFESGPSRRGEGHK
Homology
BLAST of Sed0026397 vs. NCBI nr
Match: KGN63303.1 (hypothetical protein Csa_022628 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 4.0e-11
Identity = 56/100 (56.00%), Postives = 63/100 (63.00%), Query Frame = 0

Query: 1   MRHLCLLSLLLLPLLLP-STSYLLVHGRALPLVPSGKIPQPD-----DSCATDFKLIPKI 60
           MRHLCLLSLLLLPLLLP +TS LLVHGRAL         QPD      S A +FKL PK 
Sbjct: 50  MRHLCLLSLLLLPLLLPTTTSNLLVHGRAL---------QPDATVEIGSHAHEFKLKPKD 109

Query: 61  -----CGGGGGSDMSYRRKLLDERLYTFESGPSRRGEGHK 90
                  GGGGSD S      ++R++T  SGPSRRG+GHK
Sbjct: 110 DDGGGDSGGGGSDTS------NQRVFTLASGPSRRGDGHK 134

BLAST of Sed0026397 vs. NCBI nr
Match: KAG6571236.1 (hypothetical protein SDJN03_30151, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.9 bits (180), Expect = 7.6e-10
Identity = 45/87 (51.72%), Postives = 55/87 (63.22%), Query Frame = 0

Query: 3  HLCLLSLLLLPLLLPSTSYLLVHGRALPLVPSGKIPQPDDSCATDFKLIPKICGGGGGSD 62
          HLCLLSLLLLPLLLP+TS  L+H RAL            +S A +FKL PK  GGGG   
Sbjct: 5  HLCLLSLLLLPLLLPATSTSLLHRRALQA----------NSDAHEFKLKPKDGGGGGNEG 64

Query: 63 MSYRRKLLDERLYTFESGPSRRGEGHK 90
                + ++R++T  SGPSRRG+GHK
Sbjct: 65 GGGGFDMSNQRVFTLASGPSRRGDGHK 81

BLAST of Sed0026397 vs. ExPASy TrEMBL
Match: A0A0A0LNA9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G425800 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.0e-11
Identity = 56/100 (56.00%), Postives = 63/100 (63.00%), Query Frame = 0

Query: 1   MRHLCLLSLLLLPLLLP-STSYLLVHGRALPLVPSGKIPQPD-----DSCATDFKLIPKI 60
           MRHLCLLSLLLLPLLLP +TS LLVHGRAL         QPD      S A +FKL PK 
Sbjct: 50  MRHLCLLSLLLLPLLLPTTTSNLLVHGRAL---------QPDATVEIGSHAHEFKLKPKD 109

Query: 61  -----CGGGGGSDMSYRRKLLDERLYTFESGPSRRGEGHK 90
                  GGGGSD S      ++R++T  SGPSRRG+GHK
Sbjct: 110 DDGGGDSGGGGSDTS------NQRVFTLASGPSRRGDGHK 134

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN63303.14.0e-1156.00hypothetical protein Csa_022628 [Cucumis sativus][more]
KAG6571236.17.6e-1051.72hypothetical protein SDJN03_30151, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LNA92.0e-1156.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G425800 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0026397.1Sed0026397.1mRNA