Sed0026395 (gene) Chayote v1

Overview


Name	Sed0026395
Type	gene
Organism	Sechium edule (Chayote v1)
Description	SWIM-type domain-containing protein
Location	LG03: 9409814 .. 9410560 (+)
RNA-Seq Expression	Sed0026395
Synteny	Sed0026395

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTATCTCAAAAGTGGTTACCCCATCTTTGCTTTTCCTTCCAAATTCTCATGGAGTCCGTTGCCTCTACTTCATCCCCACCGGACTGCCCCCATGTTCACCTTCCTCAGTTCGAGCCCTTCGTGTCTGCCCGGATAGCTCGTGCTCTCCAACATGACCTCCGTCTCCTTCACCACTCCGATTCTAGTTTCTTTGTGCTGGGAGCCACAGGCAATGTCTACATCGTGTCTCTATCCTCCACCCCCTCGTGCACTTGCCCCGATCGTATTACCCCATGCAAACACATACTGTTTATCTACATTCGAGCCCTGGGTGTGTCGCTGGATGATGTATGTCTTCGGCGGAGAAAGCTTCGACCTTGCCAATTGAATCGTTTGCTTGTTTCACCTGTTAGGATAGAGTCGCTTGCTGAAATTGGCCTACGTAGAGTATTTCATCAACAATTCTCTCAGGTAAAGGAGAGAGCTTGTGTAACTGTTGTAGATATGGAAGATGGGACTACGTGTCCGGTGTGTTTGGATGATATGAAGAAGAAGGATCAAGTGGTGGCTTGTACGACATGTCGAAATCTTGTTCACGAAGATTGTTTCTCGAGGTGGAAACGGAGCAAGGGAAGGAGTATCGTTAGTTGCGTAGTTTGTAGAGCAAGATGGAAAGATACGAGAAACCAACAGAAGTATTTGAATTTATCTGCCTATGTCAATGAGCATGGCGTAATCGACAACAATCTCTATGATGGTTAA

mRNA sequence

ATGGATGTATCTCAAAAGTGGTTACCCCATCTTTGCTTTTCCTTCCAAATTCTCATGGAGTCCGTTGCCTCTACTTCATCCCCACCGGACTGCCCCCATGTTCACCTTCCTCAGTTCGAGCCCTTCGTGTCTGCCCGGATAGCTCGTGCTCTCCAACATGACCTCCGTCTCCTTCACCACTCCGATTCTAGTTTCTTTGTGCTGGGAGCCACAGGCAATGTCTACATCGTGTCTCTATCCTCCACCCCCTCGTGCACTTGCCCCGATCGTATTACCCCATGCAAACACATACTGTTTATCTACATTCGAGCCCTGGGTGTGTCGCTGGATGATGTATGTCTTCGGCGGAGAAAGCTTCGACCTTGCCAATTGAATCGTTTGCTTGTTTCACCTGTTAGGATAGAGTCGCTTGCTGAAATTGGCCTACGTAGAGTATTTCATCAACAATTCTCTCAGGTAAAGGAGAGAGCTTGTGTAACTGTTGTAGATATGGAAGATGGGACTACGTGTCCGGTGTGTTTGGATGATATGAAGAAGAAGGATCAAGTGGTGGCTTGTACGACATGTCGAAATCTTGTTCACGAAGATTGTTTCTCGAGGTGGAAACGGAGCAAGGGAAGGAGTATCGTTAGTTGCGTAGTTTGTAGAGCAAGATGGAAAGATACGAGAAACCAACAGAAGTATTTGAATTTATCTGCCTATGTCAATGAGCATGGCGTAATCGACAACAATCTCTATGATGGTTAA

Coding sequence (CDS)

ATGGATGTATCTCAAAAGTGGTTACCCCATCTTTGCTTTTCCTTCCAAATTCTCATGGAGTCCGTTGCCTCTACTTCATCCCCACCGGACTGCCCCCATGTTCACCTTCCTCAGTTCGAGCCCTTCGTGTCTGCCCGGATAGCTCGTGCTCTCCAACATGACCTCCGTCTCCTTCACCACTCCGATTCTAGTTTCTTTGTGCTGGGAGCCACAGGCAATGTCTACATCGTGTCTCTATCCTCCACCCCCTCGTGCACTTGCCCCGATCGTATTACCCCATGCAAACACATACTGTTTATCTACATTCGAGCCCTGGGTGTGTCGCTGGATGATGTATGTCTTCGGCGGAGAAAGCTTCGACCTTGCCAATTGAATCGTTTGCTTGTTTCACCTGTTAGGATAGAGTCGCTTGCTGAAATTGGCCTACGTAGAGTATTTCATCAACAATTCTCTCAGGTAAAGGAGAGAGCTTGTGTAACTGTTGTAGATATGGAAGATGGGACTACGTGTCCGGTGTGTTTGGATGATATGAAGAAGAAGGATCAAGTGGTGGCTTGTACGACATGTCGAAATCTTGTTCACGAAGATTGTTTCTCGAGGTGGAAACGGAGCAAGGGAAGGAGTATCGTTAGTTGCGTAGTTTGTAGAGCAAGATGGAAAGATACGAGAAACCAACAGAAGTATTTGAATTTATCTGCCTATGTCAATGAGCATGGCGTAATCGACAACAATCTCTATGATGGTTAA

Protein sequence

MDVSQKWLPHLCFSFQILMESVASTSSPPDCPHVHLPQFEPFVSARIARALQHDLRLLHHSDSSFFVLGATGNVYIVSLSSTPSCTCPDRITPCKHILFIYIRALGVSLDDVCLRRRKLRPCQLNRLLVSPVRIESLAEIGLRRVFHQQFSQVKERACVTVVDMEDGTTCPVCLDDMKKKDQVVACTTCRNLVHEDCFSRWKRSKGRSIVSCVVCRARWKDTRNQQKYLNLSAYVNEHGVIDNNLYDG

Homology

[Close]

BLAST of Sed0026395 vs. NCBI nr
Match: XP_038885291.1 (uncharacterized protein LOC120075728 [Benincasa hispida])

HSP 1 Score: 392.1 bits (1006), Expect = 3.5e-105
Identity = 193/241 (80.08%), Postives = 212/241 (87.97%), Query Frame = 0


Query: 9   PHL-CFSFQILMESVASTSSPPDCPHVHLPQFE--PFVSARIARALQHDLRLLHHSDSSF 68
           PHL CFSFQILMESVASTSS       H+P+F+  P V+ RI RAL H LRLLH S S+F
Sbjct: 18  PHLHCFSFQILMESVASTSSLQ-----HVPRFKPSPAVADRIVRALHHHLRLLHRSGSNF 77

Query: 69  FVLGATGNVYIVSLSSTPSCTCPDRITPCKHILFIYIRALGVSLDDVCLRRRKLRPCQLN 128
           FVLGATGNVYIVSLSSTPSCTCPDRITPCKHILFIY++ALG+SLDD CLRRR LRPCQLN
Sbjct: 78  FVLGATGNVYIVSLSSTPSCTCPDRITPCKHILFIYLQALGLSLDDTCLRRRTLRPCQLN 137

Query: 129 RLLVSPVRIESLAEIGLRRVFHQQFSQVKERACVTVVDMEDGTTCPVCLDDMKKKDQVVA 188
           RLL +P+ ++SLAE+GLR VFHQQF QVKERA VTVVDMEDGTTCPVCLDDMKKKD+VVA
Sbjct: 138 RLLAAPIMLKSLAEVGLRDVFHQQFFQVKERASVTVVDMEDGTTCPVCLDDMKKKDRVVA 197

Query: 189 CTTCRNLVHEDCFSRWKRSKGRSIVSCVVCRARWKDTRNQQKYLNLSAYVNEHGVIDNNL 247
           C+TCRNLVHEDCFSRWKRSKGR  VSCVVCRARWKD ++QQKYLNLSAY+NEH  ID+NL
Sbjct: 198 CSTCRNLVHEDCFSRWKRSKGRRSVSCVVCRARWKDRKDQQKYLNLSAYINEHDAIDDNL 253

[Close]

BLAST of Sed0026395 vs. NCBI nr
Match: XP_022951525.1 (mitogen-activated protein kinase kinase kinase 1 [Cucurbita moschata])

HSP 1 Score: 382.1 bits (980), Expect = 3.6e-102
Identity = 186/236 (78.81%), Postives = 203/236 (86.02%), Query Frame = 0


Query: 14  SFQILMESVASTSSPPDCPHVHLPQFEP--FVSARIARALQHDLRLLHHSDSSFFVLGAT 73
           +FQILMESVASTSS PD P   LP FEP   ++ARI RAL H LRLLH SDSSFFVLGAT
Sbjct: 8   AFQILMESVASTSSAPDRPRPRLPWFEPSQAMTARIVRALHHHLRLLHRSDSSFFVLGAT 67

Query: 74  GNVYIVSLSSTPSCTCPDRITPCKHILFIYIRALGVSLDDVCLRRRKLRPCQLNRLLVSP 133
           GNVYIVSLSSTPSCTCPDRITPCKH+LF+YIRALGVSLDD CL RR LRPCQLNRLL +P
Sbjct: 68  GNVYIVSLSSTPSCTCPDRITPCKHMLFVYIRALGVSLDDACLWRRTLRPCQLNRLLTAP 127

Query: 134 VRIESLAEIGLRRVFHQQFSQVKERACVTVVDMEDGTTCPVCLDDMKKKDQVVACTTCRN 193
           V  ESLAEI LRRVFHQQF QVKER CV +VD+EDG  CPVCLDD+ K D+VVACTTCRN
Sbjct: 128 VMAESLAEISLRRVFHQQFFQVKERTCVPIVDIEDGAACPVCLDDL-KDDRVVACTTCRN 187

Query: 194 LVHEDCFSRWKRSKGRSIVSCVVCRARWKDTRNQQKYLNLSAYVNEHGVIDNNLYD 248
           LVH+DCFSRWKRSKGR  +SCVVCRARWKDT N+QKYLNLSAY++EH  +DNN Y+
Sbjct: 188 LVHDDCFSRWKRSKGRRNISCVVCRARWKDTTNEQKYLNLSAYLDEHDAVDNNRYN 242

[Close]

BLAST of Sed0026395 vs. NCBI nr
Match: KAG7020300.1 (Mitogen-activated protein kinase kinase kinase 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 376.3 bits (965), Expect = 2.0e-100
Identity = 183/232 (78.88%), Postives = 200/232 (86.21%), Query Frame = 0


Query: 19  MESVASTSSPPDCPHVHLPQFEP--FVSARIARALQHDLRLLHHSDSSFFVLGATGNVYI 78
           MESVASTSS PD P   LP FEP   ++ARI RAL H LRLLH SDSSFFVLGATGNVYI
Sbjct: 1   MESVASTSSAPDRPRPRLPWFEPSQAMTARIVRALHHHLRLLHRSDSSFFVLGATGNVYI 60

Query: 79  VSLSSTPSCTCPDRITPCKHILFIYIRALGVSLDDVCLRRRKLRPCQLNRLLVSPVRIES 138
           VSLSSTPSCTCPDRITPCKH+LF+YIRALGVSLDDVCL RR LRPCQLNRLL +PV  ES
Sbjct: 61  VSLSSTPSCTCPDRITPCKHVLFVYIRALGVSLDDVCLWRRTLRPCQLNRLLTAPVMAES 120

Query: 139 LAEIGLRRVFHQQFSQVKER-ACVTVVDMEDGTTCPVCLDDMKKKDQVVACTTCRNLVHE 198
           LAEI LRRVFHQQF QVKER +CV +VD+EDG  CPVCLDD+KK D+VVACTTCRNLVH+
Sbjct: 121 LAEISLRRVFHQQFFQVKERTSCVPIVDIEDGAACPVCLDDLKKDDRVVACTTCRNLVHD 180

Query: 199 DCFSRWKRSKGRSIVSCVVCRARWKDTRNQQKYLNLSAYVNEHGVIDNNLYD 248
           DCFSRWKRSKGR  +SCVVCRARWKD  N+QKYLNLSAY++EH  +DNN Y+
Sbjct: 181 DCFSRWKRSKGRRNISCVVCRARWKDMTNEQKYLNLSAYLDEHDAVDNNHYN 232

[Close]

BLAST of Sed0026395 vs. NCBI nr
Match: XP_023537388.1 (mitogen-activated protein kinase kinase kinase 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 373.6 bits (958), Expect = 1.3e-99
Identity = 184/229 (80.35%), Postives = 200/229 (87.34%), Query Frame = 0


Query: 11  LCFSFQILMESVASTSSPPDCPHVHLPQFEP--FVSARIARALQHDLRLLHHSDSSFFVL 70
           L  +FQILMESVASTSS PD P   LP FEP   ++ARI RAL H LRLLH SDSSFFVL
Sbjct: 5   LGIAFQILMESVASTSSAPDRPRPRLPWFEPSQAMTARIVRALHHHLRLLHRSDSSFFVL 64

Query: 71  GATGNVYIVSLSSTPSCTCPDRITPCKHILFIYIRALGVSLDDVCLRRRKLRPCQLNRLL 130
           GATGNVYIVSLSSTPSCTCPDRITPCKH+LF+YIRALGVSLDDVCL RR LRPCQLNRLL
Sbjct: 65  GATGNVYIVSLSSTPSCTCPDRITPCKHMLFVYIRALGVSLDDVCLWRRTLRPCQLNRLL 124

Query: 131 VSPVRIESLAEIGLRRVFHQQFSQVKER-ACVTVVDMEDGTTCPVCLDDMKKKDQVVACT 190
            +PV  ESLAEI LRRVFHQQF QVKER +CV +VD+EDGT CPVCLDD+KK D+VVACT
Sbjct: 125 TAPVMAESLAEISLRRVFHQQFFQVKERTSCVPIVDIEDGTACPVCLDDLKKDDRVVACT 184

Query: 191 TCRNLVHEDCFSRWKRSKGRSIVSCVVCRARWKDTRNQQKYLNLSAYVN 237
           TCRNLVH+DCFSRWKRSKGR  +SCVVCRARWKDT N+QKYLNLSAY++
Sbjct: 185 TCRNLVHDDCFSRWKRSKGRRNISCVVCRARWKDTTNEQKYLNLSAYLD 233

[Close]

BLAST of Sed0026395 vs. NCBI nr
Match: XP_016899980.1 (PREDICTED: uncharacterized protein LOC103488177 [Cucumis melo])

HSP 1 Score: 366.3 bits (939), Expect = 2.1e-97
Identity = 180/237 (75.95%), Postives = 203/237 (85.65%), Query Frame = 0


Query: 19  MESVASTSSPPDCPHVHLPQFEPF--VSARIARALQHDLRLLHHSDSSFFVLGATGNVYI 78
           MESVASTSSP       +P+F+P   V+ RI RAL H LRLLH S S+FFVLGATGNVYI
Sbjct: 1   MESVASTSSPRP-----VPRFKPSQPVADRIVRALHHHLRLLHRSGSNFFVLGATGNVYI 60

Query: 79  VSLSSTPSCTCPDRITPCKHILFIYIRALGVSLDDVCLRRRKLRPCQLNRLLVSPVRIES 138
           VSLSSTPSCTCPDRITPCKHILFIY++ALG+SLDDVCLRRR LRPCQLNRLL +P+ ++S
Sbjct: 61  VSLSSTPSCTCPDRITPCKHILFIYLQALGLSLDDVCLRRRTLRPCQLNRLLAAPIMLKS 120

Query: 139 LAEIGLRRVFHQQFSQVKERA------CVTVVDMEDGTTCPVCLDDMKKKDQVVACTTCR 198
           LAEIGLR+VFHQQF QV +RA      CVTV DMEDGT CPVCLDDMKK D+VVAC+TCR
Sbjct: 121 LAEIGLRKVFHQQFFQVNDRACSSSSSCVTVEDMEDGTACPVCLDDMKKNDRVVACSTCR 180

Query: 199 NLVHEDCFSRWKRSKGRSIVSCVVCRARWKDTRNQQKYLNLSAYVNEHGVIDNNLYD 248
           NLVHEDCF+RWKRSKGR  VSCVVCRARWKDT+++QKYLNLSAY+NEH  ID+NLY+
Sbjct: 181 NLVHEDCFTRWKRSKGRRNVSCVVCRARWKDTKDEQKYLNLSAYINEHDTIDDNLYN 232

[Close]

BLAST of Sed0026395 vs. ExPASy TrEMBL
Match: A0A6J1GJ16 (mitogen-activated protein kinase kinase kinase 1 OS=Cucurbita moschata OX=3662 GN=LOC111454315 PE=4 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 1.8e-102
Identity = 186/236 (78.81%), Postives = 203/236 (86.02%), Query Frame = 0


Query: 14  SFQILMESVASTSSPPDCPHVHLPQFEP--FVSARIARALQHDLRLLHHSDSSFFVLGAT 73
           +FQILMESVASTSS PD P   LP FEP   ++ARI RAL H LRLLH SDSSFFVLGAT
Sbjct: 8   AFQILMESVASTSSAPDRPRPRLPWFEPSQAMTARIVRALHHHLRLLHRSDSSFFVLGAT 67

Query: 74  GNVYIVSLSSTPSCTCPDRITPCKHILFIYIRALGVSLDDVCLRRRKLRPCQLNRLLVSP 133
           GNVYIVSLSSTPSCTCPDRITPCKH+LF+YIRALGVSLDD CL RR LRPCQLNRLL +P
Sbjct: 68  GNVYIVSLSSTPSCTCPDRITPCKHMLFVYIRALGVSLDDACLWRRTLRPCQLNRLLTAP 127

Query: 134 VRIESLAEIGLRRVFHQQFSQVKERACVTVVDMEDGTTCPVCLDDMKKKDQVVACTTCRN 193
           V  ESLAEI LRRVFHQQF QVKER CV +VD+EDG  CPVCLDD+ K D+VVACTTCRN
Sbjct: 128 VMAESLAEISLRRVFHQQFFQVKERTCVPIVDIEDGAACPVCLDDL-KDDRVVACTTCRN 187

Query: 194 LVHEDCFSRWKRSKGRSIVSCVVCRARWKDTRNQQKYLNLSAYVNEHGVIDNNLYD 248
           LVH+DCFSRWKRSKGR  +SCVVCRARWKDT N+QKYLNLSAY++EH  +DNN Y+
Sbjct: 188 LVHDDCFSRWKRSKGRRNISCVVCRARWKDTTNEQKYLNLSAYLDEHDAVDNNRYN 242

[Close]

BLAST of Sed0026395 vs. ExPASy TrEMBL
Match: A0A5A7VCN6 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G003720 PE=4 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 1.0e-97
Identity = 180/237 (75.95%), Postives = 203/237 (85.65%), Query Frame = 0


Query: 19  MESVASTSSPPDCPHVHLPQFEPF--VSARIARALQHDLRLLHHSDSSFFVLGATGNVYI 78
           MESVASTSSP       +P+F+P   V+ RI RAL H LRLLH S S+FFVLGATGNVYI
Sbjct: 1   MESVASTSSPRP-----VPRFKPSQPVADRIVRALHHHLRLLHRSGSNFFVLGATGNVYI 60

Query: 79  VSLSSTPSCTCPDRITPCKHILFIYIRALGVSLDDVCLRRRKLRPCQLNRLLVSPVRIES 138
           VSLSSTPSCTCPDRITPCKHILFIY++ALG+SLDDVCLRRR LRPCQLNRLL +P+ ++S
Sbjct: 61  VSLSSTPSCTCPDRITPCKHILFIYLQALGLSLDDVCLRRRTLRPCQLNRLLAAPIMLKS 120

Query: 139 LAEIGLRRVFHQQFSQVKERA------CVTVVDMEDGTTCPVCLDDMKKKDQVVACTTCR 198
           LAEIGLR+VFHQQF QV +RA      CVTV DMEDGT CPVCLDDMKK D+VVAC+TCR
Sbjct: 121 LAEIGLRKVFHQQFFQVNDRACSSSSSCVTVEDMEDGTACPVCLDDMKKNDRVVACSTCR 180

Query: 199 NLVHEDCFSRWKRSKGRSIVSCVVCRARWKDTRNQQKYLNLSAYVNEHGVIDNNLYD 248
           NLVHEDCF+RWKRSKGR  VSCVVCRARWKDT+++QKYLNLSAY+NEH  ID+NLY+
Sbjct: 181 NLVHEDCFTRWKRSKGRRNVSCVVCRARWKDTKDEQKYLNLSAYINEHDTIDDNLYN 232

[Close]

BLAST of Sed0026395 vs. ExPASy TrEMBL
Match: A0A1S4DW96 (uncharacterized protein LOC103488177 OS=Cucumis melo OX=3656 GN=LOC103488177 PE=4 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 1.0e-97
Identity = 180/237 (75.95%), Postives = 203/237 (85.65%), Query Frame = 0


Query: 19  MESVASTSSPPDCPHVHLPQFEPF--VSARIARALQHDLRLLHHSDSSFFVLGATGNVYI 78
           MESVASTSSP       +P+F+P   V+ RI RAL H LRLLH S S+FFVLGATGNVYI
Sbjct: 1   MESVASTSSPRP-----VPRFKPSQPVADRIVRALHHHLRLLHRSGSNFFVLGATGNVYI 60

Query: 79  VSLSSTPSCTCPDRITPCKHILFIYIRALGVSLDDVCLRRRKLRPCQLNRLLVSPVRIES 138
           VSLSSTPSCTCPDRITPCKHILFIY++ALG+SLDDVCLRRR LRPCQLNRLL +P+ ++S
Sbjct: 61  VSLSSTPSCTCPDRITPCKHILFIYLQALGLSLDDVCLRRRTLRPCQLNRLLAAPIMLKS 120

Query: 139 LAEIGLRRVFHQQFSQVKERA------CVTVVDMEDGTTCPVCLDDMKKKDQVVACTTCR 198
           LAEIGLR+VFHQQF QV +RA      CVTV DMEDGT CPVCLDDMKK D+VVAC+TCR
Sbjct: 121 LAEIGLRKVFHQQFFQVNDRACSSSSSCVTVEDMEDGTACPVCLDDMKKNDRVVACSTCR 180

Query: 199 NLVHEDCFSRWKRSKGRSIVSCVVCRARWKDTRNQQKYLNLSAYVNEHGVIDNNLYD 248
           NLVHEDCF+RWKRSKGR  VSCVVCRARWKDT+++QKYLNLSAY+NEH  ID+NLY+
Sbjct: 181 NLVHEDCFTRWKRSKGRRNVSCVVCRARWKDTKDEQKYLNLSAYINEHDTIDDNLYN 232

[Close]

BLAST of Sed0026395 vs. ExPASy TrEMBL
Match: A0A6J1BPZ4 (uncharacterized protein LOC111004703 OS=Momordica charantia OX=3673 GN=LOC111004703 PE=4 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.8e-94
Identity = 175/233 (75.11%), Postives = 199/233 (85.41%), Query Frame = 0


Query: 19  MESVASTSSPPDCPHVHLPQFEP--FVSARIARALQHDLRLLHHSDSSFFVLGATGNVYI 78
           MESVASTSSPP  P +HL +F+P   V+ RI RAL H LRLLH SDS+FFVLGATGNVYI
Sbjct: 27  MESVASTSSPPRRPRLHLTRFKPSQAVADRIVRALHHHLRLLHRSDSNFFVLGATGNVYI 86

Query: 79  VSLSSTPSCTCPDRITPCKHILFIYIRALGVSLDDVCLRRRKLRPCQLNRLLVSPVRIES 138
           VSLS+TPSC+CPDRITPCKHILFIYIRALGVSLDD CLRRR LRPC LNRLL +P+ +ES
Sbjct: 87  VSLSTTPSCSCPDRITPCKHILFIYIRALGVSLDDACLRRRTLRPCHLNRLLTAPIMLES 146

Query: 139 LAEIGLRRVFHQQFSQVKERACVTVVDMEDGTTCPVCLDDMKK--KDQVVACTTCRNLVH 198
           +A IG+RRVFHQ+F QVK RA  +VVD+EDGTTCPVCLD+MKK   D+VVAC TCRN+VH
Sbjct: 147 VAAIGVRRVFHQRFFQVKGRASASVVDVEDGTTCPVCLDEMKKDDSDRVVACMTCRNVVH 206

Query: 199 EDCFSRWKRSKGRSIVSCVVCRARWKDTRNQQKYLNLSAYVNEHGVIDNNLYD 248
           EDCF RWKRSKGR  VSCVVCRARW+DT  Q+KYLNLSAY+NE   I+N+LY+
Sbjct: 207 EDCFLRWKRSKGRRSVSCVVCRARWRDTSGQEKYLNLSAYINE---INNDLYN 256

[Close]

BLAST of Sed0026395 vs. ExPASy TrEMBL
Match: A0A0A0LS10 (SWIM-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G373540 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 2.6e-93
Identity = 179/240 (74.58%), Postives = 201/240 (83.75%), Query Frame = 0


Query: 19  MESVASTSSPPDCPHVHLPQFEPF--VSARIARALQHDLRLLHHSDSSFFVLGATGNVYI 78
           MESVASTSSP       +P+F+P   V+ RI RAL H LRLLH S S+FFVLGATGNVYI
Sbjct: 1   MESVASTSSPHS-----VPRFKPSQPVADRIVRALHHHLRLLHRSGSNFFVLGATGNVYI 60

Query: 79  VSLSSTPSCTCPDRITPCKHILFIYIRALGVSLDDVCLRRRKLRPCQLNRLLVSPVRIES 138
           VSLSSTPSCTCPDRITPCKHILFIY++ALG+SLDDVCLRRR LRPCQLNRLL +P+ ++S
Sbjct: 61  VSLSSTPSCTCPDRITPCKHILFIYLQALGLSLDDVCLRRRTLRPCQLNRLLAAPIMLKS 120

Query: 139 LAEIGLRRVFHQQFSQVKERAC-------VTVVDMEDGTTCPVCLDDMKKKDQVVACTTC 198
           LAEIGLR+VFHQQF QV +RA        VTV DMEDG+ CPVCLDDMKKKD+VVAC+TC
Sbjct: 121 LAEIGLRKVFHQQFFQVNDRAASSSSSSSVTVEDMEDGSACPVCLDDMKKKDRVVACSTC 180

Query: 199 RNLVHEDCFSRWKRSKGRSIVSCVVCRARWKDTRN-QQKYLNLSAY-VNEHGVIDNNLYD 248
           RNLVHEDCF+RWKRSKGR  VSCVVCRARWKDT++ QQKYLNLSAY +NEH  ID  LY+
Sbjct: 181 RNLVHEDCFTRWKRSKGRRNVSCVVCRARWKDTKDEQQKYLNLSAYIINEHDTIDATLYN 235

[Close]

BLAST of Sed0026395 vs. TAIR 10
Match: AT5G11620.1 (SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-related )

HSP 1 Score: 181.8 bits (460), Expect = 6.7e-46
Identity = 109/262 (41.60%), Postives = 144/262 (54.96%), Query Frame = 0


Query: 19  MESVASTSSPPDCPHVHLPQF--EPFVSARIARALQHDLRLLHHSDS-SFFVLGATGNVY 78
           MESV S    P   +     F  +P V+ RI RAL+H +RLLH  ++ +F VLGAT NVY
Sbjct: 1   MESVGSNQISPYVSNRDQRHFLAQP-VADRILRALRHRIRLLHRPNAGTFHVLGATCNVY 60

Query: 79  IVSLSSTPSCTCPDRITPCKHILFIYIRALGVSLDDVCLRRRKLRPCQLNRLLVSPVRIE 138
            V+L +TP+CTCPDR  PCKHILF+ IR LG+ LDD CLR+R+LR C L  L  +P R +
Sbjct: 61  TVTLMATPTCTCPDRKKPCKHILFVLIRVLGIPLDDKCLRQRRLRTCLLFHLFSAPTRPD 120

Query: 139 SLAEIGLRRVFHQQFSQVKERACVTV------------VDMEDGTTCPVCLDDM------ 198
            LA   L++ F Q F     +   T             VD E+  TCP+CLDD+      
Sbjct: 121 CLASFRLQQRFLQLFPATTSQPGYTTNSSSSTSKMENEVD-EEPATCPICLDDIIAIENV 180

Query: 199 --------KKKDQVVACTTCRNLVHEDCFSRWKRSKGRSIVSCVVCRARWKDTRNQQK-- 238
                   +K+  VV C  C+N VH++C   W++S+GR    CVVCRARW   R+ +   
Sbjct: 181 DGGNGGGKEKETAVVKCRVCKNKVHDECMLAWRKSRGRRPAICVVCRARWPANRSSKNPN 240

The following BLAST results are available for this feature:

BLAST of Sed0026395 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885291.1	3.5e-105	80.08	uncharacterized protein LOC120075728 [Benincasa hispida]	[more]
XP_022951525.1	3.6e-102	78.81	mitogen-activated protein kinase kinase kinase 1 [Cucurbita moschata]	[more]
KAG7020300.1	2.0e-100	78.88	Mitogen-activated protein kinase kinase kinase 1, partial [Cucurbita argyrosperm...	[more]
XP_023537388.1	1.3e-99	80.35	mitogen-activated protein kinase kinase kinase 1-like [Cucurbita pepo subsp. pep...	[more]
XP_016899980.1	2.1e-97	75.95	PREDICTED: uncharacterized protein LOC103488177 [Cucumis melo]	[more]

BLAST of Sed0026395 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0026395 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GJ16	1.8e-102	78.81	mitogen-activated protein kinase kinase kinase 1 OS=Cucurbita moschata OX=3662 G...	[more]
A0A5A7VCN6	1.0e-97	75.95	SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A1S4DW96	1.0e-97	75.95	uncharacterized protein LOC103488177 OS=Cucumis melo OX=3656 GN=LOC103488177 PE=...	[more]
A0A6J1BPZ4	1.8e-94	75.11	uncharacterized protein LOC111004703 OS=Momordica charantia OX=3673 GN=LOC111004...	[more]
A0A0A0LS10	2.6e-93	74.58	SWIM-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G373540 P...	[more]

BLAST of Sed0026395 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11620.1	6.7e-46	41.60	SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 156..234 e-value: 1.4E-10 score: 42.1
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 169..216 e-value: 2.6E-8 score: 34.1
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 170..216 score: 9.863244
IPR039903	E3 ubiquitin-protein ligase Zswim2	PANTHER	PTHR21540	RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 2	coord: 19..237
None	No IPR available	PANTHER	PTHR21540:SF4	SUBFAMILY NOT NAMED	coord: 19..237
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 162..231
IPR007527	Zinc finger, SWIM-type	PROSITE	PS50966	ZF_SWIM	coord: 75..105 score: 9.643522

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0026395.1	Sed0026395.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0016567	protein ubiquitination
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0061630	ubiquitin protein ligase activity
molecular_function	GO:0008270	zinc ion binding