Sed0026288 (gene) Chayote v1

Overview


Name	Sed0026288
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	LG10: 959200 .. 960000 (-)
RNA-Seq Expression	Sed0026288
Synteny	Sed0026288

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCTTCAACCATGGCTCTTTCCTCCCCATCTTTGGCCGGCCAGGCCATCAAGCTTTCCCCCAACTCCTCTGAGCTTCAGAGCAATGGAAGGGTCAGCATGAGGAAGACCGCCGGCAAGCCAGCTTCCTCCTCTGGCAGCCCATGGTACGGCCCCGACCGTGTCAAGTACTTGGGCCCATTCTCTGGCGAGGCACCGTCCTACCTGACTGGAGAATTCCCCGGCGACTACGGTTGGGACACCGCTGGACTTTCAGCCGATCCCGAGACCTTTGCCAAGAACCGTGAGCTTGAAGTGATCCACTCCAGATGGGCCATGCTTGGAGCCTTGGGCTGTGTCTTCCCCGAGCTGTTGTCCCGCAATGGCGTGAAGTTTGGTGAGGCTGTGTGGTTCAAGGCTGGCTCTCAGATCTTCAGCGAGGGAGGACTTGACTATTTGGGCAACTCGAGCTTGGTTCATGCTCAGAGCATTTTGGCCATCTGGGCTTGCCAGGTTGTGCTCATGGGTGCCGTCGAGGGCTACCGTATTGCTGGCGGTCCGCTCGGGGAGATCACCGACCCAATCTACCCAGGTGGAAGCTTCGACCCATTGGGTTTGGCTGATGACCCAGAGGCTTTTGCTGAGCTGAAGGTGAAGGAGCTAAAGAATGGAAGGCTGGCCATGTTCTCCATGTTTGGGTTCTTTGTTCAAGCTATTGTTACTGGAAAGGGTCCTTTGGAGAACTTGGCTGACCACCTTGCTGACCCAGTCAACAACAATGCTTGGTCCTATGCCACCAACTTTGTTCCTGGAAAGTGA

mRNA sequence

ATGGCTGCTTCAACCATGGCTCTTTCCTCCCCATCTTTGGCCGGCCAGGCCATCAAGCTTTCCCCCAACTCCTCTGAGCTTCAGAGCAATGGAAGGGTCAGCATGAGGAAGACCGCCGGCAAGCCAGCTTCCTCCTCTGGCAGCCCATGGTACGGCCCCGACCGTGTCAAGTACTTGGGCCCATTCTCTGGCGAGGCACCGTCCTACCTGACTGGAGAATTCCCCGGCGACTACGGTTGGGACACCGCTGGACTTTCAGCCGATCCCGAGACCTTTGCCAAGAACCGTGAGCTTGAAGTGATCCACTCCAGATGGGCCATGCTTGGAGCCTTGGGCTGTGTCTTCCCCGAGCTGTTGTCCCGCAATGGCGTGAAGTTTGGTGAGGCTGTGTGGTTCAAGGCTGGCTCTCAGATCTTCAGCGAGGGAGGACTTGACTATTTGGGCAACTCGAGCTTGGTTCATGCTCAGAGCATTTTGGCCATCTGGGCTTGCCAGGTTGTGCTCATGGGTGCCGTCGAGGGCTACCGTATTGCTGGCGGTCCGCTCGGGGAGATCACCGACCCAATCTACCCAGGTGGAAGCTTCGACCCATTGGGTTTGGCTGATGACCCAGAGGCTTTTGCTGAGCTGAAGGTGAAGGAGCTAAAGAATGGAAGGCTGGCCATGTTCTCCATGTTTGGGTTCTTTGTTCAAGCTATTGTTACTGGAAAGGGTCCTTTGGAGAACTTGGCTGACCACCTTGCTGACCCAGTCAACAACAATGCTTGGTCCTATGCCACCAACTTTGTTCCTGGAAAGTGA

Coding sequence (CDS)

ATGGCTGCTTCAACCATGGCTCTTTCCTCCCCATCTTTGGCCGGCCAGGCCATCAAGCTTTCCCCCAACTCCTCTGAGCTTCAGAGCAATGGAAGGGTCAGCATGAGGAAGACCGCCGGCAAGCCAGCTTCCTCCTCTGGCAGCCCATGGTACGGCCCCGACCGTGTCAAGTACTTGGGCCCATTCTCTGGCGAGGCACCGTCCTACCTGACTGGAGAATTCCCCGGCGACTACGGTTGGGACACCGCTGGACTTTCAGCCGATCCCGAGACCTTTGCCAAGAACCGTGAGCTTGAAGTGATCCACTCCAGATGGGCCATGCTTGGAGCCTTGGGCTGTGTCTTCCCCGAGCTGTTGTCCCGCAATGGCGTGAAGTTTGGTGAGGCTGTGTGGTTCAAGGCTGGCTCTCAGATCTTCAGCGAGGGAGGACTTGACTATTTGGGCAACTCGAGCTTGGTTCATGCTCAGAGCATTTTGGCCATCTGGGCTTGCCAGGTTGTGCTCATGGGTGCCGTCGAGGGCTACCGTATTGCTGGCGGTCCGCTCGGGGAGATCACCGACCCAATCTACCCAGGTGGAAGCTTCGACCCATTGGGTTTGGCTGATGACCCAGAGGCTTTTGCTGAGCTGAAGGTGAAGGAGCTAAAGAATGGAAGGCTGGCCATGTTCTCCATGTTTGGGTTCTTTGTTCAAGCTATTGTTACTGGAAAGGGTCCTTTGGAGAACTTGGCTGACCACCTTGCTGACCCAGTCAACAACAATGCTTGGTCCTATGCCACCAACTTTGTTCCTGGAAAGTGA

Protein sequence

MAASTMALSSPSLAGQAIKLSPNSSELQSNGRVSMRKTAGKPASSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNSSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK

Homology

[Close]

BLAST of Sed0026288 vs. NCBI nr
Match: XP_008456347.1 (PREDICTED: chlorophyll a-b binding protein of LHCII type 1 [Cucumis melo] >KAA0054604.1 chlorophyll a-b binding protein of LHCII type 1 [Cucumis melo var. makuwa] >TYK27568.1 chlorophyll a-b binding protein of LHCII type 1 [Cucumis melo var. makuwa])

HSP 1 Score: 512.7 bits (1319), Expect = 1.9e-141
Identity = 251/267 (94.01%), Postives = 258/267 (96.63%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGQAIKLSPNSSELQSNGRVSMRKTAGKPAS-SSGSPWYGPDRVKYL 60
           MAAS+MALSSPSLAGQA+KLSP +S+L   GR++MRKTAGKP   SSGSPWYGPDRVKYL
Sbjct: 1   MAASSMALSSPSLAGQAVKLSPTASDLLGEGRITMRKTAGKPKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNSSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           SRNGVKFGEAVWFKAGSQIFSEGGLDYLGN SLVHAQSILAIWACQVVLMGAVEGYRIAG
Sbjct: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWSYATNFVPGK 267
           LENLADHLADPVNNNAW+YATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of Sed0026288 vs. NCBI nr
Match: XP_008439658.1 (PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like [Cucumis melo] >KAA0052560.1 chlorophyll a-b binding protein of LHCII type 1-like [Cucumis melo var. makuwa] >TYK13266.1 chlorophyll a-b binding protein of LHCII type 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 512.3 bits (1318), Expect = 2.5e-141
Identity = 249/266 (93.61%), Postives = 258/266 (96.99%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGQAIKLSPNSSELQSNGRVSMRKTAGKPASSSGSPWYGPDRVKYLG 60
           MAASTMALSSPSLAG+A+KLSPN+ E+Q  GR++MRKTA KP  SSGSPWYGPDRVKYLG
Sbjct: 1   MAASTMALSSPSLAGKAVKLSPNAPEIQGTGRITMRKTATKPV-SSGSPWYGPDRVKYLG 60

Query: 61  PFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 120
           PFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS
Sbjct: 61  PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 120

Query: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNSSLVHAQSILAIWACQVVLMGAVEGYRIAGG 180
           RNGVKFGEAVWFKAGSQIFSEGGLDYLGN SLVHAQSILAIWACQVVLMGAVEGYRIAGG
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGG 180

Query: 181 PLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 240
           PLGE+TDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct: 181 PLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 240

Query: 241 ENLADHLADPVNNNAWSYATNFVPGK 267
           ENLADHL+DPVNNNAW+YATNFVPGK
Sbjct: 241 ENLADHLSDPVNNNAWAYATNFVPGK 265

[Close]

BLAST of Sed0026288 vs. NCBI nr
Match: XP_038901990.1 (chlorophyll a-b binding protein of LHCII type 1 [Benincasa hispida])

HSP 1 Score: 511.9 bits (1317), Expect = 3.3e-141
Identity = 250/267 (93.63%), Postives = 259/267 (97.00%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGQAIKLSPNSSELQSNGRVSMRKTAGKPAS-SSGSPWYGPDRVKYL 60
           MAAS+MALSSPSLAGQA+KLSP +S+L  +GR++MRKTAGKP   SSGSPWYGPDRVKYL
Sbjct: 1   MAASSMALSSPSLAGQAVKLSPTASDLLGDGRITMRKTAGKPKPISSGSPWYGPDRVKYL 60

Query: 61  GPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNSSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           SRNGVKFGEAVWFKAGSQIFSEGGLDYLGN SLVHAQSILAIWACQVVLMGAVEGYRIAG
Sbjct: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGEITDPIYPGGSFDPLGLADDP+AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEITDPIYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWSYATNFVPGK 267
           LENLADHLADPVNNNAW+YATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of Sed0026288 vs. NCBI nr
Match: XP_004145734.1 (chlorophyll a-b binding protein of LHCII type 1-like [Cucumis sativus] >KGN46826.1 hypothetical protein Csa_020847 [Cucumis sativus])

HSP 1 Score: 511.1 bits (1315), Expect = 5.6e-141
Identity = 250/267 (93.63%), Postives = 257/267 (96.25%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGQAIKLSPNSSELQSNGRVSMRKTAGKPAS-SSGSPWYGPDRVKYL 60
           MAAS+MALSSPS AGQA+KLSP +S+L   GR++MRKTAGKP   SSGSPWYGPDRVKYL
Sbjct: 1   MAASSMALSSPSFAGQAVKLSPTASDLLGEGRITMRKTAGKPKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNSSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           SRNGVKFGEAVWFKAGSQIFSEGGLDYLGN SLVHAQSILAIWACQVVLMGAVEGYRIAG
Sbjct: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWSYATNFVPGK 267
           LENLADHLADPVNNNAW+YATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of Sed0026288 vs. NCBI nr
Match: KAG6594489.1 (hypothetical protein SDJN03_11042, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 510.8 bits (1314), Expect = 7.3e-141
Identity = 251/266 (94.36%), Postives = 256/266 (96.24%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGQAIKLSPNSSELQSNGRVSMRKTAGKPASSSGSPWYGPDRVKYLG 60
           MAASTMALSSPSLAG AIKLSPN+ ++Q + R+SMRKTA K   SSGSPWYGPDRVKYLG
Sbjct: 1   MAASTMALSSPSLAGNAIKLSPNAPDIQGSSRISMRKTASKQV-SSGSPWYGPDRVKYLG 60

Query: 61  PFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 120
           PFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS
Sbjct: 61  PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 120

Query: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNSSLVHAQSILAIWACQVVLMGAVEGYRIAGG 180
           RNGVKFGEAVWFKAGSQIFSEGGLDYLGN SLVHAQSILAIWACQVVLMGAVEGYRIAGG
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGG 180

Query: 181 PLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 240
           PLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct: 181 PLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 240

Query: 241 ENLADHLADPVNNNAWSYATNFVPGK 267
           ENLADHLADPVNNNAWSYATNFVPGK
Sbjct: 241 ENLADHLADPVNNNAWSYATNFVPGK 265

[Close]

BLAST of Sed0026288 vs. ExPASy Swiss-Prot
Match: P27495 (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum OX=4097 GN=CAB40 PE=2 SV=1)

HSP 1 Score: 502.3 bits (1292), Expect = 3.4e-141
Identity = 242/267 (90.64%), Postives = 257/267 (96.25%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGQAIKLSPNSSELQSNGRVSMRKTAGKPAS-SSGSPWYGPDRVKYL 60
           MAASTMALSSPS AG+A+KLSP+SSE+  NG+V+MRKTA K  + SSGSPWYGPDRVKYL
Sbjct: 1   MAASTMALSSPSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKTVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGE+PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL
Sbjct: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNSSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           +RNGVKFGEAVWFKAGSQIFSEGGLDYLGN SLVHAQSILAIWACQVVLMGAVEGYR+AG
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGE+ DP+YPGGSFDPLGLA+DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWSYATNFVPGK 267
           LENLADHLADPVNNNAW+YATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of Sed0026288 vs. ExPASy Swiss-Prot
Match: P27493 (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum OX=4097 GN=CAB21 PE=2 SV=1)

HSP 1 Score: 501.1 bits (1289), Expect = 7.6e-141
Identity = 240/266 (90.23%), Postives = 255/266 (95.86%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGQAIKLSPNSSELQSNGRVSMRKTAGKPASSSGSPWYGPDRVKYLG 60
           MAA+TMALSSPS AGQA+KLSP++ E+  NGRVSMRKT  KP +SS SPWYGPDRVKYLG
Sbjct: 1   MAAATMALSSPSFAGQAVKLSPSAPEITGNGRVSMRKTVAKPVASS-SPWYGPDRVKYLG 60

Query: 61  PFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 120
           PFSGE+PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+
Sbjct: 61  PFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 120

Query: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNSSLVHAQSILAIWACQVVLMGAVEGYRIAGG 180
           RNGVKFGEAVWFKAGSQIFSEGGLDYLGN SLVHAQSILAIWACQV+LMGAVEGYR+AGG
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGG 180

Query: 181 PLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 240
           PLGE+ DP+YPGGSFDPLGLA+DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct: 181 PLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 240

Query: 241 ENLADHLADPVNNNAWSYATNFVPGK 267
           ENLADHLADPVNNNAW+YATNFVPGK
Sbjct: 241 ENLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of Sed0026288 vs. ExPASy Swiss-Prot
Match: P12333 (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1)

HSP 1 Score: 498.8 bits (1283), Expect = 3.8e-140
Identity = 239/267 (89.51%), Postives = 255/267 (95.51%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGQAIKLSPNSSELQSNGRVSMRKTAGKPAS-SSGSPWYGPDRVKYL 60
           MA+STMALSSPSLAG+A+KL P +SE+   GR++MRKTAGKP +  S SPWYGPDRVKYL
Sbjct: 1   MASSTMALSSPSLAGKAVKLGPTASEIIGEGRITMRKTAGKPKTVQSSSPWYGPDRVKYL 60

Query: 61  GPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGE+PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL
Sbjct: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNSSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           +RNGVKFGEAVWFKAGSQIFSEGGLDYLGN SLVHAQSILAIWACQV+LMGAVEGYRIAG
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAG 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGE+ DP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWSYATNFVPGK 267
           LENLADHLADPVNNNAW++ATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWNFATNFVPGK 267

[Close]

BLAST of Sed0026288 vs. ExPASy Swiss-Prot
Match: P07369 (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB3C PE=3 SV=1)

HSP 1 Score: 497.7 bits (1280), Expect = 8.4e-140
Identity = 243/268 (90.67%), Postives = 256/268 (95.52%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGQAIKLSPNSSELQSNGRVSMRKTA--GKPASSSGSPWYGPDRVKY 60
           MA STMALSS + AG+A+KLSP+SSE+  NGRV+MRKTA   KPA SSGSPWYGPDRVKY
Sbjct: 1   MATSTMALSSSTFAGKAVKLSPSSSEITGNGRVTMRKTATKAKPA-SSGSPWYGPDRVKY 60

Query: 61  LGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 120
           LGPFSGE+PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPEL
Sbjct: 61  LGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 120

Query: 121 LSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNSSLVHAQSILAIWACQVVLMGAVEGYRIA 180
           L+RNGVKFGEAVWFKAGSQIFSEGGLDYLGN SLVHAQSILAIWACQVVLMGAVEGYRIA
Sbjct: 121 LARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA 180

Query: 181 GGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 240
           GGPLGE+ DP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 181 GGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240

Query: 241 PLENLADHLADPVNNNAWSYATNFVPGK 267
           PLENLADHLADPVNNNAW++ATNFVPGK
Sbjct: 241 PLENLADHLADPVNNNAWAFATNFVPGK 267

[Close]

BLAST of Sed0026288 vs. ExPASy Swiss-Prot
Match: P07370 (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB1B PE=3 SV=1)

HSP 1 Score: 496.9 bits (1278), Expect = 1.4e-139
Identity = 239/266 (89.85%), Postives = 254/266 (95.49%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGQAIKLSPNSSELQSNGRVSMRKTAGKPASSSGSPWYGPDRVKYLG 60
           MAA+TMALSSPS AGQA+KLSP++SE+  NGR++MRK   K A SS SPWYGPDRVKYLG
Sbjct: 1   MAAATMALSSPSFAGQAVKLSPSASEISGNGRITMRKAVAKSAPSS-SPWYGPDRVKYLG 60

Query: 61  PFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 120
           PFSGE+PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+
Sbjct: 61  PFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA 120

Query: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNSSLVHAQSILAIWACQVVLMGAVEGYRIAGG 180
           RNGVKFGEAVWFKAGSQIFSEGGLDYLGN SLVHAQSILAIWACQVVLMGAVEGYRIAGG
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGG 180

Query: 181 PLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 240
           PLGE+ DP+YPGGSFDPLGLA+DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct: 181 PLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 240

Query: 241 ENLADHLADPVNNNAWSYATNFVPGK 267
           ENLADHLADPVNNNAW++ATNFVPGK
Sbjct: 241 ENLADHLADPVNNNAWAFATNFVPGK 265

[Close]

BLAST of Sed0026288 vs. ExPASy TrEMBL
Match: A0A5D3DVR3 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold22G00410 PE=3 SV=1)

HSP 1 Score: 512.7 bits (1319), Expect = 9.3e-142
Identity = 251/267 (94.01%), Postives = 258/267 (96.63%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGQAIKLSPNSSELQSNGRVSMRKTAGKPAS-SSGSPWYGPDRVKYL 60
           MAAS+MALSSPSLAGQA+KLSP +S+L   GR++MRKTAGKP   SSGSPWYGPDRVKYL
Sbjct: 1   MAASSMALSSPSLAGQAVKLSPTASDLLGEGRITMRKTAGKPKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNSSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           SRNGVKFGEAVWFKAGSQIFSEGGLDYLGN SLVHAQSILAIWACQVVLMGAVEGYRIAG
Sbjct: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWSYATNFVPGK 267
           LENLADHLADPVNNNAW+YATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of Sed0026288 vs. ExPASy TrEMBL
Match: A0A1S3C301 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103496313 PE=3 SV=1)

HSP 1 Score: 512.7 bits (1319), Expect = 9.3e-142
Identity = 251/267 (94.01%), Postives = 258/267 (96.63%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGQAIKLSPNSSELQSNGRVSMRKTAGKPAS-SSGSPWYGPDRVKYL 60
           MAAS+MALSSPSLAGQA+KLSP +S+L   GR++MRKTAGKP   SSGSPWYGPDRVKYL
Sbjct: 1   MAASSMALSSPSLAGQAVKLSPTASDLLGEGRITMRKTAGKPKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNSSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           SRNGVKFGEAVWFKAGSQIFSEGGLDYLGN SLVHAQSILAIWACQVVLMGAVEGYRIAG
Sbjct: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWSYATNFVPGK 267
           LENLADHLADPVNNNAW+YATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of Sed0026288 vs. ExPASy TrEMBL
Match: A0A5A7UBM9 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008840 PE=3 SV=1)

HSP 1 Score: 512.3 bits (1318), Expect = 1.2e-141
Identity = 249/266 (93.61%), Postives = 258/266 (96.99%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGQAIKLSPNSSELQSNGRVSMRKTAGKPASSSGSPWYGPDRVKYLG 60
           MAASTMALSSPSLAG+A+KLSPN+ E+Q  GR++MRKTA KP  SSGSPWYGPDRVKYLG
Sbjct: 1   MAASTMALSSPSLAGKAVKLSPNAPEIQGTGRITMRKTATKPV-SSGSPWYGPDRVKYLG 60

Query: 61  PFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 120
           PFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS
Sbjct: 61  PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 120

Query: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNSSLVHAQSILAIWACQVVLMGAVEGYRIAGG 180
           RNGVKFGEAVWFKAGSQIFSEGGLDYLGN SLVHAQSILAIWACQVVLMGAVEGYRIAGG
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGG 180

Query: 181 PLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 240
           PLGE+TDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct: 181 PLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 240

Query: 241 ENLADHLADPVNNNAWSYATNFVPGK 267
           ENLADHL+DPVNNNAW+YATNFVPGK
Sbjct: 241 ENLADHLSDPVNNNAWAYATNFVPGK 265

[Close]

BLAST of Sed0026288 vs. ExPASy TrEMBL
Match: A0A1S3AZW8 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484385 PE=3 SV=1)

HSP 1 Score: 512.3 bits (1318), Expect = 1.2e-141
Identity = 249/266 (93.61%), Postives = 258/266 (96.99%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGQAIKLSPNSSELQSNGRVSMRKTAGKPASSSGSPWYGPDRVKYLG 60
           MAASTMALSSPSLAG+A+KLSPN+ E+Q  GR++MRKTA KP  SSGSPWYGPDRVKYLG
Sbjct: 1   MAASTMALSSPSLAGKAVKLSPNAPEIQGTGRITMRKTATKPV-SSGSPWYGPDRVKYLG 60

Query: 61  PFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 120
           PFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS
Sbjct: 61  PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 120

Query: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNSSLVHAQSILAIWACQVVLMGAVEGYRIAGG 180
           RNGVKFGEAVWFKAGSQIFSEGGLDYLGN SLVHAQSILAIWACQVVLMGAVEGYRIAGG
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGG 180

Query: 181 PLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 240
           PLGE+TDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct: 181 PLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 240

Query: 241 ENLADHLADPVNNNAWSYATNFVPGK 267
           ENLADHL+DPVNNNAW+YATNFVPGK
Sbjct: 241 ENLADHLSDPVNNNAWAYATNFVPGK 265

[Close]

BLAST of Sed0026288 vs. ExPASy TrEMBL
Match: A0A0A0KGD7 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_6G139750 PE=3 SV=1)

HSP 1 Score: 511.1 bits (1315), Expect = 2.7e-141
Identity = 250/267 (93.63%), Postives = 257/267 (96.25%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGQAIKLSPNSSELQSNGRVSMRKTAGKPAS-SSGSPWYGPDRVKYL 60
           MAAS+MALSSPS AGQA+KLSP +S+L   GR++MRKTAGKP   SSGSPWYGPDRVKYL
Sbjct: 1   MAASSMALSSPSFAGQAVKLSPTASDLLGEGRITMRKTAGKPKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNSSLVHAQSILAIWACQVVLMGAVEGYRIAG 180
           SRNGVKFGEAVWFKAGSQIFSEGGLDYLGN SLVHAQSILAIWACQVVLMGAVEGYRIAG
Sbjct: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWSYATNFVPGK 267
           LENLADHLADPVNNNAW+YATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of Sed0026288 vs. TAIR 10
Match: AT1G29930.1 (chlorophyll A/B binding protein 1 )

HSP 1 Score: 480.3 bits (1235), Expect = 9.8e-136
Identity = 233/267 (87.27%), Postives = 250/267 (93.63%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGQAIKLSPNSSELQSNGRVSMRKTAGKPASSSGSPWYGPDRVKYLG 60
           MAASTMALSSP+ AG+A+KLSP +SE+  +GRV+MRKT  KP   SGSPWYG DRVKYLG
Sbjct: 1   MAASTMALSSPAFAGKAVKLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 60

Query: 61  PFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 120
           PFSGE+PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL+
Sbjct: 61  PFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 120

Query: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNSSLVHAQSILAIWACQVVLMGAVEGYRIAG- 180
           RNGVKFGEAVWFKAGSQIFS+GGLDYLGN SLVHAQSILAIWA QV+LMGAVEGYR+AG 
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGN 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGE  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWSYATNFVPGK 267
           +ENLADHLADPVNNNAW++ATNFVPGK
Sbjct: 241 IENLADHLADPVNNNAWAFATNFVPGK 267

[Close]

BLAST of Sed0026288 vs. TAIR 10
Match: AT1G29910.1 (chlorophyll A/B binding protein 3 )

HSP 1 Score: 478.4 bits (1230), Expect = 3.7e-135
Identity = 232/267 (86.89%), Postives = 249/267 (93.26%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGQAIKLSPNSSELQSNGRVSMRKTAGKPASSSGSPWYGPDRVKYLG 60
           MAASTMALSSP+ AG+A+ LSP +SE+  +GRV+MRKT  KP   SGSPWYG DRVKYLG
Sbjct: 1   MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 60

Query: 61  PFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 120
           PFSGE+PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL+
Sbjct: 61  PFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 120

Query: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNSSLVHAQSILAIWACQVVLMGAVEGYRIAG- 180
           RNGVKFGEAVWFKAGSQIFS+GGLDYLGN SLVHAQSILAIWA QV+LMGAVEGYR+AG 
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGN 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGE  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWSYATNFVPGK 267
           +ENLADHLADPVNNNAW++ATNFVPGK
Sbjct: 241 IENLADHLADPVNNNAWAFATNFVPGK 267

[Close]

BLAST of Sed0026288 vs. TAIR 10
Match: AT1G29920.1 (chlorophyll A/B-binding protein 2 )

HSP 1 Score: 478.4 bits (1230), Expect = 3.7e-135
Identity = 232/267 (86.89%), Postives = 249/267 (93.26%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGQAIKLSPNSSELQSNGRVSMRKTAGKPASSSGSPWYGPDRVKYLG 60
           MAASTMALSSP+ AG+A+ LSP +SE+  +GRV+MRKT  KP   SGSPWYG DRVKYLG
Sbjct: 1   MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 60

Query: 61  PFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 120
           PFSGE+PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL+
Sbjct: 61  PFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 120

Query: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNSSLVHAQSILAIWACQVVLMGAVEGYRIAG- 180
           RNGVKFGEAVWFKAGSQIFS+GGLDYLGN SLVHAQSILAIWA QV+LMGAVEGYR+AG 
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGN 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGE  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWSYATNFVPGK 267
           +ENLADHLADPVNNNAW++ATNFVPGK
Sbjct: 241 IENLADHLADPVNNNAWAFATNFVPGK 267

[Close]

BLAST of Sed0026288 vs. TAIR 10
Match: AT2G34430.1 (light-harvesting chlorophyll-protein complex II subunit B1 )

HSP 1 Score: 474.2 bits (1219), Expect = 7.0e-134
Identity = 233/267 (87.27%), Postives = 248/267 (92.88%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGQAIKLSPNSSELQSNGRVSMRKTAGKPASSSGSPWYGPDRVKYLG 60
           MAASTMALSSP+L G+A+KLSP +SE+   GR++MRK A KP   SGSPWYG DRVKYLG
Sbjct: 1   MAASTMALSSPALTGKAVKLSPAASEVFGTGRITMRK-ASKPTGPSGSPWYGSDRVKYLG 60

Query: 61  PFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 120
           PFSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL+
Sbjct: 61  PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 120

Query: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNSSLVHAQSILAIWACQVVLMGAVEGYRIAG- 180
           RNGVKFGEAVWFKAGSQIFS+GGLDYLGN SLVHAQSILAIWA QV+LMGAVEGYR+AG 
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGD 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGE  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWSYATNFVPGK 267
           LENLADHLADPVNNNAW++ATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWAFATNFVPGK 266

[Close]

BLAST of Sed0026288 vs. TAIR 10
Match: AT2G34420.1 (photosystem II light harvesting complex gene B1B2 )

HSP 1 Score: 469.9 bits (1208), Expect = 1.3e-132
Identity = 230/267 (86.14%), Postives = 247/267 (92.51%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGQAIKLSPNSSELQSNGRVSMRKTAGKPASSSGSPWYGPDRVKYLG 60
           MA+STMALSSP+ AG+A+K  P +S++  +GRV+MRKT  KP   SGSPWYG DRVKYLG
Sbjct: 1   MASSTMALSSPAFAGKAVK--PAASDVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 60

Query: 61  PFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 120
           PFSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL+
Sbjct: 61  PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 120

Query: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNSSLVHAQSILAIWACQVVLMGAVEGYRIAG- 180
           RNGVKFGEAVWFKAGSQIFS+GGLDYLGN SLVHAQSILAIWA QV+LMGAVEGYR+AG 
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGD 180

Query: 181 GPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGE  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWSYATNFVPGK 267
           LENLADHLADPVNNNAW++ATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWAFATNFVPGK 265

The following BLAST results are available for this feature:

BLAST of Sed0026288 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456347.1	1.9e-141	94.01	PREDICTED: chlorophyll a-b binding protein of LHCII type 1 [Cucumis melo] >KAA00...	[more]
XP_008439658.1	2.5e-141	93.61	PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like [Cucumis melo] >...	[more]
XP_038901990.1	3.3e-141	93.63	chlorophyll a-b binding protein of LHCII type 1 [Benincasa hispida]	[more]
XP_004145734.1	5.6e-141	93.63	chlorophyll a-b binding protein of LHCII type 1-like [Cucumis sativus] >KGN46826...	[more]
KAG6594489.1	7.3e-141	94.36	hypothetical protein SDJN03_11042, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Sed0026288 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27495	3.4e-141	90.64	Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum OX=4097 G...	[more]
P27493	7.6e-141	90.23	Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum OX=4097 G...	[more]
P12333	3.8e-140	89.51	Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1...	[more]
P07369	8.4e-140	90.67	Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum OX=408...	[more]
P07370	1.4e-139	89.85	Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum OX=408...	[more]

BLAST of Sed0026288 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DVR3	9.3e-142	94.01	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3C301	9.3e-142	94.01	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A5A7UBM9	1.2e-141	93.61	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3AZW8	1.2e-141	93.61	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A0A0KGD7	2.7e-141	93.63	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]

BLAST of Sed0026288 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29930.1	9.8e-136	87.27	chlorophyll A/B binding protein 1	[more]
AT1G29910.1	3.7e-135	86.89	chlorophyll A/B binding protein 3	[more]
AT1G29920.1	3.7e-135	86.89	chlorophyll A/B-binding protein 2	[more]
AT2G34430.1	7.0e-134	87.27	light-harvesting chlorophyll-protein complex II subunit B1	[more]
AT2G34420.1	1.3e-132	86.14	photosystem II light harvesting complex gene B1B2	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 66..232 e-value: 1.4E-49 score: 168.7
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 57..259 e-value: 3.6E-90 score: 303.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..45
None	No IPR available	PANTHER	PTHR21649:SF88	CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC	coord: 1..266
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 49..263
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..266

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0026288.1	Sed0026288.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding