Sed0026286 (gene) Chayote v1

Overview


Name	Sed0026286
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Peptide deformylase
Location	LG05: 28284035 .. 28288200 (+)
RNA-Seq Expression	Sed0026286
Synteny	Sed0026286

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGGGAGTTGAAGCCCAATCCAATATCACACGGCCTTAAACCCTCTCAGAAACTCCCGTCGCCGGAGGTTGCGGCTGCGAAATGGAGGCCATTCACCGATTCTCACTTTGTCTCTTCCCAATCTCCATCGCCAAAAATCATCTCAAGCTTTCTTCCGCCACACCCAAGTTTCGAAATCTCATTTACAAACCCACTTCTTCATCGAATCACATTCCCAACTTCATTCCGGCCCGGAAAACGTACCGTTCAATTGCGAAGGCCGGTTGGTTTCTGGGCCTTGGAGAGAACAAGAAGAAGGCGAGCTTTCCCACGATTGTTGAGGCCGGAGACCCAGTTCTTCACGAGCCTGCCCGTGAAGTTGATCCTCAGGAAATTGGGTCGGAGAAGATTCAGAACATAATCCACGATATGGTTCTTGCCATGAGGAAGGCTCCTGGGATTGGTCTTGCGGCTCCCCAGATTGGCATTCCTTTAAGGGTTCGTCAAAATTTCTTGTTGGGGTCTAAATTTTACTCGTTCTTTTTGTTATCTGTTTGTTGTGTGAGATGGAAATGTGAGATTTGGTTGCTGAGATGGTGCTTTGTTTCTTTATTTTCTTGTTTTTAGGTTCATGGGTTTGCTCATTGTGAAATTGTTGAATCATATTGTTGGAGTAAATTTAATTATATTAATCAATACTTTCCCTCGGACATGCCCTTTATTTGGAATTTAATTTTATTTGGGTAGGAAATAATTTGGTGAGGATTTTCTCTTATACTATGTTGAAACTTGTTAACTTACCGATCAGTCCAAAAGCAATCATCATGGAGTGAACTAGTCGTCAAAAAGGTGTTGGGGGAACTAAGATATTGTGGGTTTAGTGGTTACTTCTTGACATCCGAATGTTGTAGGGTTAGTGACTCGAACATTCACAGATGTTAAAAAAAAAAAACCAATCAACTCAAAAACTTAGGCTCCATTTGATAACCATTTTTTTTTTGTTTATGAAATTTAAGCCTATTTCCATTCAAATTTCCTACCATGTGCTCCATCTTTCCTACAATATATCCATCTTTCCTTAAGAAAGTAGGAGAATACTAACCAAATTTAAAAAACATAAACAAGTTTTTGGAAGCTACTTTTTTTTGTTTACAAATTTTGGTTTTGTTTATTAAAATATAGGTAAGATGTGGGTATCCAAATAAAGAAAAATGTATAGTAAGGTAGTTGTTGTAGGTTAAAATTTCATAAACAAAAAACGAAAAACAAAATGGTTATCAAACGGGGCCTTAAAGTGATGGTTGGGGTGAGTTTAATTTATAAACCAGCATAAATGTTATTGAAAAACCTTGGAGTTGCATTCATATGCAGTGTTTTATCCTACATTGTTACAGATAATTGTTCTGGAAGACACTGAAGAATATATCAGTTATGCACCCAAGGAGGAGATCAAAGCACAAGATAGGCGTCCTTTTGATCTTTTGGTATGGTTATATACTTACTCATGAGAAAGCTAATTAATCTTGTGCCTGTGTTTTTTGTGTTCACCAATTTTCATTTCACAGTTTGTTAGTTCTATTGAGCCAGGTAATCATAAACCCAAAGCTAAATAGTAAAAGCAACAAGAGTGCACTGTTTTTTGAAGGGTGTCTAAGGTAAGATGCATACATTCAATTTTCTTTTTCTTTTTCTCTTTTCCCTCATAAATCTACTTTTTTTAGGTTTGTGGTGGGAATGCCTTTGGATTGAATTTTTGTATTTAGGCTCCTGGTGGCCTCGCATAGGGACGGGCGTGGTTGCCTGAGTATAGTGGCTCAAACCTCCCGTTTCCCAGTTTCAAAAAAAAAAGTGTATTAAGAGTATATTTGTAATCAGTTAGGGATGTGTGTGATGGAAAAGATGAAGACAAATAACTTTTTAAGGTCCCGTTTGATAACCATTTGGTTTTTGAAATTTAAGCATGTAACAACTATCTTACCATATGTTTTTTCTTACTTGGATATCTATATGTCACCTATATTTCTAGAAACCAAACCAAATTTAGAAACATAAAAAAGTAGTTTCCAAAAGCTTGTTTCTGGTTTTTTTTTTATATGCGTGACTGTCCGGGCCAACTTGCACGCACCTCGACTAATTTGCGAAATATACTGTCTGACCTTACAACATTTGGATGTCAAGGAAACTCGTAGGAAATTAATTCCTAGGTAGGTGCTCTCCATGGATTGAACTCATCCCCTTAAGCACCCCAAGACCCTCTTTGATCACTTGAGCCACTCCTTGAAAGTTGGTTATTATTCGCATACTTTCTTAAGGAAAGATGGATACATTGTAGGAAAGGTGGAACACATTGTAGAAAATTTGAGTAAGAATAGACTTTATTTTCAAAATCCAAAAACAAAAAACCAAATGATAATCAAATAAGGCTTAAATGTTTAGTTTTGAGTGTGAGAGTGCTCAAGGGCGGGAAGGTTCCATGTATTTCGAATATTTGAGTTATCTGGTGTATATTTAATTTAATGTTCTTCTGGTTTTGTTTTGGTTCTATTAGTTTGCGATCTCTTTATTGCCTTTCCCTTATTCTTCATGGTATGCTCACAAGTCCCAACTTGCTTATTAGTGGGATGACAATGTGTTGAATTATGTTAAACCACCAATCAATCCAAAAGTCAAGCTGATGGATTGGGGCAAATTTAATTATATCAACCAACACTTCCCCTCACTTGTGAGCTTTGAAATTTGAGAAATGCCCTACAAATGAAATTTAATTTTAATTGGGGAGGAAATAGCGTGGAAGAGATTTGAACTCATGACCTCATGCTCTGATACCATGTTGAATTATGTTAAACCAACACTCCCCCTCACTTGTGGGCTTTGAAATTTGAGAAATGCCCTTCAAGTGGAATTTAATTTTAATTGGGGAGGAAATAACGTGGCAGAGATTCGAACTTATGACCTCATGCTCTGATACTATGTTGAATTATGTTAAACTACCAATCAATCCAAAAGTCTAAGCTGATGGATTGAGGCAAATTTAATTATATCAACCAACCCAATGAATGAACTTCCAAATCCAATTTCAAAAGTAAAAGCTTTATCATTTAAGGCTGTCATTTTTCTCAAGACTCATGTTCTTTCTCTTTATTCTAGAAAATATGTATAGCATGTGGAATCCATATGTTTCTGTATACATGTTTCATCCTACGATAAAAGTGATGCCATGATGATGTTGATTCTTTAGACTTTGGAATTATATTTGGTGAGAAGTATCAACTCTTGCTCTTTCCAAAGTTTTCTTTTAACAGATTGTTTCTGGTTGAGGCTATGTATGAAGTGCATTATTCACTATCAGGGCTGATGTTTGCTCAAGGATTTTGTCATCTGCTTGTGTATATTATTCCTAATCCTAGCTATTCATGATTTCTTCCTTCATTCTTTTACCTTGTAGTGTGGATGGATTTAGGGCAGTTGTGGAGCGCCATCTTGATGTTGAGGTAGTCGGTCTCGATCGATATGGTAATTCTATTAAGGTGGATGCTTCGGGTTGGCAGGCTCGAATTTTGCAGCACGAATGTGATCATTTGGATGGAACTCTTTATGTGGACAAGATGGTTCCTCGAACATTCAGAACAGCTAAAAATTTGACCTTGCCTCTTGCTGAGGGTTGCCCCAAGCTCGGAGCTTGCTAGCTTCAGCCGGCACTGTTGGCTCCGAGTTCGTTAACATTTGATGTGAAGATTATCTCAGTTCGGAAAATAGGGAAAAAGGGGATTCAAAGCATTGGAATTTAACTGGATTTTTCATTTAACTGCTTACACTGCATTCAAGTAAGTGTTTGAAACAATTTTGGACCTTGAACCTCGTATAAGAATTTTCATATTTGATTCTAAACTGAATTTGCATGGTTTGAAACAAAGTTCCAGAGATGTCATGTAAGATTTCGTTTAAAACCCAGTACAAGAAGTATAGGATTTCATGACCAAAACAAAACATATAGAAGCATAGGTATCAAAACAAAACAAAATCTTAGAATACCACTCAAAAAATACCAAACAAGAAATAGTGTTGGCATTGAAGGGATTGCATTTTGCTGCTCTCATTTTAGCTCATGCCATGTCAGTAGGTTTTTCTTTAGACATTTCACTGTCATACAAAATGTTGGTGGGCTGAGCGGTTTTGTTGATAGAGG

mRNA sequence

TTTGGGAGTTGAAGCCCAATCCAATATCACACGGCCTTAAACCCTCTCAGAAACTCCCGTCGCCGGAGGTTGCGGCTGCGAAATGGAGGCCATTCACCGATTCTCACTTTGTCTCTTCCCAATCTCCATCGCCAAAAATCATCTCAAGCTTTCTTCCGCCACACCCAAGTTTCGAAATCTCATTTACAAACCCACTTCTTCATCGAATCACATTCCCAACTTCATTCCGGCCCGGAAAACGTACCGTTCAATTGCGAAGGCCGGTTGGTTTCTGGGCCTTGGAGAGAACAAGAAGAAGGCGAGCTTTCCCACGATTGTTGAGGCCGGAGACCCAGTTCTTCACGAGCCTGCCCGTGAAGTTGATCCTCAGGAAATTGGGTCGGAGAAGATTCAGAACATAATCCACGATATGGTTCTTGCCATGAGGAAGGCTCCTGGGATTGGTCTTGCGGCTCCCCAGATTGGCATTCCTTTAAGGATAATTGTTCTGGAAGACACTGAAGAATATATCAGTTATGCACCCAAGGAGGAGATCAAAGCACAAGATAGGCGTCCTTTTGATCTTTTGGTAATCATAAACCCAAAGCTAAATAGTAAAAGCAACAAGAGTGCACTGTTTTTTGAAGGGTGTCTAAGTGTGGATGGATTTAGGGCAGTTGTGGAGCGCCATCTTGATGTTGAGGTAGTCGGTCTCGATCGATATGGTAATTCTATTAAGGTGGATGCTTCGGGTTGGCAGGCTCGAATTTTGCAGCACGAATGTGATCATTTGGATGGAACTCTTTATGTGGACAAGATGGTTCCTCGAACATTCAGAACAGCTAAAAATTTGACCTTGCCTCTTGCTGAGGGTTGCCCCAAGCTCGGAGCTTGCTAGCTTCAGCCGGCACTGTTGGCTCCGAGTTCGTTAACATTTGATGTGAAGATTATCTCAGTTCGGAAAATAGGGAAAAAGGGGATTCAAAGCATTGGAATTTAACTGGATTTTTCATTTAACTGCTTACACTGCATTCAAGTAAGTGTTTGAAACAATTTTGGACCTTGAACCTCGTATAAGAATTTTCATATTTGATTCTAAACTGAATTTGCATGGTTTGAAACAAAGTTCCAGAGATGTCATGTAAGATTTCGTTTAAAACCCAGTACAAGAAGTATAGGATTTCATGACCAAAACAAAACATATAGAAGCATAGGTATCAAAACAAAACAAAATCTTAGAATACCACTCAAAAAATACCAAACAAGAAATAGTGTTGGCATTGAAGGGATTGCATTTTGCTGCTCTCATTTTAGCTCATGCCATGTCAGTAGGTTTTTCTTTAGACATTTCACTGTCATACAAAATGTTGGTGGGCTGAGCGGTTTTGTTGATAGAGG

Coding sequence (CDS)

ATGGAGGCCATTCACCGATTCTCACTTTGTCTCTTCCCAATCTCCATCGCCAAAAATCATCTCAAGCTTTCTTCCGCCACACCCAAGTTTCGAAATCTCATTTACAAACCCACTTCTTCATCGAATCACATTCCCAACTTCATTCCGGCCCGGAAAACGTACCGTTCAATTGCGAAGGCCGGTTGGTTTCTGGGCCTTGGAGAGAACAAGAAGAAGGCGAGCTTTCCCACGATTGTTGAGGCCGGAGACCCAGTTCTTCACGAGCCTGCCCGTGAAGTTGATCCTCAGGAAATTGGGTCGGAGAAGATTCAGAACATAATCCACGATATGGTTCTTGCCATGAGGAAGGCTCCTGGGATTGGTCTTGCGGCTCCCCAGATTGGCATTCCTTTAAGGATAATTGTTCTGGAAGACACTGAAGAATATATCAGTTATGCACCCAAGGAGGAGATCAAAGCACAAGATAGGCGTCCTTTTGATCTTTTGGTAATCATAAACCCAAAGCTAAATAGTAAAAGCAACAAGAGTGCACTGTTTTTTGAAGGGTGTCTAAGTGTGGATGGATTTAGGGCAGTTGTGGAGCGCCATCTTGATGTTGAGGTAGTCGGTCTCGATCGATATGGTAATTCTATTAAGGTGGATGCTTCGGGTTGGCAGGCTCGAATTTTGCAGCACGAATGTGATCATTTGGATGGAACTCTTTATGTGGACAAGATGGTTCCTCGAACATTCAGAACAGCTAAAAATTTGACCTTGCCTCTTGCTGAGGGTTGCCCCAAGCTCGGAGCTTGCTAG

Protein sequence

MEAIHRFSLCLFPISIAKNHLKLSSATPKFRNLIYKPTSSSNHIPNFIPARKTYRSIAKAGWFLGLGENKKKASFPTIVEAGDPVLHEPAREVDPQEIGSEKIQNIIHDMVLAMRKAPGIGLAAPQIGIPLRIIVLEDTEEYISYAPKEEIKAQDRRPFDLLVIINPKLNSKSNKSALFFEGCLSVDGFRAVVERHLDVEVVGLDRYGNSIKVDASGWQARILQHECDHLDGTLYVDKMVPRTFRTAKNLTLPLAEGCPKLGAC

Homology

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BLAST of Sed0026286 vs. NCBI nr
Match: XP_022998920.1 (peptide deformylase 1A, chloroplastic [Cucurbita maxima])

HSP 1 Score: 450.7 bits (1158), Expect = 8.9e-123
Identity = 225/268 (83.96%), Postives = 239/268 (89.18%), Query Frame = 0


Query: 1   MEAIHRFSLCLFPISIAKNHLKLSSATPKFRNLIYKPTSSSNHIPNFIPARKTYRS---- 60
           ME +HRFS  L P S+A+  LK SSATP+FRNLI  PTSSSNHIP FIPARK+Y S    
Sbjct: 1   METVHRFSFRLLPFSLAERCLKPSSATPRFRNLICGPTSSSNHIPKFIPARKSYSSSFSP 60

Query: 61  IAKAGWFLGLGENKKKASFPTIVEAGDPVLHEPAREVDPQEIGSEKIQNIIHDMVLAMRK 120
           IAKAGWFLGLG+ K K S P IV AGDPVLHEPAREVDP+EIGS+KIQ II DMV+AMR 
Sbjct: 61  IAKAGWFLGLGD-KNKTSLPKIVNAGDPVLHEPAREVDPKEIGSDKIQKIIDDMVVAMRN 120

Query: 121 APGIGLAAPQIGIPLRIIVLEDTEEYISYAPKEEIKAQDRRPFDLLVIINPKLNSKSNKS 180
           APG+GLAA QIGIPLRIIVLEDT+EYISYAPKEEIKAQDRRPFDLLVIINPKL SKSNK+
Sbjct: 121 APGVGLAATQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRPFDLLVIINPKLKSKSNKT 180

Query: 181 ALFFEGCLSVDGFRAVVERHLDVEVVGLDRYGNSIKVDASGWQARILQHECDHLDGTLYV 240
           ALFFEGCLSVDGFRAVVERHLDVEVVGLDRYGN IKVDASGWQARILQHECDHL+GTLYV
Sbjct: 181 ALFFEGCLSVDGFRAVVERHLDVEVVGLDRYGNHIKVDASGWQARILQHECDHLEGTLYV 240

Query: 241 DKMVPRTFRTAKNLTLPLAEGCPKLGAC 265
           DKMVPRTFRTA+NLTLPLAEGCPKLG C
Sbjct: 241 DKMVPRTFRTAENLTLPLAEGCPKLGVC 267

[Close]

BLAST of Sed0026286 vs. NCBI nr
Match: XP_022948341.1 (peptide deformylase 1A, chloroplastic [Cucurbita moschata])

HSP 1 Score: 444.5 bits (1142), Expect = 6.4e-121
Identity = 222/266 (83.46%), Postives = 238/266 (89.47%), Query Frame = 0


Query: 1   MEAIHRFSLCLFPISIAKNHLKLSSATPKFRNLIYKPTSSSNHIPNFIPARKTYRS---- 60
           ME +HRFS  L P S+A+  LK SSATP+FRNLI  PTSSSNHIP FIPARK+Y S    
Sbjct: 1   METVHRFSFRLLPFSLAERCLKPSSATPRFRNLICGPTSSSNHIPKFIPARKSYSSSFSP 60

Query: 61  IAKAGWFLGLGENKKKASFPTIVEAGDPVLHEPAREVDPQEIGSEKIQNIIHDMVLAMRK 120
           IAKAGWFLGLG+ K K S P IV AGDPVLHEPAREVDP+EIGS+KIQ II DMV+AMR 
Sbjct: 61  IAKAGWFLGLGD-KNKTSLPKIVNAGDPVLHEPAREVDPKEIGSDKIQKIIDDMVVAMRN 120

Query: 121 APGIGLAAPQIGIPLRIIVLEDTEEYISYAPKEEIKAQDRRPFDLLVIINPKLNSKSNKS 180
           APG+GLAA QIGIPLRIIVLEDT+EYISYAPKEEIKAQDRRPFDLLVIINPKL SKSNK+
Sbjct: 121 APGVGLAATQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRPFDLLVIINPKLKSKSNKT 180

Query: 181 ALFFEGCLSVDGFRAVVERHLDVEVVGLDRYGNSIKVDASGWQARILQHECDHLDGTLYV 240
           ALFFEGCLSVDGFRAVVERHLDVEVVGLDRYG+ IKVDASGWQARILQHECDHL+GTLYV
Sbjct: 181 ALFFEGCLSVDGFRAVVERHLDVEVVGLDRYGSRIKVDASGWQARILQHECDHLEGTLYV 240

Query: 241 DKMVPRTFRTAKNLTLPLAEGCPKLG 263
           DKMVPRTFRTA+NLTLPLAEGCP+LG
Sbjct: 241 DKMVPRTFRTAENLTLPLAEGCPRLG 265

[Close]

BLAST of Sed0026286 vs. NCBI nr
Match: XP_023524625.1 (peptide deformylase 1A, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 443.7 bits (1140), Expect = 1.1e-120
Identity = 222/266 (83.46%), Postives = 237/266 (89.10%), Query Frame = 0


Query: 1   MEAIHRFSLCLFPISIAKNHLKLSSATPKFRNLIYKPTSSSNHIPNFIPARKTYRS---- 60
           ME +HRFS  L P S+A+  LK SSATP+FRNLI  PTSSSNHIP  IPARK+Y S    
Sbjct: 1   METVHRFSFRLLPFSLAERCLKPSSATPRFRNLICGPTSSSNHIPKLIPARKSYSSSFSP 60

Query: 61  IAKAGWFLGLGENKKKASFPTIVEAGDPVLHEPAREVDPQEIGSEKIQNIIHDMVLAMRK 120
           IAKAGWFLGLG+ K K S P IV AGDPVLHEPAREVDP+EIGS+KIQ II DMV+AMR 
Sbjct: 61  IAKAGWFLGLGD-KNKTSLPKIVNAGDPVLHEPAREVDPKEIGSDKIQKIIDDMVVAMRN 120

Query: 121 APGIGLAAPQIGIPLRIIVLEDTEEYISYAPKEEIKAQDRRPFDLLVIINPKLNSKSNKS 180
           APG+GLAA QIGIPLRIIVLEDT+EYISYAPKEEIKAQDRRPFDLLVIINPKL SKSNK+
Sbjct: 121 APGVGLAATQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRPFDLLVIINPKLKSKSNKT 180

Query: 181 ALFFEGCLSVDGFRAVVERHLDVEVVGLDRYGNSIKVDASGWQARILQHECDHLDGTLYV 240
           ALFFEGCLSVDGFRAVVERHLDVEVVGLDRYG+ IKVDASGWQARILQHECDHLDGTLYV
Sbjct: 181 ALFFEGCLSVDGFRAVVERHLDVEVVGLDRYGSRIKVDASGWQARILQHECDHLDGTLYV 240

Query: 241 DKMVPRTFRTAKNLTLPLAEGCPKLG 263
           DKMVPRTFRTA+NLTLPLAEGCP+LG
Sbjct: 241 DKMVPRTFRTAENLTLPLAEGCPRLG 265

[Close]

BLAST of Sed0026286 vs. NCBI nr
Match: KAG6606790.1 (Peptide deformylase 1A, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 442.6 bits (1137), Expect = 2.4e-120
Identity = 221/266 (83.08%), Postives = 237/266 (89.10%), Query Frame = 0


Query: 1   MEAIHRFSLCLFPISIAKNHLKLSSATPKFRNLIYKPTSSSNHIPNFIPARKTYRS---- 60
           ME +HRFS  L P S+A+  LK SSATP+FRNLI  PTSSSNHIP FIPARK+Y S    
Sbjct: 1   METVHRFSFRLLPFSLAERCLKPSSATPRFRNLICGPTSSSNHIPKFIPARKSYSSSFSP 60

Query: 61  IAKAGWFLGLGENKKKASFPTIVEAGDPVLHEPAREVDPQEIGSEKIQNIIHDMVLAMRK 120
           IAKAGWFLGLG+ K K S P IV AGDPVLHEPAREVDP+EIGS+KIQ II DMV+AMR 
Sbjct: 61  IAKAGWFLGLGD-KNKTSLPKIVNAGDPVLHEPAREVDPKEIGSDKIQKIIDDMVVAMRN 120

Query: 121 APGIGLAAPQIGIPLRIIVLEDTEEYISYAPKEEIKAQDRRPFDLLVIINPKLNSKSNKS 180
           APG+GLAA QIGIPLRIIVLEDT+EYISYAPKEEIKAQDRRPFDLLVIINPKL SKSN +
Sbjct: 121 APGVGLAATQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRPFDLLVIINPKLKSKSNNT 180

Query: 181 ALFFEGCLSVDGFRAVVERHLDVEVVGLDRYGNSIKVDASGWQARILQHECDHLDGTLYV 240
           ALFFEGCLSVDGFRAVVERHLDVEVVGLDRYG+ IKVDASGWQARILQHECDHL+GTLYV
Sbjct: 181 ALFFEGCLSVDGFRAVVERHLDVEVVGLDRYGSRIKVDASGWQARILQHECDHLEGTLYV 240

Query: 241 DKMVPRTFRTAKNLTLPLAEGCPKLG 263
           DKMVPRTFRTA+NLTLPLAEGCP+LG
Sbjct: 241 DKMVPRTFRTAENLTLPLAEGCPRLG 265

[Close]

BLAST of Sed0026286 vs. NCBI nr
Match: KAG7036502.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 442.6 bits (1137), Expect = 2.4e-120
Identity = 221/266 (83.08%), Postives = 237/266 (89.10%), Query Frame = 0


Query: 1   MEAIHRFSLCLFPISIAKNHLKLSSATPKFRNLIYKPTSSSNHIPNFIPARKTYRS---- 60
           ME +HRFS  L P S+A+  LK SSATP+FRNLI  PTSSSNHIP FIPARK+Y S    
Sbjct: 371 METVHRFSFRLLPFSLAERCLKPSSATPRFRNLICGPTSSSNHIPKFIPARKSYSSSFSP 430

Query: 61  IAKAGWFLGLGENKKKASFPTIVEAGDPVLHEPAREVDPQEIGSEKIQNIIHDMVLAMRK 120
           IAKAGWFLGLG+ K K S P IV AGDPVLHEPAREVDP+EIGS+KIQ II DMV+AMR 
Sbjct: 431 IAKAGWFLGLGD-KNKTSLPKIVNAGDPVLHEPAREVDPKEIGSDKIQKIIDDMVVAMRN 490

Query: 121 APGIGLAAPQIGIPLRIIVLEDTEEYISYAPKEEIKAQDRRPFDLLVIINPKLNSKSNKS 180
           APG+GLAA QIGIPLRIIVLEDT+EYISYAPKEEIKAQDRRPFDLLVIINPKL SKSN +
Sbjct: 491 APGVGLAATQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRPFDLLVIINPKLKSKSNNT 550

Query: 181 ALFFEGCLSVDGFRAVVERHLDVEVVGLDRYGNSIKVDASGWQARILQHECDHLDGTLYV 240
           ALFFEGCLSVDGFRAVVERHLDVEVVGLDRYG+ IKVDASGWQARILQHECDHL+GTLYV
Sbjct: 551 ALFFEGCLSVDGFRAVVERHLDVEVVGLDRYGSRIKVDASGWQARILQHECDHLEGTLYV 610

Query: 241 DKMVPRTFRTAKNLTLPLAEGCPKLG 263
           DKMVPRTFRTA+NLTLPLAEGCP+LG
Sbjct: 611 DKMVPRTFRTAENLTLPLAEGCPRLG 635

[Close]

BLAST of Sed0026286 vs. ExPASy Swiss-Prot
Match: Q9FUZ0 (Peptide deformylase 1A, chloroplastic OS=Solanum lycopersicum OX=4081 GN=PDF1A PE=2 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 3.4e-93
Identity = 167/216 (77.31%), Postives = 186/216 (86.11%), Query Frame = 0


Query: 50  ARKTYRS-IAKAGWFLGLGENKKKASFPTIVEAGDPVLHEPAREVDPQEIGSEKIQNIIH 109
           ++K Y S  A+AGWFLGLGE KKK + P IV+AGDPVLHEP++++  +EIGSE+IQ II 
Sbjct: 63  SKKNYSSATARAGWFLGLGE-KKKQAMPDIVKAGDPVLHEPSQDIPLEEIGSERIQKIIE 122

Query: 110 DMVLAMRKAPGIGLAAPQIGIPLRIIVLEDTEEYISYAPKEEIKAQDRRPFDLLVIINPK 169
           +MV  MR APG+GLAAPQIGIPL+IIVLEDT EYISYAPK+E KAQDRRPF LLVIINPK
Sbjct: 123 EMVKVMRNAPGVGLAAPQIGIPLKIIVLEDTNEYISYAPKDETKAQDRRPFGLLVIINPK 182

Query: 170 LNSKSNKSALFFEGCLSVDGFRAVVERHLDVEVVGLDRYGNSIKVDASGWQARILQHECD 229
           L  K NK+ALFFEGCLSVDGFRAVVERHL+VEV GLDR G +IKVDASGWQARILQHE D
Sbjct: 183 LKKKGNKTALFFEGCLSVDGFRAVVERHLEVEVTGLDRNGKAIKVDASGWQARILQHEYD 242

Query: 230 HLDGTLYVDKMVPRTFRTAKNLTLPLAEGCPKLGAC 265
           HLDGTLYVDKM PRTFRT +NL LPLA GCPKLG C
Sbjct: 243 HLDGTLYVDKMAPRTFRTVENLDLPLAAGCPKLGVC 277

[Close]

BLAST of Sed0026286 vs. ExPASy Swiss-Prot
Match: Q9FV53 (Peptide deformylase 1A, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PDF1A PE=1 SV=3)

HSP 1 Score: 338.2 bits (866), Expect = 8.4e-92
Identity = 174/269 (64.68%), Postives = 199/269 (73.98%), Query Frame = 0


Query: 1   MEAIHRFSLCLFPISIAK--NHLKLSSATPKFRNLIYK-----PTSSSNHIPNFIPARKT 60
           ME + R SL L P+S A     ++   + P   +L+ +     PTSSS+ +         
Sbjct: 11  METLFRVSLRLLPVSAAVTCRSIRFPVSRPGSSHLLNRKLYNLPTSSSSSLS-------- 70

Query: 61  YRSIAKAGWFLGLGENKKKASFPTIVEAGDPVLHEPAREVDPQEIGSEKIQNIIHDMVLA 120
                KAGW LGLGE KKK   P IV +GDPVLHE AREVDP EIGSE+IQ II DM+  
Sbjct: 71  ----TKAGWLLGLGEKKKKVDLPEIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKV 130

Query: 121 MRKAPGIGLAAPQIGIPLRIIVLEDTEEYISYAPKEEIKAQDRRPFDLLVIINPKLNSKS 180
           MR APG+GLAAPQIG+PLRIIVLEDT+EYISYAPKEEI AQ+RR FDL+V++NP L  +S
Sbjct: 131 MRLAPGVGLAAPQIGVPLRIIVLEDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERS 190

Query: 181 NKSALFFEGCLSVDGFRAVVERHLDVEVVGLDRYGNSIKVDASGWQARILQHECDHLDGT 240
           NK ALFFEGCLSVDGFRA VER+L+V V G DR G  I+V+ASGWQARILQHECDHLDG 
Sbjct: 191 NKKALFFEGCLSVDGFRAAVERYLEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGN 250

Query: 241 LYVDKMVPRTFRTAKNLTLPLAEGCPKLG 263
           LYVDKMVPRTFRT  NL LPLAEGCPKLG
Sbjct: 251 LYVDKMVPRTFRTVDNLDLPLAEGCPKLG 267

[Close]

BLAST of Sed0026286 vs. ExPASy Swiss-Prot
Match: B6RGY0 (Peptide deformylase 1A, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PDF1A PE=2 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 1.3e-81
Identity = 161/264 (60.98%), Postives = 189/264 (71.59%), Query Frame = 0


Query: 11  LFPISIAKNHLKLSSATPKFRNLIYKPTSSSNHIPNFIPARKTYRSIAKA----GWFLGL 70
           L P+S A   L LS A P        PT+ +       P  + + S+  +    GW  GL
Sbjct: 5   LRPLSAAA--LLLSPAAP-------LPTAVAASARRASPGGRRWSSVRASAGGGGWLSGL 64

Query: 71  GENKKKASFPT-------IVEAGDPVLHEPAREVDPQEIGSEKIQNIIHDMVLAMRKAPG 130
              K     PT        V+AGDPVLHEPA++V P +I SEK+Q +I  MV  MRKAPG
Sbjct: 65  LGGKGGGGAPTAMTVTPGTVKAGDPVLHEPAQDVAPGDIPSEKVQGVIDRMVAVMRKAPG 124

Query: 131 IGLAAPQIGIPLRIIVLEDTEEYISYAPKEEIKAQDRRPFDLLVIINPKLNSKSNKSALF 190
           +GLAAPQIG+PL+IIVLEDT+EYISYAPK++I+AQDRRPFDLLVIINPKL + S ++ALF
Sbjct: 125 VGLAAPQIGVPLKIIVLEDTQEYISYAPKKDIEAQDRRPFDLLVIINPKLKTTSKRTALF 184

Query: 191 FEGCLSVDGFRAVVERHLDVEVVGLDRYGNSIKVDASGWQARILQHECDHLDGTLYVDKM 250
           FEGCLSVDG+RA+VERHLDVEV GLDR G  IKV+ASGWQARILQHECDHL+GTLYVD M
Sbjct: 185 FEGCLSVDGYRALVERHLDVEVSGLDRNGRPIKVEASGWQARILQHECDHLEGTLYVDTM 244

Query: 251 VPRTFRTAKNLTLPLAEGCPKLGA 264
           VPRTFR   NL LPL  GCP +GA
Sbjct: 245 VPRTFRIVDNLDLPLPVGCPPIGA 259

[Close]

BLAST of Sed0026286 vs. ExPASy Swiss-Prot
Match: Q7NJV3 (Peptide deformylase 1 OS=Gloeobacter violaceus (strain ATCC 29082 / PCC 7421) OX=251221 GN=def1 PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.1e-38
Identity = 80/172 (46.51%), Postives = 112/172 (65.12%), Query Frame = 0


Query: 78  IVEAGDPVLHEPAREVDPQEIGSEKIQNIIHDMVLAMRKAPGIGLAAPQIGIPLRIIVLE 137
           IV+ GDPVL   A+ ++  EI SE IQ +I  M   MR+APG+GLAAPQ+G+ ++++V+E
Sbjct: 48  IVKTGDPVLRLTAKPLNSDEIQSEAIQQLIAAMAERMREAPGVGLAAPQVGVSVQLVVIE 107

Query: 138 DTEEYISYAPKEEIKAQDRRPFDLLVIINPKLNSKSNKSALFFEGCLSVDGFRAVVERHL 197
           D  EYI      E + ++R P    V+INP L+ +  +SA+FFEGCLS+ G++ +V R  
Sbjct: 108 DRPEYIERLSGAERREREREPVPFHVLINPVLSVEGEESAVFFEGCLSIPGYQGLVARAR 167

Query: 198 DVEVVGLDRYGNSIKVDASGWQARILQHECDHLDGTLYVDKMVPRTFRTAKN 250
            V V  LD     + + A GW ARILQHE DHL+G L VD+M  +TF T +N
Sbjct: 168 VVRVEALDERAAPVVIRAHGWYARILQHEIDHLNGLLCVDRMDLQTFSTLEN 219

[Close]

BLAST of Sed0026286 vs. ExPASy Swiss-Prot
Match: Q825U9 (Peptide deformylase 3 OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680) OX=227882 GN=def3 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.5e-32
Identity = 75/186 (40.32%), Postives = 108/186 (58.06%), Query Frame = 0


Query: 78  IVEAGDPVLHEPAREVDPQEIGSEKIQNIIHDMVLAMRKAPGIGLAAPQIGIPLRIIVLE 137
           IV AGDPVL   A   D Q +G   +   +  + L M  APG+GLAAPQ+G+ LRI V+E
Sbjct: 35  IVAAGDPVLRRGAEPYDGQ-LGPGLLARFVEALRLTMHAAPGVGLAAPQVGVGLRIAVIE 94

Query: 138 DTEEYISYAPKEEIKAQDRRPFDLLVIINPKLNSKSNKSALFFEGCLSVDGFRAVVERHL 197
           D     +  P+E    + R P    V++NP   +  +  A FFEGCLSV G++AVV R  
Sbjct: 95  DP----APVPEEVGAVRGRVPQPFRVLVNPSYEAVGSDRAAFFEGCLSVPGWQAVVARPA 154

Query: 198 DVEVVGLDRYGNSIKVDASGWQARILQHECDHLDGTLYVDKMVPRTFRTAKNLTLPLAEG 257
            V +  LD +G ++  + +GW ARI+QHE DHLDG LY+D+   R+  + + + L  ++ 
Sbjct: 155 RVRLTALDEHGRAVDEEFTGWPARIVQHETDHLDGMLYLDRAELRSLSSNEAMALRWSQP 214

Query: 258 CPKLGA 264
            P+  A
Sbjct: 215 TPERAA 215

[Close]

BLAST of Sed0026286 vs. ExPASy TrEMBL
Match: A0A6J1KDU7 (Peptide deformylase OS=Cucurbita maxima OX=3661 GN=LOC111493439 PE=3 SV=1)

HSP 1 Score: 450.7 bits (1158), Expect = 4.3e-123
Identity = 225/268 (83.96%), Postives = 239/268 (89.18%), Query Frame = 0


Query: 1   MEAIHRFSLCLFPISIAKNHLKLSSATPKFRNLIYKPTSSSNHIPNFIPARKTYRS---- 60
           ME +HRFS  L P S+A+  LK SSATP+FRNLI  PTSSSNHIP FIPARK+Y S    
Sbjct: 1   METVHRFSFRLLPFSLAERCLKPSSATPRFRNLICGPTSSSNHIPKFIPARKSYSSSFSP 60

Query: 61  IAKAGWFLGLGENKKKASFPTIVEAGDPVLHEPAREVDPQEIGSEKIQNIIHDMVLAMRK 120
           IAKAGWFLGLG+ K K S P IV AGDPVLHEPAREVDP+EIGS+KIQ II DMV+AMR 
Sbjct: 61  IAKAGWFLGLGD-KNKTSLPKIVNAGDPVLHEPAREVDPKEIGSDKIQKIIDDMVVAMRN 120

Query: 121 APGIGLAAPQIGIPLRIIVLEDTEEYISYAPKEEIKAQDRRPFDLLVIINPKLNSKSNKS 180
           APG+GLAA QIGIPLRIIVLEDT+EYISYAPKEEIKAQDRRPFDLLVIINPKL SKSNK+
Sbjct: 121 APGVGLAATQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRPFDLLVIINPKLKSKSNKT 180

Query: 181 ALFFEGCLSVDGFRAVVERHLDVEVVGLDRYGNSIKVDASGWQARILQHECDHLDGTLYV 240
           ALFFEGCLSVDGFRAVVERHLDVEVVGLDRYGN IKVDASGWQARILQHECDHL+GTLYV
Sbjct: 181 ALFFEGCLSVDGFRAVVERHLDVEVVGLDRYGNHIKVDASGWQARILQHECDHLEGTLYV 240

Query: 241 DKMVPRTFRTAKNLTLPLAEGCPKLGAC 265
           DKMVPRTFRTA+NLTLPLAEGCPKLG C
Sbjct: 241 DKMVPRTFRTAENLTLPLAEGCPKLGVC 267

[Close]

BLAST of Sed0026286 vs. ExPASy TrEMBL
Match: A0A6J1G8Z1 (Peptide deformylase OS=Cucurbita moschata OX=3662 GN=LOC111452048 PE=3 SV=1)

HSP 1 Score: 444.5 bits (1142), Expect = 3.1e-121
Identity = 222/266 (83.46%), Postives = 238/266 (89.47%), Query Frame = 0


Query: 1   MEAIHRFSLCLFPISIAKNHLKLSSATPKFRNLIYKPTSSSNHIPNFIPARKTYRS---- 60
           ME +HRFS  L P S+A+  LK SSATP+FRNLI  PTSSSNHIP FIPARK+Y S    
Sbjct: 1   METVHRFSFRLLPFSLAERCLKPSSATPRFRNLICGPTSSSNHIPKFIPARKSYSSSFSP 60

Query: 61  IAKAGWFLGLGENKKKASFPTIVEAGDPVLHEPAREVDPQEIGSEKIQNIIHDMVLAMRK 120
           IAKAGWFLGLG+ K K S P IV AGDPVLHEPAREVDP+EIGS+KIQ II DMV+AMR 
Sbjct: 61  IAKAGWFLGLGD-KNKTSLPKIVNAGDPVLHEPAREVDPKEIGSDKIQKIIDDMVVAMRN 120

Query: 121 APGIGLAAPQIGIPLRIIVLEDTEEYISYAPKEEIKAQDRRPFDLLVIINPKLNSKSNKS 180
           APG+GLAA QIGIPLRIIVLEDT+EYISYAPKEEIKAQDRRPFDLLVIINPKL SKSNK+
Sbjct: 121 APGVGLAATQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRPFDLLVIINPKLKSKSNKT 180

Query: 181 ALFFEGCLSVDGFRAVVERHLDVEVVGLDRYGNSIKVDASGWQARILQHECDHLDGTLYV 240
           ALFFEGCLSVDGFRAVVERHLDVEVVGLDRYG+ IKVDASGWQARILQHECDHL+GTLYV
Sbjct: 181 ALFFEGCLSVDGFRAVVERHLDVEVVGLDRYGSRIKVDASGWQARILQHECDHLEGTLYV 240

Query: 241 DKMVPRTFRTAKNLTLPLAEGCPKLG 263
           DKMVPRTFRTA+NLTLPLAEGCP+LG
Sbjct: 241 DKMVPRTFRTAENLTLPLAEGCPRLG 265

[Close]

BLAST of Sed0026286 vs. ExPASy TrEMBL
Match: A0A6J1DL13 (Peptide deformylase OS=Momordica charantia OX=3673 GN=LOC111021042 PE=3 SV=1)

HSP 1 Score: 434.5 bits (1116), Expect = 3.2e-118
Identity = 221/269 (82.16%), Postives = 237/269 (88.10%), Query Frame = 0


Query: 1   MEAIHRFSLCLFPISIAKNHLKLSSATPKFRNLIYKPTSSSNH--IPNFIPARKTY---- 60
           M+ IHRFS  LFPIS+A   L  SSATPKF  L ++PTSS +   IP F+P R+TY    
Sbjct: 1   MDTIHRFSFRLFPISLAHCCLNPSSATPKFPKLFHRPTSSFDFDCIPKFVPPRQTYSSSS 60

Query: 61  RSIAKAGWFLGLGENKKKASFPTIVEAGDPVLHEPAREVDPQEIGSEKIQNIIHDMVLAM 120
            SIAKAGWFLGLGE +KK S PTIV+AGDPVLHEPAREVDP+EIGSEKIQ II DMVLAM
Sbjct: 61  TSIAKAGWFLGLGE-QKKMSLPTIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLAM 120

Query: 121 RKAPGIGLAAPQIGIPLRIIVLEDTEEYISYAPKEEIKAQDRRPFDLLVIINPKLNSKSN 180
           RKAPG+GLAAPQIGIPLRIIVLEDT+EYISYAPKEEIKAQDRRPFDLLVI+NPKL  KSN
Sbjct: 121 RKAPGVGLAAPQIGIPLRIIVLEDTQEYISYAPKEEIKAQDRRPFDLLVIVNPKLKCKSN 180

Query: 181 KSALFFEGCLSVDGFRAVVERHLDVEVVGLDRYGNSIKVDASGWQARILQHECDHLDGTL 240
           K+ALFFEGCLSVDGFRAVVERHLDVEVVGLDR GN IKVDASGWQARILQHECDHLDGTL
Sbjct: 181 KTALFFEGCLSVDGFRAVVERHLDVEVVGLDRDGNPIKVDASGWQARILQHECDHLDGTL 240

Query: 241 YVDKMVPRTFRTAKNLTLPLAEGCPKLGA 264
           YVDKM+PRTFR A+NLTLPLAEGCPKLGA
Sbjct: 241 YVDKMLPRTFRMAENLTLPLAEGCPKLGA 268

[Close]

BLAST of Sed0026286 vs. ExPASy TrEMBL
Match: A0A1S3BY63 (Peptide deformylase OS=Cucumis melo OX=3656 GN=LOC103494711 PE=3 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 7.1e-118
Identity = 219/266 (82.33%), Postives = 234/266 (87.97%), Query Frame = 0


Query: 1   MEAIHRFSLCLFPISIAKNHLKLSSATPKFRNLIYKPTSSSNHIPNFIPARKTY----RS 60
           MEAIHRFS  LFPIS+A+   K S   P FR LI++  SSS +IP FIPA KTY     S
Sbjct: 1   MEAIHRFSFRLFPISLAERCRKPSLLAPNFRKLIHRTISSSPNIPKFIPAXKTYSSSSTS 60

Query: 61  IAKAGWFLGLGENKKKASFPTIVEAGDPVLHEPAREVDPQEIGSEKIQNIIHDMVLAMRK 120
           IAKAGWFLGLGE +KK S P+IV+AGDPVLHEPAREVDP+EIGSEKIQ II DMVL MRK
Sbjct: 61  IAKAGWFLGLGE-QKKMSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRK 120

Query: 121 APGIGLAAPQIGIPLRIIVLEDTEEYISYAPKEEIKAQDRRPFDLLVIINPKLNSKSNKS 180
           APG+GLAAPQIGIPLRIIVLEDT+EYISYAPKEEIKAQDRRPFDLLVIINPKL SKSNK+
Sbjct: 121 APGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRPFDLLVIINPKLKSKSNKT 180

Query: 181 ALFFEGCLSVDGFRAVVERHLDVEVVGLDRYGNSIKVDASGWQARILQHECDHLDGTLYV 240
           ALFFEGCLSVDGFRAVVER+LDVE+ G DR GN IKVDASGWQARILQHECDHLDGTLYV
Sbjct: 181 ALFFEGCLSVDGFRAVVERYLDVEIAGFDRNGNPIKVDASGWQARILQHECDHLDGTLYV 240

Query: 241 DKMVPRTFRTAKNLTLPLAEGCPKLG 263
           DKMVPRTFRTA+NLTLPLAEGCPKLG
Sbjct: 241 DKMVPRTFRTAENLTLPLAEGCPKLG 265

[Close]

BLAST of Sed0026286 vs. ExPASy TrEMBL
Match: A0A5D3E1C7 (Peptide deformylase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001640 PE=3 SV=1)

HSP 1 Score: 433.0 bits (1112), Expect = 9.3e-118
Identity = 219/266 (82.33%), Postives = 234/266 (87.97%), Query Frame = 0


Query: 1   MEAIHRFSLCLFPISIAKNHLKLSSATPKFRNLIYKPTSSSNHIPNFIPARKTY----RS 60
           MEAIHRFS  LFPIS+A+   K S   P FR LI++  SSS +IP FIPA KTY     S
Sbjct: 1   MEAIHRFSFRLFPISLAERCRKPSLLAPNFRKLIHRTISSSPNIPKFIPAPKTYSSSSTS 60

Query: 61  IAKAGWFLGLGENKKKASFPTIVEAGDPVLHEPAREVDPQEIGSEKIQNIIHDMVLAMRK 120
           IAKAGWFLGLGE +KK S P+IV+AGDPVLHEPAREVDP+EIGSEKIQ II DMVL MRK
Sbjct: 61  IAKAGWFLGLGE-QKKMSLPSIVKAGDPVLHEPAREVDPKEIGSEKIQKIIDDMVLTMRK 120

Query: 121 APGIGLAAPQIGIPLRIIVLEDTEEYISYAPKEEIKAQDRRPFDLLVIINPKLNSKSNKS 180
           APG+GLAAPQIGIPLRIIVLEDT+EYISYAPKEEIKAQDRRPFDLLVIINPKL SKSNK+
Sbjct: 121 APGVGLAAPQIGIPLRIIVLEDTKEYISYAPKEEIKAQDRRPFDLLVIINPKLKSKSNKT 180

Query: 181 ALFFEGCLSVDGFRAVVERHLDVEVVGLDRYGNSIKVDASGWQARILQHECDHLDGTLYV 240
           ALFFEGCLSVDGFRAVVER+LDVE+ G DR GN IKVDASGWQARILQHECDHLDGTLYV
Sbjct: 181 ALFFEGCLSVDGFRAVVERYLDVEIAGFDRNGNPIKVDASGWQARILQHECDHLDGTLYV 240

Query: 241 DKMVPRTFRTAKNLTLPLAEGCPKLG 263
           DKMVPRTFRTA+NLTLPLAEGCPKLG
Sbjct: 241 DKMVPRTFRTAENLTLPLAEGCPKLG 265

[Close]

BLAST of Sed0026286 vs. TAIR 10
Match: AT1G15390.1 (peptide deformylase 1A )

HSP 1 Score: 338.2 bits (866), Expect = 6.0e-93
Identity = 174/269 (64.68%), Postives = 199/269 (73.98%), Query Frame = 0


Query: 1   MEAIHRFSLCLFPISIAK--NHLKLSSATPKFRNLIYK-----PTSSSNHIPNFIPARKT 60
           ME + R SL L P+S A     ++   + P   +L+ +     PTSSS+ +         
Sbjct: 11  METLFRVSLRLLPVSAAVTCRSIRFPVSRPGSSHLLNRKLYNLPTSSSSSLS-------- 70

Query: 61  YRSIAKAGWFLGLGENKKKASFPTIVEAGDPVLHEPAREVDPQEIGSEKIQNIIHDMVLA 120
                KAGW LGLGE KKK   P IV +GDPVLHE AREVDP EIGSE+IQ II DM+  
Sbjct: 71  ----TKAGWLLGLGEKKKKVDLPEIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKV 130

Query: 121 MRKAPGIGLAAPQIGIPLRIIVLEDTEEYISYAPKEEIKAQDRRPFDLLVIINPKLNSKS 180
           MR APG+GLAAPQIG+PLRIIVLEDT+EYISYAPKEEI AQ+RR FDL+V++NP L  +S
Sbjct: 131 MRLAPGVGLAAPQIGVPLRIIVLEDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERS 190

Query: 181 NKSALFFEGCLSVDGFRAVVERHLDVEVVGLDRYGNSIKVDASGWQARILQHECDHLDGT 240
           NK ALFFEGCLSVDGFRA VER+L+V V G DR G  I+V+ASGWQARILQHECDHLDG 
Sbjct: 191 NKKALFFEGCLSVDGFRAAVERYLEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGN 250

Query: 241 LYVDKMVPRTFRTAKNLTLPLAEGCPKLG 263
           LYVDKMVPRTFRT  NL LPLAEGCPKLG
Sbjct: 251 LYVDKMVPRTFRTVDNLDLPLAEGCPKLG 267

[Close]

BLAST of Sed0026286 vs. TAIR 10
Match: AT5G14660.1 (peptide deformylase 1B )

HSP 1 Score: 97.1 bits (240), Expect = 2.3e-20
Identity = 58/162 (35.80%), Postives = 84/162 (51.85%), Query Frame = 0


Query: 78  IVEAGDPVLHEPAREVDPQEIGSEKIQNIIHDMVLAMRKAPGIGLAAPQIGIPLRIIVLE 137
           IVE  DP+L    + +D   I  E ++N++  M   M K  GIGL+APQ+G+ ++++V  
Sbjct: 83  IVEYPDPILRAKNKRID---IFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFN 142

Query: 138 DTEEYISYAPKEEIKAQDRRPFDLLVIINPKLNSKSNKSALFFEGCLSVDGFRAVVERHL 197
              E     P E  +         +V++NPK+   S+K   F EGCLS  G  A V R  
Sbjct: 143 PAGE-----PGEGKE---------IVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQ 202

Query: 198 DVEVVGLDRYGNSIKVDASGWQARILQHECDHLDGTLYVDKM 240
            V++   D  G    +  S   ARI QHE DHL+G L+ D+M
Sbjct: 203 SVKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRM 227

[Close]

BLAST of Sed0026286 vs. TAIR 10
Match: AT5G14660.2 (peptide deformylase 1B )

HSP 1 Score: 97.1 bits (240), Expect = 2.3e-20
Identity = 58/162 (35.80%), Postives = 84/162 (51.85%), Query Frame = 0


Query: 78  IVEAGDPVLHEPAREVDPQEIGSEKIQNIIHDMVLAMRKAPGIGLAAPQIGIPLRIIVLE 137
           IVE  DP+L    + +D   I  E ++N++  M   M K  GIGL+APQ+G+ ++++V  
Sbjct: 83  IVEYPDPILRAKNKRID---IFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFN 142

Query: 138 DTEEYISYAPKEEIKAQDRRPFDLLVIINPKLNSKSNKSALFFEGCLSVDGFRAVVERHL 197
              E     P E  +         +V++NPK+   S+K   F EGCLS  G  A V R  
Sbjct: 143 PAGE-----PGEGKE---------IVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQ 202

Query: 198 DVEVVGLDRYGNSIKVDASGWQARILQHECDHLDGTLYVDKM 240
            V++   D  G    +  S   ARI QHE DHL+G L+ D+M
Sbjct: 203 SVKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRM 227

The following BLAST results are available for this feature:

BLAST of Sed0026286 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022998920.1	8.9e-123	83.96	peptide deformylase 1A, chloroplastic [Cucurbita maxima]	[more]
XP_022948341.1	6.4e-121	83.46	peptide deformylase 1A, chloroplastic [Cucurbita moschata]	[more]
XP_023524625.1	1.1e-120	83.46	peptide deformylase 1A, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo]	[more]
KAG6606790.1	2.4e-120	83.08	Peptide deformylase 1A, chloroplastic, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG7036502.1	2.4e-120	83.08	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]

BLAST of Sed0026286 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FUZ0	3.4e-93	77.31	Peptide deformylase 1A, chloroplastic OS=Solanum lycopersicum OX=4081 GN=PDF1A P...	[more]
Q9FV53	8.4e-92	64.68	Peptide deformylase 1A, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3...	[more]
B6RGY0	1.3e-81	60.98	Peptide deformylase 1A, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
Q7NJV3	1.1e-38	46.51	Peptide deformylase 1 OS=Gloeobacter violaceus (strain ATCC 29082 / PCC 7421) OX...	[more]
Q825U9	1.5e-32	40.32	Peptide deformylase 3 OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492...	[more]

BLAST of Sed0026286 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KDU7	4.3e-123	83.96	Peptide deformylase OS=Cucurbita maxima OX=3661 GN=LOC111493439 PE=3 SV=1	[more]
A0A6J1G8Z1	3.1e-121	83.46	Peptide deformylase OS=Cucurbita moschata OX=3662 GN=LOC111452048 PE=3 SV=1	[more]
A0A6J1DL13	3.2e-118	82.16	Peptide deformylase OS=Momordica charantia OX=3673 GN=LOC111021042 PE=3 SV=1	[more]
A0A1S3BY63	7.1e-118	82.33	Peptide deformylase OS=Cucumis melo OX=3656 GN=LOC103494711 PE=3 SV=1	[more]
A0A5D3E1C7	9.3e-118	82.33	Peptide deformylase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G...	[more]

BLAST of Sed0026286 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15390.1	6.0e-93	64.68	peptide deformylase 1A	[more]
AT5G14660.1	2.3e-20	35.80	peptide deformylase 1B	[more]
AT5G14660.2	2.3e-20	35.80	peptide deformylase 1B	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023635	Peptide deformylase	PRINTS	PR01576	PDEFORMYLASE	coord: 108..137 score: 45.74 coord: 193..211 score: 33.33 coord: 181..192 score: 58.95 coord: 212..241 score: 45.74
IPR023635	Peptide deformylase	TIGRFAM	TIGR00079	TIGR00079	coord: 78..243 e-value: 3.1E-35 score: 119.1
IPR023635	Peptide deformylase	PFAM	PF01327	Pep_deformylase	coord: 77..242 e-value: 1.1E-47 score: 161.6
IPR023635	Peptide deformylase	PANTHER	PTHR10458	PEPTIDE DEFORMYLASE	coord: 1..263
IPR023635	Peptide deformylase	HAMAP	MF_00163	Pep_deformylase	coord: 74..250 score: 26.385427
IPR023635	Peptide deformylase	CDD	cd00487	Pep_deformylase	coord: 78..235 e-value: 1.2025E-62 score: 191.545
IPR036821	Peptide deformylase superfamily	GENE3D	3.90.45.10	Peptide deformylase	coord: 75..263 e-value: 3.5E-66 score: 223.9
IPR036821	Peptide deformylase superfamily	SUPERFAMILY	56420	Peptide deformylase	coord: 75..248
None	No IPR available	PANTHER	PTHR10458:SF18	PEPTIDE DEFORMYLASE	coord: 1..263

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0026286.1	Sed0026286.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043686	co-translational protein modification
biological_process	GO:0031365	N-terminal protein amino acid modification
biological_process	GO:0018206	peptidyl-methionine modification
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0042586	peptide deformylase activity