Sed0026258 (gene) Chayote v1

Overview
NameSed0026258
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG10: 32079200 .. 32079978 (+)
RNA-Seq ExpressionSed0026258
SyntenySed0026258
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGCGTTTGCGTCTATTTACTTACCCCCTCGTTTCGCTTTCAACGGACATGCGCTCAGTCTCTCCAATGGCGAAACCATTTTCCACCTGCAAGAATCGAACAACGTTCCAGACCTCTCTCTTCTCCGATTCCGAAATCGACGTCGCAATTCAGCTTGTTCATCTCAGCGAGGATTCCGACCTCGCCGCCTCCTCCGCCGGAATCGAAGACGGAGGATGCAAAAACAGCCTCCGCAGAGCCTCAACCACTCTGATCGAAGACATCTTCGACGAAATCGGAGGAATCGCGAATCGGAGGCGGAAGAAGCGCCGATCGCGTTCTGTTTATGAGATTTACAAATTGACGAAGCCTGTGATCTCCGTGAAGTAACTGGCGGAGGAATCTCGAATATGTACAGTCTCTTTAACTTTTTCGTCTCAGCGAAGATTTAGATTACCACGACGATCTCACCGCCTCCTCTACCGGTTGCAGCAACCACAAATCCGTCTCCTCCGCTGCGAACGCAGCCGGAATGAGAGATTCAGGAAGCTACAACAGCCTCCGCAGAGCAGCAACCACTCCGATCGAAGACATCGGAGGAATCGCAAATCGGAGGCGGAAGAAGCAGCGATCGCGTTCGTTTTACGAGATTTACAAATTGATGAAGGCTGTAATCTCTGTGAAGTAACTGGAAAAGGAATCTCGAAGCGGAAATCGAAATCTGTACGCTCTCTTAACTTTTTGTGTTCGTTAATTTTCCTGAATCGAAACCTAACTGCGTGTTTCTCTGTTTGTGC

mRNA sequence

ATGTTGCGTTTGCGTCTATTTACTTACCCCCTCGTTTCGCTTTCAACGGACATGCGCTCAGTCTCTCCAATGGCGAAACCATTTTCCACCTGCAAGAATCGAACAACGTTCCAGACCTCTCTCTTCTCCGATTCCGAAATCGACGTCGCAATTCAGCTTGTTCATCTCAGCGAGGATTCCGACCTCGCCGCCTCCTCCGCCGGAATCGAAGACGGAGGATGCAAAAACAGCCTCCGCAGAGCCTCAACCACTCTGATCGAAGACATCTTCGACGAAATCGGAGGAATCGCGAATCGGAGGCGGAAGAAGCGCCGATCGCGTTCTGTTTATGAGATTTACAAATTGACGAAGCCTGTGATCTCCGTGAAGTAACTGGCGGAGGAATCTCGAATATGTACAGTCTCTTTAACTTTTTCGTCTCAGCGAAGATTTAGATTACCACGACGATCTCACCGCCTCCTCTACCGGTTGCAGCAACCACAAATCCGTCTCCTCCGCTGCGAACGCAGCCGGAATGAGAGATTCAGGAAGCTACAACAGCCTCCGCAGAGCAGCAACCACTCCGATCGAAGACATCGGAGGAATCGCAAATCGGAGGCGGAAGAAGCAGCGATCGCGTTCGTTTTACGAGATTTACAAATTGATGAAGGCTGTAATCTCTGTGAAGTAACTGGAAAAGGAATCTCGAAGCGGAAATCGAAATCTGTACGCTCTCTTAACTTTTTGTGTTCGTTAATTTTCCTGAATCGAAACCTAACTGCGTGTTTCTCTGTTTGTGC

Coding sequence (CDS)

ATGTTGCGTTTGCGTCTATTTACTTACCCCCTCGTTTCGCTTTCAACGGACATGCGCTCAGTCTCTCCAATGGCGAAACCATTTTCCACCTGCAAGAATCGAACAACGTTCCAGACCTCTCTCTTCTCCGATTCCGAAATCGACGTCGCAATTCAGCTTGTTCATCTCAGCGAGGATTCCGACCTCGCCGCCTCCTCCGCCGGAATCGAAGACGGAGGATGCAAAAACAGCCTCCGCAGAGCCTCAACCACTCTGATCGAAGACATCTTCGACGAAATCGGAGGAATCGCGAATCGGAGGCGGAAGAAGCGCCGATCGCGTTCTGTTTATGAGATTTACAAATTGACGAAGCCTGTGATCTCCGTGAAGTAA

Protein sequence

MLRLRLFTYPLVSLSTDMRSVSPMAKPFSTCKNRTTFQTSLFSDSEIDVAIQLVHLSEDSDLAASSAGIEDGGCKNSLRRASTTLIEDIFDEIGGIANRRRKKRRSRSVYEIYKLTKPVISVK
Homology
[Close]
BLAST of Sed0026258 vs. NCBI nr
Match: KAG6571728.1 (hypothetical protein SDJN03_28456, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119.8 bits (299), Expect = 1.7e-23
Identity = 73/127 (57.48%), Postives = 86/127 (67.72%), Query Frame = 0 

Query: 24  MAKPFSTCKNRTTFQTSLFSDSEIDVAIQLVHLSEDSDL--------------------- 83
           MAK  S+CKNR  F+TS+FSDSEIDVAIQL+HLSEDSD                      
Sbjct: 1   MAKSISSCKNR-RFRTSVFSDSEIDVAIQLLHLSEDSDYLANTIASSTSCSDDKSVASAT 60

Query: 84  -AASSAGIEDGGCKNSLRRA-----STTLIEDIFDEIGGIANRRRKKRRSRSVYEIYKLT 124
            A ++AG+ED G  +S RR      +T+LIEDIF+EIG  +NRRR+KRRSRSVYEIYKLT
Sbjct: 61  SATNAAGMEDDGSHSSSRRGATLVPTTSLIEDIFEEIGDSSNRRRRKRRSRSVYEIYKLT 120

[Close]
BLAST of Sed0026258 vs. NCBI nr
Match: KAG6588821.1 (hypothetical protein SDJN03_17386, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 114.0 bits (284), Expect = 9.2e-22
Identity = 72/121 (59.50%), Postives = 80/121 (66.12%), Query Frame = 0 

Query: 24  MAKPFSTCKNRTTFQTSLFSDSEIDVAIQLVHLSEDSD----LAASSAG----------- 83
           MA+  ST +NR  FQTS+FSDSEIDVAIQL+HLSEDSD    L ASS             
Sbjct: 1   MAESVSTSRNR-RFQTSIFSDSEIDVAIQLIHLSEDSDYHDELPASSTSCSDDKSLASAS 60

Query: 84  ------IEDGGCKNSLRRASTTLIEDIFDEIGGIANRRRKKRRSRSVYEIYKLTKPVISV 124
                 +ED G  N  R   TT IEDI++EIG  ANRRR+KRRSRSVYEIYKLTKPVI V
Sbjct: 61  NSNADEMEDDGRNNGRRGTKTTPIEDIYEEIGDGANRRRRKRRSRSVYEIYKLTKPVIFV 120

[Close]
BLAST of Sed0026258 vs. NCBI nr
Match: EOY05110.1 (Uncharacterized protein TCM_020200 [Theobroma cacao])

HSP 1 Score: 58.9 bits (141), Expect = 3.5e-05
Identity = 40/103 (38.83%), Postives = 59/103 (57.28%), Query Frame = 0 

Query: 24  MAKPFSTCKNRTTFQTSLFSDSEIDVAIQLVHLSEDSD------LAASSAGIEDGGCKNS 83
           MAKP S C+   T+    FS+SEIDVA QL+ L  D+D      L      ++D G    
Sbjct: 1   MAKPSSACQYAGTWG---FSESEIDVARQLIKLCSDNDSIDDSRLTGKRRKVQDEG---- 60

Query: 84  LRRASTTLIEDIFDEIGGIANRRRKKRRSRSVYEIYKLTKPVI 121
             +AS  ++EDIF++     +  R+KR+SRS++ IY  TKP++
Sbjct: 61  FGKASAMIVEDIFED-NEEEHLNRRKRKSRSIHYIYSSTKPLV 95

[Close]
BLAST of Sed0026258 vs. ExPASy TrEMBL
Match: A0A061EJB7 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_020200 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.7e-05
Identity = 40/103 (38.83%), Postives = 59/103 (57.28%), Query Frame = 0 

Query: 24  MAKPFSTCKNRTTFQTSLFSDSEIDVAIQLVHLSEDSD------LAASSAGIEDGGCKNS 83
           MAKP S C+   T+    FS+SEIDVA QL+ L  D+D      L      ++D G    
Sbjct: 1   MAKPSSACQYAGTWG---FSESEIDVARQLIKLCSDNDSIDDSRLTGKRRKVQDEG---- 60

Query: 84  LRRASTTLIEDIFDEIGGIANRRRKKRRSRSVYEIYKLTKPVI 121
             +AS  ++EDIF++     +  R+KR+SRS++ IY  TKP++
Sbjct: 61  FGKASAMIVEDIFED-NEEEHLNRRKRKSRSIHYIYSSTKPLV 95

The following BLAST results are available for this feature:
BLAST of Sed0026258 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6571728.11.7e-2357.48hypothetical protein SDJN03_28456, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6588821.19.2e-2259.50hypothetical protein SDJN03_17386, partial [Cucurbita argyrosperma subsp. sorori... [more]
EOY05110.13.5e-0538.83Uncharacterized protein TCM_020200 [Theobroma cacao][more]
BLAST of Sed0026258 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0026258 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A061EJB71.7e-0538.83Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_020200 PE=4 SV=1[more]
BLAST of Sed0026258 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0026258.1Sed0026258.1mRNA