Sed0026235 (gene) Chayote v1

Overview


Name	Sed0026235
Type	gene
Organism	Sechium edule (Chayote v1)
Description	cytochrome-c oxidases;electron carriers
Location	LG01: 56940488 .. 56948059 (-)
RNA-Seq Expression	Sed0026235
Synteny	Sed0026235

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATGAAGAACAAACATACGGTGGCCGATTCTTACTTCCCCTCGCATCACAGACCTCCGCCAAGTCCTCGTCTTTCATTCGCATCCATTTGCGGCAGCTTTCGGAACAACGATTTCTCCATCTCCCCCGTCGCTTGGATCTGAAACTTCCAAGATCACGTAAGCTTCAATCCATTATTCCATTTCTTCTTTAGGGTTAAGATTTCACGGATTTGTCTCTGATTCTCTGGTTATTCTGCTTCGTGAATCTTGTGTGTTTGATGTATTTATGCTTCAAATGATTTCCCACCCGATTTTTTCCCCTTAGGTTATGTTAGTTTTCGGTTTCTTGAGCGTTTTCGAGGGATTTAGATTCATATATTGATTCCCCTATTTGATTGACAGACGCTATAGCCATAATTTAATCATTGAATCATCATTTAATCGTTCAAACATGAGAGCGTTGAGGACTTCCGGGAAAAAGAGAAAAGTTGATGGACTCAATTAAGTGGTTATTTCGTGTAATTTTCATTTTGCTAGCCTATTTTGTGGAAATAGGAAATTATATCGTTCTTCTGCAGCTGAAACTGAGAGTGATTGCTTTGAGTTTCCTGGCTCATTATCATATACGTGATTTATTAAATTGGTGAATCAGATGACAATATGCGTGTAAGAATGGAGATGGATATTGTCCTTCCTTGTTATATGTGGATAAACGAAACATGCATCAAGTTTCAGCCTGGGCTAGTGTTGATGAAGATGCATGGGAGAATTTAGATATGATTTAAGATCCTCATGTCATATTGTATGGATTTTGATATTTGCTATAGTTCTTGATTGCTTGAAATTTCCAGAATTTTAACTATCATTGTTAAAGCATCATTGAATTGTTTTCTTGAGAATTTAAATTTCCAAGATTTTGATAAAGCATCATCTTACAATTGTTCTCTTTAACTATCATTGTTATCTCTTAGTTGCAAACAGTTTTCTATTTTCCATGATTGTAGTTTTGATATTCTTATAAACAATTGTAGATCCATTTTATAATTGGTCATATGCCATTTTTGTAATTTCATATTATTAATGAAATTTTTTCTTATCAAAAAAAAAAAAGAAGGAAATTTCCAGAAGTTCCAAGTGACATTCTGTTTTATTTCCAAGGCCCACCGTTGAGTGATTTTCCTCAATTGTTTGTTTGTATCATTTGTTGATTAATTTCTGATTGAACTGTTGAAAATAAAGATCTGTGCTCGGAATATCCATTTTATCCATGGGTCTCCGGTGACCAATGAGTATTGGGTTGGATCATGACTCGTGATTTAAGTGTTGGCTAGAATTTGGAAGCGGAGTCATCTGACTGATGGGAATTTCACTGTTTTGAGATAGTTTCGCTTTCTGGACCTCTATAATTTTCTAGCCGTCAAGCTATATATCATTCTTTCAGAATTTTATTGTTGATACCTTTTGTACATATTGTTTGTGTCCATGCTTTAGAATTGACAGGTAAGATACTTTGTAGAGTCCTTTGATTTCATGTTTGCTGTAAAGAAGAAATGAATGAGGCATGTAAGGGAAATACGCTTCACTCATTGACTTATTACTATATACATGAATTTGATTTTGCACTGGAAACATACACTTGCAAACTCGCAAATTTCTATACGAGTGAGAATAGACTTGGAGTTGGAAGATGTAGGAAGCAGGCTTTATGGAAATTTTTATTTGAATTATCACACAGGATGAGTGAACAACCATTTAGGCCCCGTGAGAAACTTGTTGAAAGGCAAAAATATTTCCAGAGCATCCACAAGCACACTTATCTTAAAGGGCCAATGGATAAGGTCACCTCTGTTGCTATTCCAATTGCTTTGGCAGCTTCATGCTTGTATCTCATAGTAAGTCTTCTTCTCTCTTTAGTGCTTGTCAAGAACTTCTTTTCAATTTTGAAGAGCGTGAAATTGAAAAGAAAAAACTAGTTGTCAAGCATTGGATGTAATGTGGGTCTTACTCCTGTTTTCATGCAGGGACGAGGAGTCTATAACATGTCACATGGCATCGGTAAGAAAGAATGAGATTGAAGTCTCTCTGCATTGAAATGTCAAAGAGTTTGATGCTCTGGACCCATGTTAATTTTGTTATTTCAAGTAATCTTTGTCTAATAATTGCTTAGTTGCAGACTCTTGGCTACCAATTGATTTGAATATCATTATTATCAGATGATTCCTATGTGTTGTGTGTAATGTAATAGATTGTCTCAGATTGTTGGTTTTCCCAATTTCTGAAATAGTGTCTGGCTTGCAGTTTGCTTTTCTGATTAGCGGATTCTTAATTTGCACAATTAGACTATGCAAGTTATGTGTTCAATCTGTAGAGT

mRNA sequence

AAAATGAAGAACAAACATACGGTGGCCGATTCTTACTTCCCCTCGCATCACAGACCTCCGCCAAGTCCTCGTCTTTCATTCGCATCCATTTGCGGCAGCTTTCGGAACAACGATTTCTCCATCTCCCCCGTCGCTTGGATCTGAAACTTCCAAGATCACGATGAGTGAACAACCATTTAGGCCCCGTGAGAAACTTGTTGAAAGGCAAAAATATTTCCAGAGCATCCACAAGCACACTTATCTTAAAGGGCCAATGGATAAGGTCACCTCTGTTGCTATTCCAATTGCTTTGGCAGCTTCATGCTTGTATCTCATAGGACGAGGAGTCTATAACATGTCACATGGCATCGGTAAGAAAGAATGAGATTGAAGTCTCTCTGCATTGAAATGTCAAAGAGTTTGATGCTCTGGACCCATGTTAATTTTGTTATTTCAAGTAATCTTTGTCTAATAATTGCTTAGTTGCAGACTCTTGGCTACCAATTGATTTGAATATCATTATTATCAGATGATTCCTATGTGTTGTGTGTAATGTAATAGATTGTCTCAGATTGTTGGTTTTCCCAATTTCTGAAATAGTGTCTGGCTTGCAGTTTGCTTTTCTGATTAGCGGATTCTTAATTTGCACAATTAGACTATGCAAGTTATGTGTTCAATCTGTAGAGT

Coding sequence (CDS)

ATGAGTGAACAACCATTTAGGCCCCGTGAGAAACTTGTTGAAAGGCAAAAATATTTCCAGAGCATCCACAAGCACACTTATCTTAAAGGGCCAATGGATAAGGTCACCTCTGTTGCTATTCCAATTGCTTTGGCAGCTTCATGCTTGTATCTCATAGGACGAGGAGTCTATAACATGTCACATGGCATCGGTAAGAAAGAATGA

Protein sequence

MSEQPFRPREKLVERQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASCLYLIGRGVYNMSHGIGKKE

Homology

[Close]

BLAST of Sed0026235 vs. NCBI nr
Match: XP_022957674.1 (uncharacterized protein LOC111459140 isoform X1 [Cucurbita moschata] >XP_022996284.1 uncharacterized protein LOC111491558 isoform X1 [Cucurbita maxima])

HSP 1 Score: 132.9 bits (333), Expect = 1.0e-27
Identity = 62/67 (92.54%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MSEQPFRPREKLVERQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASCLYLIGRGVYNMS 60
          M+EQPFRPREKL+ERQKYFQSIHKHTYLKGPMDK+TSVAIPIALAAS LYLIGRG+YNMS
Sbjct: 3  MTEQPFRPREKLIERQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYNMS 62

Query: 61 HGIGKKE 68
          HGIGKKE
Sbjct: 63 HGIGKKE 69

[Close]

BLAST of Sed0026235 vs. NCBI nr
Match: KAG6606001.1 (hypothetical protein SDJN03_03318, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 132.9 bits (333), Expect = 1.0e-27
Identity = 62/67 (92.54%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1   MSEQPFRPREKLVERQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASCLYLIGRGVYNMS 60
           M+EQPFRPREKL+ERQKYFQSIHKHTYLKGPMDK+TSVAIPIALAAS LYLIGRG+YNMS
Sbjct: 55  MTEQPFRPREKLIERQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYNMS 114

Query: 61  HGIGKKE 68
           HGIGKKE
Sbjct: 115 HGIGKKE 121

[Close]

BLAST of Sed0026235 vs. NCBI nr
Match: XP_022957675.1 (uncharacterized protein LOC111459140 isoform X2 [Cucurbita moschata] >XP_022996285.1 uncharacterized protein LOC111491558 isoform X2 [Cucurbita maxima] >KAG7035951.1 hypothetical protein SDJN02_02751, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132.9 bits (333), Expect = 1.0e-27
Identity = 62/67 (92.54%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MSEQPFRPREKLVERQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASCLYLIGRGVYNMS 60
          M+EQPFRPREKL+ERQKYFQSIHKHTYLKGPMDK+TSVAIPIALAAS LYLIGRG+YNMS
Sbjct: 1  MTEQPFRPREKLIERQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYNMS 60

Query: 61 HGIGKKE 68
          HGIGKKE
Sbjct: 61 HGIGKKE 67

[Close]

BLAST of Sed0026235 vs. NCBI nr
Match: XP_022996277.1 (uncharacterized protein LOC111491550 [Cucurbita maxima])

HSP 1 Score: 132.1 bits (331), Expect = 1.8e-27
Identity = 62/67 (92.54%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MSEQPFRPREKLVERQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASCLYLIGRGVYNMS 60
          MSE+PFRPREKL+E+QKYFQSIHKHTYLKGPMDKVTSVAIPIALAAS LYLIGRG+YNMS
Sbjct: 1  MSEEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYNMS 60

Query: 61 HGIGKKE 68
          HGIGKKE
Sbjct: 61 HGIGKKE 67

[Close]

BLAST of Sed0026235 vs. NCBI nr
Match: XP_023532621.1 (uncharacterized protein LOC111794729 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.7 bits (330), Expect = 2.3e-27
Identity = 61/67 (91.04%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MSEQPFRPREKLVERQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASCLYLIGRGVYNMS 60
          M+EQPFRPREKL+E+QKYFQSIHKHTYLKGPMDK+TSVAIPIALAAS LYLIGRG+YNMS
Sbjct: 3  MTEQPFRPREKLIEKQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYNMS 62

Query: 61 HGIGKKE 68
          HGIGKKE
Sbjct: 63 HGIGKKE 69

[Close]

BLAST of Sed0026235 vs. ExPASy TrEMBL
Match: A0A6J1K6C6 (uncharacterized protein LOC111491558 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111491558 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 5.0e-28
Identity = 62/67 (92.54%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MSEQPFRPREKLVERQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASCLYLIGRGVYNMS 60
          M+EQPFRPREKL+ERQKYFQSIHKHTYLKGPMDK+TSVAIPIALAAS LYLIGRG+YNMS
Sbjct: 1  MTEQPFRPREKLIERQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYNMS 60

Query: 61 HGIGKKE 68
          HGIGKKE
Sbjct: 61 HGIGKKE 67

[Close]

BLAST of Sed0026235 vs. ExPASy TrEMBL
Match: A0A6J1K8A8 (uncharacterized protein LOC111491558 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111491558 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 5.0e-28
Identity = 62/67 (92.54%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MSEQPFRPREKLVERQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASCLYLIGRGVYNMS 60
          M+EQPFRPREKL+ERQKYFQSIHKHTYLKGPMDK+TSVAIPIALAAS LYLIGRG+YNMS
Sbjct: 3  MTEQPFRPREKLIERQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYNMS 62

Query: 61 HGIGKKE 68
          HGIGKKE
Sbjct: 63 HGIGKKE 69

[Close]

BLAST of Sed0026235 vs. ExPASy TrEMBL
Match: A0A6J1H2N1 (uncharacterized protein LOC111459140 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111459140 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 5.0e-28
Identity = 62/67 (92.54%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MSEQPFRPREKLVERQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASCLYLIGRGVYNMS 60
          M+EQPFRPREKL+ERQKYFQSIHKHTYLKGPMDK+TSVAIPIALAAS LYLIGRG+YNMS
Sbjct: 3  MTEQPFRPREKLIERQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYNMS 62

Query: 61 HGIGKKE 68
          HGIGKKE
Sbjct: 63 HGIGKKE 69

[Close]

BLAST of Sed0026235 vs. ExPASy TrEMBL
Match: A0A6J1H176 (uncharacterized protein LOC111459140 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111459140 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 5.0e-28
Identity = 62/67 (92.54%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MSEQPFRPREKLVERQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASCLYLIGRGVYNMS 60
          M+EQPFRPREKL+ERQKYFQSIHKHTYLKGPMDK+TSVAIPIALAAS LYLIGRG+YNMS
Sbjct: 1  MTEQPFRPREKLIERQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYNMS 60

Query: 61 HGIGKKE 68
          HGIGKKE
Sbjct: 61 HGIGKKE 67

[Close]

BLAST of Sed0026235 vs. ExPASy TrEMBL
Match: A0A6J1K1G6 (uncharacterized protein LOC111491550 OS=Cucurbita maxima OX=3661 GN=LOC111491550 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 8.6e-28
Identity = 62/67 (92.54%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MSEQPFRPREKLVERQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASCLYLIGRGVYNMS 60
          MSE+PFRPREKL+E+QKYFQSIHKHTYLKGPMDKVTSVAIPIALAAS LYLIGRG+YNMS
Sbjct: 1  MSEEPFRPREKLIEKQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASSLYLIGRGIYNMS 60

Query: 61 HGIGKKE 68
          HGIGKKE
Sbjct: 61 HGIGKKE 67

[Close]

BLAST of Sed0026235 vs. TAIR 10
Match: AT4G21105.1 (cytochrome-c oxidases;electron carriers )

HSP 1 Score: 113.2 bits (282), Expect = 7.9e-26
Identity = 52/67 (77.61%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 1  MSEQPFRPREKLVERQKYFQSIHKHTYLKGPMDKVTSVAIPIALAASCLYLIGRGVYNMS 60
          ++E PFRPREKL+E+Q+ FQSI +HTYLKGPMDK+TSVAIPIALAAS LY+IG G+YNMS
Sbjct: 2  LTETPFRPREKLLEKQRLFQSIQRHTYLKGPMDKITSVAIPIALAASSLYMIGTGIYNMS 61

Query: 61 HGIGKKE 68
          +GIGKKE
Sbjct: 62 NGIGKKE 68

[Close]

BLAST of Sed0026235 vs. TAIR 10
Match: AT4G21105.2 (cytochrome-c oxidases;electron carriers )

HSP 1 Score: 67.8 bits (164), Expect = 3.8e-12
Identity = 29/41 (70.73%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1  MSEQPFRPREKLVERQKYFQSIHKHTYLKGPMDKVTSVAIP 42
          ++E PFRPREKL+E+Q+ FQSI +HTYLKGPMDK+TS+ IP
Sbjct: 2  LTETPFRPREKLLEKQRLFQSIQRHTYLKGPMDKITSLFIP 42

The following BLAST results are available for this feature:

BLAST of Sed0026235 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022957674.1	1.0e-27	92.54	uncharacterized protein LOC111459140 isoform X1 [Cucurbita moschata] >XP_0229962...	[more]
KAG6606001.1	1.0e-27	92.54	hypothetical protein SDJN03_03318, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022957675.1	1.0e-27	92.54	uncharacterized protein LOC111459140 isoform X2 [Cucurbita moschata] >XP_0229962...	[more]
XP_022996277.1	1.8e-27	92.54	uncharacterized protein LOC111491550 [Cucurbita maxima]	[more]
XP_023532621.1	2.3e-27	91.04	uncharacterized protein LOC111794729 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0026235 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0026235 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K6C6	5.0e-28	92.54	uncharacterized protein LOC111491558 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1K8A8	5.0e-28	92.54	uncharacterized protein LOC111491558 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1H2N1	5.0e-28	92.54	uncharacterized protein LOC111459140 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1H176	5.0e-28	92.54	uncharacterized protein LOC111459140 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1K1G6	8.6e-28	92.54	uncharacterized protein LOC111491550 OS=Cucurbita maxima OX=3661 GN=LOC111491550...	[more]

BLAST of Sed0026235 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21105.1	7.9e-26	77.61	cytochrome-c oxidases;electron carriers	[more]
AT4G21105.2	3.8e-12	70.73	cytochrome-c oxidases;electron carriers	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039297	Cytochrome c oxidase subunit VII	PFAM	PF02238	COX7a	coord: 72..124 e-value: 3.4E-14 score: 53.0
IPR039296	Predicted cytochrome c oxidase subunit VII	PANTHER	PTHR35308	CYTOCHROME C OXIDASE SUBUNIT 7	coord: 55..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0026235.2	Sed0026235.2	mRNA
Sed0026235.1	Sed0026235.1	mRNA
Sed0026235.3	Sed0026235.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane