Sed0026210 (gene) Chayote v1

Overview


Name	Sed0026210
Type	gene
Organism	Sechium edule (Chayote v1)
Description	SAUR-like auxin-responsive protein family
Location	LG04: 47056744 .. 47057406 (+)
RNA-Seq Expression	Sed0026210
Synteny	Sed0026210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCATCTTTCTACCTTTGAGTGTGACCTTTGAGCAACTTAAGTCTTTCATCTATATAAGGGACAAGTAACTTGGTTCACAATCATCAAGTGTCTTCCATTCTTCTGATTATCATAAAAAGTTTCCAACTTTTGCACTCCTCTAAGAGTCTCATTAGTTCTCTTTGAAAGATACTGTAACATGGGTTTCCGTTTGCCTAGGATTGTTCACCCTAAGAAAAGTCTTAGACGATCTTCATCATCGGGAAGTGGAGCACCGGCAGTTGATGTTCCGAAGGGGTACTTTACAGTTTACGTTGGCGAGGGGCAAAAGAAACGTTTTGTCATCCCACTATCTTACTTGAATGAACCCTCTTTTCAAGATTTGTTGAGTCAAGCAGAAGAAGAATTTGGTTATGATCATCCAATGGGTGGCATCACAATTCCTTCCAGTGAAGACCTTTTCCTCGATCTCGTTCGGAGTTTGAATGATTCATGATCAATACAGGGATTAGAACCTGGAAATTGATAGTAAAGAAAAAAGAGTTAGAATAGTACAGAAAGAATGTAGTCTGTAAACATTTTTTAAATGATAGAATATGATTCTTTGAATTGAAACTTTTGTCTAGGGAAGAAAGCCATTCAAGTTTTCTTTTATTTCATCTCTATGATTTGATTTAACACCA

mRNA sequence

CTCATCTTTCTACCTTTGAGTGTGACCTTTGAGCAACTTAAGTCTTTCATCTATATAAGGGACAAGTAACTTGGTTCACAATCATCAAGTGTCTTCCATTCTTCTGATTATCATAAAAAGTTTCCAACTTTTGCACTCCTCTAAGAGTCTCATTAGTTCTCTTTGAAAGATACTGTAACATGGGTTTCCGTTTGCCTAGGATTGTTCACCCTAAGAAAAGTCTTAGACGATCTTCATCATCGGGAAGTGGAGCACCGGCAGTTGATGTTCCGAAGGGGTACTTTACAGTTTACGTTGGCGAGGGGCAAAAGAAACGTTTTGTCATCCCACTATCTTACTTGAATGAACCCTCTTTTCAAGATTTGTTGAGTCAAGCAGAAGAAGAATTTGGTTATGATCATCCAATGGGTGGCATCACAATTCCTTCCAGTGAAGACCTTTTCCTCGATCTCGTTCGGAGTTTGAATGATTCATGATCAATACAGGGATTAGAACCTGGAAATTGATAGTAAAGAAAAAAGAGTTAGAATAGTACAGAAAGAATGTAGTCTGTAAACATTTTTTAAATGATAGAATATGATTCTTTGAATTGAAACTTTTGTCTAGGGAAGAAAGCCATTCAAGTTTTCTTTTATTTCATCTCTATGATTTGATTTAACACCA

Coding sequence (CDS)

ATGGGTTTCCGTTTGCCTAGGATTGTTCACCCTAAGAAAAGTCTTAGACGATCTTCATCATCGGGAAGTGGAGCACCGGCAGTTGATGTTCCGAAGGGGTACTTTACAGTTTACGTTGGCGAGGGGCAAAAGAAACGTTTTGTCATCCCACTATCTTACTTGAATGAACCCTCTTTTCAAGATTTGTTGAGTCAAGCAGAAGAAGAATTTGGTTATGATCATCCAATGGGTGGCATCACAATTCCTTCCAGTGAAGACCTTTTCCTCGATCTCGTTCGGAGTTTGAATGATTCATGA

Protein sequence

MGFRLPRIVHPKKSLRRSSSSGSGAPAVDVPKGYFTVYVGEGQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPSSEDLFLDLVRSLNDS

Homology

[Close]

BLAST of Sed0026210 vs. NCBI nr
Match: XP_022952259.1 (auxin-induced protein 15A-like [Cucurbita moschata])

HSP 1 Score: 176.4 bits (446), Expect = 1.2e-40
Identity = 85/98 (86.73%), Postives = 90/98 (91.84%), Query Frame = 0


Query: 1  MGFRLPRIVHPKKSLRRSSSSGSGAPAVDVPKGYFTVYVGEGQKKRFVIPLSYLNEPSFQ 60
          MGFRLPRIVH K+S RRSSS+G+G+  VDVPKGYFTVYVGE QKKRFVIPLSYLN+PSFQ
Sbjct: 1  MGFRLPRIVHAKQSFRRSSSTGNGSSTVDVPKGYFTVYVGEVQKKRFVIPLSYLNQPSFQ 60

Query: 61 DLLSQAEEEFGYDHPMGGITIPSSEDLFLDLVRSLNDS 99
          DLLSQAEEEFGYDHPMGGITIP SEDLFLDL RSL DS
Sbjct: 61 DLLSQAEEEFGYDHPMGGITIPCSEDLFLDLTRSLKDS 98

[Close]

BLAST of Sed0026210 vs. NCBI nr
Match: KAG6572087.1 (hypothetical protein SDJN03_28815, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 174.9 bits (442), Expect = 3.5e-40
Identity = 83/98 (84.69%), Postives = 90/98 (91.84%), Query Frame = 0


Query: 1  MGFRLPRIVHPKKSLRRSSSSGSGAPAVDVPKGYFTVYVGEGQKKRFVIPLSYLNEPSFQ 60
          MGFRLPRIVH K+S RRSSS+G+G+  VDVPKGYFT+YVGE QKKRFVIPLSYLN+PSFQ
Sbjct: 1  MGFRLPRIVHAKQSFRRSSSTGNGSSTVDVPKGYFTIYVGEVQKKRFVIPLSYLNQPSFQ 60

Query: 61 DLLSQAEEEFGYDHPMGGITIPSSEDLFLDLVRSLNDS 99
          DLLSQAE+EFGYDHPMGGITIP SEDLFLDL RSL DS
Sbjct: 61 DLLSQAEDEFGYDHPMGGITIPCSEDLFLDLTRSLKDS 98

[Close]

BLAST of Sed0026210 vs. NCBI nr
Match: XP_022969518.1 (auxin-induced protein X10A-like [Cucurbita maxima])

HSP 1 Score: 174.9 bits (442), Expect = 3.5e-40
Identity = 87/100 (87.00%), Postives = 92/100 (92.00%), Query Frame = 0


Query: 1   MGFRLPRIVHPKKSLRRSSSSGSGA--PAVDVPKGYFTVYVGEGQKKRFVIPLSYLNEPS 60
           MGFRLPRIVH KKSL+RSSSSG+GA   AVDVPKGYFTVYVGE QKKRFVIPLSYLN+PS
Sbjct: 1   MGFRLPRIVHAKKSLQRSSSSGNGASSKAVDVPKGYFTVYVGEAQKKRFVIPLSYLNQPS 60

Query: 61  FQDLLSQAEEEFGYDHPMGGITIPSSEDLFLDLVRSLNDS 99
           FQDLLSQAEEEFGY+HPMGGIT+P SED FLDL RSLNDS
Sbjct: 61  FQDLLSQAEEEFGYNHPMGGITVPCSEDDFLDLTRSLNDS 100

[Close]

BLAST of Sed0026210 vs. NCBI nr
Match: XP_023529827.1 (auxin-induced protein 15A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 174.1 bits (440), Expect = 6.0e-40
Identity = 84/98 (85.71%), Postives = 90/98 (91.84%), Query Frame = 0


Query: 1  MGFRLPRIVHPKKSLRRSSSSGSGAPAVDVPKGYFTVYVGEGQKKRFVIPLSYLNEPSFQ 60
          MGFRLPRIV  K+SLRRSSSSG+GA AVDVPKGYFTVYVGE QKKR V+PLSYLN+PSFQ
Sbjct: 1  MGFRLPRIVKAKQSLRRSSSSGNGASAVDVPKGYFTVYVGEEQKKRLVVPLSYLNQPSFQ 60

Query: 61 DLLSQAEEEFGYDHPMGGITIPSSEDLFLDLVRSLNDS 99
          DLLSQ EEEFGYDHPMGGITIP SED+FLDL RSLN+S
Sbjct: 61 DLLSQVEEEFGYDHPMGGITIPCSEDVFLDLTRSLNES 98

[Close]

BLAST of Sed0026210 vs. NCBI nr
Match: XP_023554217.1 (auxin-induced protein 15A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 173.7 bits (439), Expect = 7.8e-40
Identity = 82/98 (83.67%), Postives = 90/98 (91.84%), Query Frame = 0


Query: 1  MGFRLPRIVHPKKSLRRSSSSGSGAPAVDVPKGYFTVYVGEGQKKRFVIPLSYLNEPSFQ 60
          MGFRLPRIVH K+S RRSSS+G+G+  VD+PKGYFTVYVGE QKKRFVIPLSYLN+PSFQ
Sbjct: 1  MGFRLPRIVHAKQSFRRSSSTGNGSSTVDIPKGYFTVYVGEVQKKRFVIPLSYLNQPSFQ 60

Query: 61 DLLSQAEEEFGYDHPMGGITIPSSEDLFLDLVRSLNDS 99
          DLLSQ+E+EFGYDHPMGGITIP SEDLFLDL RSL DS
Sbjct: 61 DLLSQSEDEFGYDHPMGGITIPCSEDLFLDLTRSLKDS 98

[Close]

BLAST of Sed0026210 vs. ExPASy Swiss-Prot
Match: P33080 (Auxin-induced protein X10A OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.9e-25
Identity = 58/97 (59.79%), Postives = 72/97 (74.23%), Query Frame = 0


Query: 1  MGFRLPRIVHPKKSLRRSSSSGSGAPAVDVPKGYFTVYVGEGQKKRFVIPLSYLNEPSFQ 60
          MGFRLP I     +  ++SS      +V+VPKGY  VYVG+ + +RF+IP+SYLN+PSFQ
Sbjct: 1  MGFRLPGIRKTSIAANQASSK-----SVEVPKGYLVVYVGD-KMRRFLIPVSYLNQPSFQ 60

Query: 61 DLLSQAEEEFGYDHPMGGITIPSSEDLFLDLVRSLND 98
          DLL+QAEEEFGYDHPMGG+TIP  ED FL +   LND
Sbjct: 61 DLLNQAEEEFGYDHPMGGLTIPCKEDEFLTVTSHLND 91

[Close]

BLAST of Sed0026210 vs. ExPASy Swiss-Prot
Match: P33081 (Auxin-induced protein 15A OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 5.6e-25
Identity = 60/96 (62.50%), Postives = 69/96 (71.88%), Query Frame = 0


Query: 1  MGFRLPRIVHPKKSLRRSSSSGSGAPAVDVPKGYFTVYVGEGQKKRFVIPLSYLNEPSFQ 60
          MGFRLP        +R++S       A D PKGY  VYVGE + KRFVIP+SYLN+PSFQ
Sbjct: 1  MGFRLP-------GIRKASK------AADAPKGYLAVYVGE-KLKRFVIPVSYLNQPSFQ 60

Query: 61 DLLSQAEEEFGYDHPMGGITIPSSEDLFLDLVRSLN 97
          DLLSQAEEEFGYDHPMGG+TIP SED+F  +   LN
Sbjct: 61 DLLSQAEEEFGYDHPMGGLTIPCSEDVFQCITSCLN 82

[Close]

BLAST of Sed0026210 vs. ExPASy Swiss-Prot
Match: P32295 (Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata OX=3916 GN=ARG7 PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.3e-24
Identity = 59/96 (61.46%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 1  MGFRLPRIVHPKKSLRRSSSSGSGAPAVDVPKGYFTVYVGEGQKKRFVIPLSYLNEPSFQ 60
          MGFRLP I   +K+L  S+ + + +  +D PKGY  VYVGE   KRFVIP+S+LN+P FQ
Sbjct: 1  MGFRLPGI---RKTL--SARNEASSKVLDAPKGYLAVYVGENM-KRFVIPVSHLNQPLFQ 60

Query: 61 DLLSQAEEEFGYDHPMGGITIPSSEDLFLDLVRSLN 97
          DLLSQAEEEFGYDHPMGG+TIP SEDLF  +   L+
Sbjct: 61 DLLSQAEEEFGYDHPMGGLTIPCSEDLFQHITSCLS 90

[Close]

BLAST of Sed0026210 vs. ExPASy Swiss-Prot
Match: P33083 (Auxin-induced protein 6B OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.6e-24
Identity = 60/96 (62.50%), Postives = 69/96 (71.88%), Query Frame = 0


Query: 1  MGFRLPRIVHPKKSLRRSSSSGSGAPAVDVPKGYFTVYVGEGQKKRFVIPLSYLNEPSFQ 60
          MGFRLP I     S  ++SS      AVDV KGY  VYVGE + +RFVIP+SYLN+PSFQ
Sbjct: 1  MGFRLPGIRKASFSANQASSK-----AVDVEKGYLAVYVGE-KMRRFVIPVSYLNKPSFQ 60

Query: 61 DLLSQAEEEFGYDHPMGGITIPSSEDLFLDLVRSLN 97
          DLLSQAEEEFGY HP GG+TIP SED+F  +   LN
Sbjct: 61 DLLSQAEEEFGYHHPNGGLTIPCSEDVFQHITSFLN 90

[Close]

BLAST of Sed0026210 vs. ExPASy Swiss-Prot
Match: P33082 (Auxin-induced protein X15 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.6e-24
Identity = 58/96 (60.42%), Postives = 71/96 (73.96%), Query Frame = 0


Query: 1  MGFRLPRIVHPKKSLRRSSSSGSGAPAVDVPKGYFTVYVGEGQKKRFVIPLSYLNEPSFQ 60
          MGFRLP        +R++S+      AVD PKGY  VYVGE + KRFVIP+SY+N+PSFQ
Sbjct: 1  MGFRLP-------GIRKASN------AVDAPKGYLAVYVGE-KMKRFVIPVSYMNQPSFQ 60

Query: 61 DLLSQAEEEFGYDHPMGGITIPSSEDLFLDLVRSLN 97
          DLL+QAEEEFGYDHPMGG+TIP SE++F  +   LN
Sbjct: 61 DLLTQAEEEFGYDHPMGGLTIPCSEEVFQRITCCLN 82

[Close]

BLAST of Sed0026210 vs. ExPASy TrEMBL
Match: A0A6J1GL62 (auxin-induced protein 15A-like OS=Cucurbita moschata OX=3662 GN=LOC111454989 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 5.8e-41
Identity = 85/98 (86.73%), Postives = 90/98 (91.84%), Query Frame = 0


Query: 1  MGFRLPRIVHPKKSLRRSSSSGSGAPAVDVPKGYFTVYVGEGQKKRFVIPLSYLNEPSFQ 60
          MGFRLPRIVH K+S RRSSS+G+G+  VDVPKGYFTVYVGE QKKRFVIPLSYLN+PSFQ
Sbjct: 1  MGFRLPRIVHAKQSFRRSSSTGNGSSTVDVPKGYFTVYVGEVQKKRFVIPLSYLNQPSFQ 60

Query: 61 DLLSQAEEEFGYDHPMGGITIPSSEDLFLDLVRSLNDS 99
          DLLSQAEEEFGYDHPMGGITIP SEDLFLDL RSL DS
Sbjct: 61 DLLSQAEEEFGYDHPMGGITIPCSEDLFLDLTRSLKDS 98

[Close]

BLAST of Sed0026210 vs. ExPASy TrEMBL
Match: A0A6J1I180 (auxin-induced protein X10A-like OS=Cucurbita maxima OX=3661 GN=LOC111468494 PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.7e-40
Identity = 87/100 (87.00%), Postives = 92/100 (92.00%), Query Frame = 0


Query: 1   MGFRLPRIVHPKKSLRRSSSSGSGA--PAVDVPKGYFTVYVGEGQKKRFVIPLSYLNEPS 60
           MGFRLPRIVH KKSL+RSSSSG+GA   AVDVPKGYFTVYVGE QKKRFVIPLSYLN+PS
Sbjct: 1   MGFRLPRIVHAKKSLQRSSSSGNGASSKAVDVPKGYFTVYVGEAQKKRFVIPLSYLNQPS 60

Query: 61  FQDLLSQAEEEFGYDHPMGGITIPSSEDLFLDLVRSLNDS 99
           FQDLLSQAEEEFGY+HPMGGIT+P SED FLDL RSLNDS
Sbjct: 61  FQDLLSQAEEEFGYNHPMGGITVPCSEDDFLDLTRSLNDS 100

[Close]

BLAST of Sed0026210 vs. ExPASy TrEMBL
Match: A0A6J1GL57 (auxin-induced protein X10A-like OS=Cucurbita moschata OX=3662 GN=LOC111454983 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.9e-39
Identity = 88/101 (87.13%), Postives = 92/101 (91.09%), Query Frame = 0


Query: 1   MGFRLPRIVHPKKSLRRSSSSGSGA--PAVDVPKGYFTVYVGEGQKKRFVIPLSYLNEPS 60
           MGFRLPRIVH KKSL+RSSSSG+GA   AVDVPKGYFTVYVGE QKKRFVIPLSYLN+PS
Sbjct: 1   MGFRLPRIVHAKKSLQRSSSSGNGASSKAVDVPKGYFTVYVGEAQKKRFVIPLSYLNQPS 60

Query: 61  FQDLLSQAEEEFGYDHPMGGITIPSSEDLF-LDLVRSLNDS 99
           FQDLLSQAEEEFGYDHPMGGITIP SE+ F LDL RSLNDS
Sbjct: 61  FQDLLSQAEEEFGYDHPMGGITIPCSEEEFLLDLTRSLNDS 101

[Close]

BLAST of Sed0026210 vs. ExPASy TrEMBL
Match: A0A6J1I054 (auxin-induced protein 15A-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111468495 PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 4.2e-39
Identity = 81/98 (82.65%), Postives = 89/98 (90.82%), Query Frame = 0


Query: 1  MGFRLPRIVHPKKSLRRSSSSGSGAPAVDVPKGYFTVYVGEGQKKRFVIPLSYLNEPSFQ 60
          MG RLPRIVH K+S R+SSS+G+G+  VDVPKGYFTVYVGE QKKRFVIPLSYLN+P+FQ
Sbjct: 1  MGIRLPRIVHAKQSFRQSSSTGNGSSTVDVPKGYFTVYVGEVQKKRFVIPLSYLNQPTFQ 60

Query: 61 DLLSQAEEEFGYDHPMGGITIPSSEDLFLDLVRSLNDS 99
          DLLSQAE+EFGYDHPMGGITIP SEDLFLDL RSL DS
Sbjct: 61 DLLSQAEDEFGYDHPMGGITIPCSEDLFLDLTRSLKDS 98

[Close]

BLAST of Sed0026210 vs. ExPASy TrEMBL
Match: A0A6J1C5R3 (auxin-induced protein 15A-like OS=Momordica charantia OX=3673 GN=LOC111007633 PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 5.4e-39
Identity = 85/100 (85.00%), Postives = 90/100 (90.00%), Query Frame = 0


Query: 1   MGFRLPRIVHPKKSLRRSSSSGSGA--PAVDVPKGYFTVYVGEGQKKRFVIPLSYLNEPS 60
           MGFRLPRIVH K+SLRRSSS+G+GA   AVDVPKGYFTVYVGE QKKRFVIPLSYLNEPS
Sbjct: 1   MGFRLPRIVHAKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPS 60

Query: 61  FQDLLSQAEEEFGYDHPMGGITIPSSEDLFLDLVRSLNDS 99
           FQDLL QAEEEFGYDHPMGGITIP SED FL L +SLN+S
Sbjct: 61  FQDLLGQAEEEFGYDHPMGGITIPCSEDTFLSLTQSLNNS 100

[Close]

BLAST of Sed0026210 vs. TAIR 10
Match: AT4G38840.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 123.6 bits (309), Expect = 8.6e-29
Identity = 56/99 (56.57%), Postives = 74/99 (74.75%), Query Frame = 0


Query: 1  MGFRLPRIVHPKKSLRRSS---SSGSGAPAVDVPKGYFTVYVGEGQKKRFVIPLSYLNEP 60
          M  R+PR++   K + R +   SS S + ++DVPKGY  VYVGE   KRFV+P+SYL++P
Sbjct: 1  MAIRIPRVLQSSKQILRQAKLLSSSSSSSSLDVPKGYLAVYVGEQNMKRFVVPVSYLDQP 60

Query: 61 SFQDLLSQAEEEFGYDHPMGGITIPSSEDLFLDLVRSLN 97
          SFQDLL +AEEEFG+DHPMGG+TIP SE++F+DL    N
Sbjct: 61 SFQDLLRKAEEEFGFDHPMGGLTIPCSEEIFIDLASRFN 99

[Close]

BLAST of Sed0026210 vs. TAIR 10
Match: AT5G18080.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 107.8 bits (268), Expect = 4.9e-24
Identity = 50/84 (59.52%), Postives = 65/84 (77.38%), Query Frame = 0


Query: 12 KKSLRRSSSSGSGAPAVDVPKGYFTVYVGEGQKKRFVIPLSYLNEPSFQDLLSQAEEEFG 71
          KK L RS+ +GS A     PKG+  VYVGE QKKR+++P+SYLN+PSFQ LLS++EEEFG
Sbjct: 11 KKILSRSTGAGSAA-----PKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSKSEEEFG 70

Query: 72 YDHPMGGITIPSSEDLFLDLVRSL 96
          +DHPMGG+TIP  ED F+++   L
Sbjct: 71 FDHPMGGLTIPCPEDTFINVTSRL 89

[Close]

BLAST of Sed0026210 vs. TAIR 10
Match: AT5G18020.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 105.1 bits (261), Expect = 3.2e-23
Identity = 48/80 (60.00%), Postives = 64/80 (80.00%), Query Frame = 0


Query: 12 KKSLRRSSSSGSGAPAVDVPKGYFTVYVGEGQKKRFVIPLSYLNEPSFQDLLSQAEEEFG 71
          KK L RS+++ S A     PKG+  VYVGE QKKR+++P+SYLN+PSFQ LLS++EEEFG
Sbjct: 11 KKILSRSTTAASAA-----PKGFLAVYVGESQKKRYLVPISYLNQPSFQALLSKSEEEFG 70

Query: 72 YDHPMGGITIPSSEDLFLDL 92
          +DHPMGG+TIP  ED F+++
Sbjct: 71 FDHPMGGLTIPCPEDTFINV 85

[Close]

BLAST of Sed0026210 vs. TAIR 10
Match: AT5G18050.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 104.8 bits (260), Expect = 4.1e-23
Identity = 49/84 (58.33%), Postives = 65/84 (77.38%), Query Frame = 0


Query: 12 KKSLRRSSSSGSGAPAVDVPKGYFTVYVGEGQKKRFVIPLSYLNEPSFQDLLSQAEEEFG 71
          KK L RS+++ S A     PKG+  VYVGE QKKR+++PLSYLN+PSFQ LLS++E+EFG
Sbjct: 11 KKILSRSTAAVSAA-----PKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEDEFG 70

Query: 72 YDHPMGGITIPSSEDLFLDLVRSL 96
          +DHPMGG+TIP  ED F+++   L
Sbjct: 71 FDHPMGGLTIPCHEDTFINVTSRL 89

[Close]

BLAST of Sed0026210 vs. TAIR 10
Match: AT5G18060.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 104.8 bits (260), Expect = 4.1e-23
Identity = 51/85 (60.00%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 12 KKSLRRSSSSGSGAPAVDVPKGYFTVYVGEGQKKRFVIPLSYLNEPSFQDLLSQAEEEFG 71
          KK L RS+++ S AP    PKG+  VYVGE QKKR+++PLSYLN+PSFQ LLS++EEEFG
Sbjct: 11 KKILSRSAAAVS-AP----PKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEEEFG 70

Query: 72 YDHPMGGITIPSSEDLFLDLVRSLN 97
          +DHPMGG+TIP  ED F+++   L+
Sbjct: 71 FDHPMGGLTIPCPEDTFINVTSRLH 90

The following BLAST results are available for this feature:

BLAST of Sed0026210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952259.1	1.2e-40	86.73	auxin-induced protein 15A-like [Cucurbita moschata]	[more]
KAG6572087.1	3.5e-40	84.69	hypothetical protein SDJN03_28815, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022969518.1	3.5e-40	87.00	auxin-induced protein X10A-like [Cucurbita maxima]	[more]
XP_023529827.1	6.0e-40	85.71	auxin-induced protein 15A-like [Cucurbita pepo subsp. pepo]	[more]
XP_023554217.1	7.8e-40	83.67	auxin-induced protein 15A-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0026210 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P33080	1.9e-25	59.79	Auxin-induced protein X10A OS=Glycine max OX=3847 PE=2 SV=1	[more]
P33081	5.6e-25	62.50	Auxin-induced protein 15A OS=Glycine max OX=3847 PE=2 SV=1	[more]
P32295	1.3e-24	61.46	Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata OX=3916 ...	[more]
P33083	1.6e-24	62.50	Auxin-induced protein 6B OS=Glycine max OX=3847 PE=2 SV=1	[more]
P33082	1.6e-24	60.42	Auxin-induced protein X15 OS=Glycine max OX=3847 PE=2 SV=1	[more]

BLAST of Sed0026210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GL62	5.8e-41	86.73	auxin-induced protein 15A-like OS=Cucurbita moschata OX=3662 GN=LOC111454989 PE=...	[more]
A0A6J1I180	1.7e-40	87.00	auxin-induced protein X10A-like OS=Cucurbita maxima OX=3661 GN=LOC111468494 PE=3...	[more]
A0A6J1GL57	1.9e-39	87.13	auxin-induced protein X10A-like OS=Cucurbita moschata OX=3662 GN=LOC111454983 PE...	[more]
A0A6J1I054	4.2e-39	82.65	auxin-induced protein 15A-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1C5R3	5.4e-39	85.00	auxin-induced protein 15A-like OS=Momordica charantia OX=3673 GN=LOC111007633 PE...	[more]

BLAST of Sed0026210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38840.1	8.6e-29	56.57	SAUR-like auxin-responsive protein family	[more]
AT5G18080.1	4.9e-24	59.52	SAUR-like auxin-responsive protein family	[more]
AT5G18020.1	3.2e-23	60.00	SAUR-like auxin-responsive protein family	[more]
AT5G18050.1	4.1e-23	58.33	SAUR-like auxin-responsive protein family	[more]
AT5G18060.1	4.1e-23	60.00	SAUR-like auxin-responsive protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 15..95 e-value: 6.3E-23 score: 80.8
None	No IPR available	PANTHER	PTHR31929:SF69	SUBFAMILY NOT NAMED	coord: 11..94
None	No IPR available	PANTHER	PTHR31929	SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED	coord: 11..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0026210.1	Sed0026210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin