Sed0026173 (gene) Chayote v1

Overview
NameSed0026173
Typegene
OrganismSechium edule (Chayote v1)
Description30S ribosomal protein S20
LocationLG05: 37440411 .. 37443056 (+)
RNA-Seq ExpressionSed0026173
SyntenySed0026173
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCACCTTCAATTACTTGCTTCGCTCTTCCTTCTAAGTTCACAAATCTTTCCCTCAAATCTCTCAGTTTCTCCTCCAACATTTCAGATTCTGCCTTCTCCAATGGTGATTTCTTATGGATTTCCTTTTTTCCTTTATCTTCTTCTTTGGAAGAGTTTCTTAATTTTGCTTTGTTGTTGATTTTGGAGCAGGGTGCGTGTCCATGAGTAAAGCTCAGAGGCCACTTCGTTACTTTGTGGTTTGCGAGGCGGCTCCCACTAGAAAGGCTGAGAGCTCGCCAGGCTGAGAAACGGCGGCTTTACAACAAAGCCAGGAAATCTGAAATCAAAACCAGGATCAAGAAGGTAACCTAACTTTGGCCGGTTTTTAGATCTTTTGTTCTTCAAGTCCGCTGGAAAGAATTTGATGAAATCCTTATCTTGTGAAATTGAAAATGAATATTGTGAATCTGTTGATCGTGTGGAAAATAAAAATTGGTGTTCATGCTTTTAGGCTCTGTGTAAGAATGATGCAGTCTAAGAATTGGTTTCATATTTTGTAGAGTATTTGCTTTTGGCACTGAAAAGTTGAATTTATTGGGGATGGGGGATTTTAACCTATAATCTCTCGTTTACTAGGTTATATACATCATGCCACTCGAGTCAAGTTTTGAAATGTTGGCTTACTTATTAGCTATGTTTAATAAATCATGCCGAGTTTTTTACCCCTGTTTCTAAAAAAAAGCATGCCGAGTTTTGTAAACTATAAAGAGTATTGTTCAATAACGTTGGTTTTTGAATTTGGCTAAAAAACAAATGGTTATCAAATGAGGCTTAGCAGTTGAAGGTTGATTATTTTGTTCTCCAAGGTCAATGGTAACTTTCTGTCTTGGATGCCTTGTTGTTGAATTGTGGTACTGGGTATGAAAATCTGTATCAATTGAAGTTCTTGGTTTTTAAAATTAGTTAACACTACTCAACCACAAAAAAAGATATGAGACTACAGTGGCTACTACAGAAAAGTCTAGGCAACCAAACTAAGTTTCAATGTATGTAGAGAAGTTTATATTTAAGTTTTAACTCAGACTCTTAATATATATTGTATACTGTGAACTATCAAGCATGCTGACTTGATGAAGAATTGGAAAATGACTCCAAAAAACGGCGGCTTTACAACACCTCGGTTATGCTAGAGATAGGTCAGGTATATATGATAGAGATGATTGGATATTCTTGTCCAGTGGTGAACTGCTATGGCGTAAACCTTTCGGATATGTTAGAGTTAGGTTTTCTGGTTGGTAAAAACCAAAATTTAACTAATCACAATCACCTCGGTTTATAAATGAACCTTTTCAAGACCAGTAGTGTCTTTGAATGGGCTTTGGCTAGTCGCTTGTATTAATTGTTACTGTTTCACTTTGGAGGCAAAAAGAGGATTCTTTCTTTCCCTTTTGGTGCCTCCAACGGAGTATTTAATTTTGTTTGCAAGTCAAATATGGTCATGTAATAACAAGGGATTAGAAGGGAAATGAATTCAAGTCATAACCATGTTTCTAAGATTTAATATCCTATGAGTTATCTTTGCACCAAAATACACTAGAGTTGGCAGTTGTGCTATAAGAATAGTTGAGGTGTACGCAAGTTAACTCAATCACTTTTGAATATAAAAAAGTATGTTTGTATGCTTTAGTCGTTCTTCCAAGAAAACAGAAGTGTTGTGGCTTAATGTTTCAAAATTTTCTTTTGGGAAGCTTGATTGGCAAAGAGTAGGGGGAGAACCTTCCTAGGGTAGGAAACATATTTGGATCAGCTATCAAATGTTTTCTAGTTTATTTGATCCTTTTCGTGCTTTGTTTAATTTTCTTTTGGTAAATATTCGTTCTGATATTTATGCCAATTAGAGAACCTTTTTGTCTCTTTGGTTTTTGAAAGTCATCCCTGTGTATGTCTTCTTCTATTGAATAAAACCTTTGGGAAAATACTTTTTGGTTCTTAAGTTTTGAGTATAGTTTCTATTTAGTCCAATGCTACATTTTTACTTCTAACTTTTGAGTTTAGTTTCAATTTGATCTTTAGGTTTAAAAATGTTAGGTTGCCAGTATGCCTTCATCTTCCTGGTTTTTGTTCGCTTATGCTATTCTACTAGACTCTAGAATATTGCCTATCTTTATCTTTTCTATGGACCGAGAAAATCACAATTGTTATGTGTCAGTAGAGAAATTTTTGGTTAAAAGTTTAGTTCTTAATACATATTTTTCAATTGTTTGCAATTGATACTGTTTATGTCTCCTTGATCTAAATTTAGATGCTTATGTATTATCCTTGCTCTTGTATATTGTCAGAAAATATGGGGAGAAAGAAAAGATTTCTGTTTCTTACTGATTTAATCATATCCTTGTCTTCATAACGACGATTTCTCTCACATGATTCCAGGCTTTGGAAGCTTTGGATGACCTCAAGAAGAAACCTGAAGCACAATCAGAGGAAGTCTTGCCGATCGAGAAGCTCATCACAGAAGCATTCTCAGTGATCGACAAAGCCGTGAAAGTGGGAACATTGTACCGGAACACTGCAGCACGTCGAAAATCTCGGCTTGCCAGACGAAAGAAAGCTGTAGAAATCCAGCATGGATGGTACACCCCTGCTTCACCAGCAGCTGCCTAA

mRNA sequence

ATGGCGGCACCTTCAATTACTTGCTTCGCTCTTCCTTCTAAGTTCACAAATCTTTCCCTCAAATCTCTCAGTTTCTCCTCCAACATTTCAGATTCTGCCTTCTCCAATGGGTGCGTGTCCATGAGTAAAGCTCAGAGGCCACTTCGTTACTTTGTGGTTTGCGAGGCGGCTGAGAAACGGCGGCTTTACAACAAAGCCAGGAAATCTGAAATCAAAACCAGGATCAAGAAGGCTTTGGAAGCTTTGGATGACCTCAAGAAGAAACCTGAAGCACAATCAGAGGAAGTCTTGCCGATCGAGAAGCTCATCACAGAAGCATTCTCAGTGATCGACAAAGCCGTGAAAGTGGGAACATTGTACCGGAACACTGCAGCACGTCGAAAATCTCGGCTTGCCAGACGAAAGAAAGCTGTAGAAATCCAGCATGGATGGTACACCCCTGCTTCACCAGCAGCTGCCTAA

Coding sequence (CDS)

ATGGCGGCACCTTCAATTACTTGCTTCGCTCTTCCTTCTAAGTTCACAAATCTTTCCCTCAAATCTCTCAGTTTCTCCTCCAACATTTCAGATTCTGCCTTCTCCAATGGGTGCGTGTCCATGAGTAAAGCTCAGAGGCCACTTCGTTACTTTGTGGTTTGCGAGGCGGCTGAGAAACGGCGGCTTTACAACAAAGCCAGGAAATCTGAAATCAAAACCAGGATCAAGAAGGCTTTGGAAGCTTTGGATGACCTCAAGAAGAAACCTGAAGCACAATCAGAGGAAGTCTTGCCGATCGAGAAGCTCATCACAGAAGCATTCTCAGTGATCGACAAAGCCGTGAAAGTGGGAACATTGTACCGGAACACTGCAGCACGTCGAAAATCTCGGCTTGCCAGACGAAAGAAAGCTGTAGAAATCCAGCATGGATGGTACACCCCTGCTTCACCAGCAGCTGCCTAA

Protein sequence

MAAPSITCFALPSKFTNLSLKSLSFSSNISDSAFSNGCVSMSKAQRPLRYFVVCEAAEKRRLYNKARKSEIKTRIKKALEALDDLKKKPEAQSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAVEIQHGWYTPASPAAA
Homology
[Close]
BLAST of Sed0026173 vs. NCBI nr
Match: KAG6607892.1 (30S ribosomal protein S20, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037419.1 30S ribosomal protein S20, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 230.7 bits (587), Expect = 8.4e-57
Identity = 136/184 (73.91%), Postives = 143/184 (77.72%), Query Frame = 0 

Query: 1   MAAPSITCFALPSKFTNLS----------------LKSLSFSSNISDSAFSNGCVSMSKA 60
           MAA S +CFALPSKF NLS                LKSLSFSSNIS SAFSNGC+SMS A
Sbjct: 1   MAAASFSCFALPSKFGNLSLNASSSCLPVSSSSLALKSLSFSSNISVSAFSNGCLSMSGA 60

Query: 61  QRPLRYFVVCEA---------------AEKRRLYNKARKSEIKTRIKKALEALDDLKKKP 120
           QRPLRY VVCEA               AEKRR YNKARKSEI+TR+KKA+EALDDLKKKP
Sbjct: 61  QRPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKP 120

Query: 121 EAQSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAVEIQHGWYTPAS 154
           EAQSEEVLPIEKLI EA+SVIDKAVKVGTL+RNTAA RKSRLARRKKAVEI HGWYTPAS
Sbjct: 121 EAQSEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPAS 180

[Close]
BLAST of Sed0026173 vs. NCBI nr
Match: XP_022941386.1 (30S ribosomal protein S20, chloroplastic [Cucurbita moschata])

HSP 1 Score: 230.7 bits (587), Expect = 8.4e-57
Identity = 136/184 (73.91%), Postives = 143/184 (77.72%), Query Frame = 0 

Query: 1   MAAPSITCFALPSKFTNLS----------------LKSLSFSSNISDSAFSNGCVSMSKA 60
           MAA S +CFALPSKF NLS                LKSLSFSSNIS SAFSNGC+SMS A
Sbjct: 1   MAAASFSCFALPSKFGNLSLNASPSCLPVSSSSLALKSLSFSSNISVSAFSNGCLSMSGA 60

Query: 61  QRPLRYFVVCEA---------------AEKRRLYNKARKSEIKTRIKKALEALDDLKKKP 120
           QRPLRY VVCEA               AEKRR YNKARKSEI+TR+KKA+EALDDLKKKP
Sbjct: 61  QRPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKP 120

Query: 121 EAQSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAVEIQHGWYTPAS 154
           EAQSEEVLPIEKLI EA+SVIDKAVKVGTL+RNTAA RKSRLARRKKAVEI HGWYTPAS
Sbjct: 121 EAQSEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPAS 180

[Close]
BLAST of Sed0026173 vs. NCBI nr
Match: XP_022976587.1 (30S ribosomal protein S20, chloroplastic-like [Cucurbita maxima] >KAG6591939.1 30S ribosomal protein S20, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024812.1 30S ribosomal protein S20, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 228.8 bits (582), Expect = 3.2e-56
Identity = 133/182 (73.08%), Postives = 142/182 (78.02%), Query Frame = 0 

Query: 2   AAPSITCFALPSKFTNLS----------------LKSLSFSSNISDSAFSNGCVSMSKAQ 61
           A   I+CFALPSKF NLS                L+SLSFSSN+S SAFSNGC+S+SKAQ
Sbjct: 3   ATAIISCFALPSKFRNLSLNASSSSMPLSPSSSTLRSLSFSSNVSVSAFSNGCLSISKAQ 62

Query: 62  RPLRYFVVCEA--------------AEKRRLYNKARKSEIKTRIKKALEALDDLKKKPEA 121
           RP RY VVCEA              AEKRR+YNKARKSEIKTR+KK +EALDDLKKKPEA
Sbjct: 63  RPFRYSVVCEAAPKKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKKPEA 122

Query: 122 QSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAVEIQHGWYTPASPA 154
           QSEEVLPIEKLI EAFSVIDKAVKVGTL+RNTAARRKSRLARRKKAVEI HGWYTPASPA
Sbjct: 123 QSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPASPA 182

[Close]
BLAST of Sed0026173 vs. NCBI nr
Match: XP_022935732.1 (30S ribosomal protein S20, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 228.8 bits (582), Expect = 3.2e-56
Identity = 133/182 (73.08%), Postives = 142/182 (78.02%), Query Frame = 0 

Query: 2   AAPSITCFALPSKFTNLS----------------LKSLSFSSNISDSAFSNGCVSMSKAQ 61
           A   I+CFALPSKF NLS                L+SLSFSSN+S SAFSNGC+S+SKAQ
Sbjct: 3   ATAIISCFALPSKFRNLSLNASSSSMLLSPSSSTLRSLSFSSNVSVSAFSNGCLSISKAQ 62

Query: 62  RPLRYFVVCEA--------------AEKRRLYNKARKSEIKTRIKKALEALDDLKKKPEA 121
           RP RY VVCEA              AEKRR+YNKARKSEIKTR+KK +EALDDLKKKPEA
Sbjct: 63  RPFRYSVVCEAAPKKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKKPEA 122

Query: 122 QSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAVEIQHGWYTPASPA 154
           QSEEVLPIEKLI EAFSVIDKAVKVGTL+RNTAARRKSRLARRKKAVEI HGWYTPASPA
Sbjct: 123 QSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPASPA 182

[Close]
BLAST of Sed0026173 vs. NCBI nr
Match: XP_022981947.1 (30S ribosomal protein S20, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 226.9 bits (577), Expect = 1.2e-55
Identity = 132/184 (71.74%), Postives = 143/184 (77.72%), Query Frame = 0 

Query: 1   MAAPSITCFALPSKFTNLS----------------LKSLSFSSNISDSAFSNGCVSMSKA 60
           MAA S +CFALPSKF NLS                L+SLSFSSN+S SAFS+GC+SMS A
Sbjct: 1   MAAASFSCFALPSKFGNLSLNASSSCLPVSSSSLALRSLSFSSNVSVSAFSDGCLSMSGA 60

Query: 61  QRPLRYFVVCEA---------------AEKRRLYNKARKSEIKTRIKKALEALDDLKKKP 120
           QRPLRY VVCEA               AEKRR YNKARKSEI+TR+KKA+EALDDLKKKP
Sbjct: 61  QRPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKP 120

Query: 121 EAQSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAVEIQHGWYTPAS 154
           EAQSEEVLP+EKLI EA+SVIDKAVKVGTL+RNTAA RKSRLARRKKAVEI HGWYTPAS
Sbjct: 121 EAQSEEVLPVEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPAS 180

[Close]
BLAST of Sed0026173 vs. ExPASy Swiss-Prot
Match: P82130 (30S ribosomal protein S20, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS20 PE=1 SV=2)

HSP 1 Score: 148.3 bits (373), Expect = 7.2e-35
Identity = 93/173 (53.76%), Postives = 110/173 (63.58%), Query Frame = 0 

Query: 1   MAAPSITCFALPSK----------FTNLSLKSLSFSSNISDSAFSNGCVSMSKAQRPLRY 60
           MA  S  C ++ SK          F N SLK L+FS+N+S   FS GC S+   QR   +
Sbjct: 6   MACVSSQCLSISSKLHNLSFSSTQFPNSSLKPLTFSANLSQPLFSQGCSSLGSFQR-RGF 65

Query: 61  FVVCEA---------------AEKRRLYNKARKSEIKTRIKKALEALDDLKKKPEAQSEE 120
            VVCE                AE RRL NKARKSE+KTR++K  EALD LKKK  A +EE
Sbjct: 66  SVVCEVATLKKADSAAKRTRQAETRRLRNKARKSEVKTRMRKVFEALDALKKKSGASTEE 125

Query: 121 VLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAVEIQHGWYTPA 149
           ++PI+ LI EA+S IDKAV  GTL+RNTAARRKSRLAR KK VEI HGWYTP+
Sbjct: 126 LVPIDNLIAEAYSAIDKAVVKGTLHRNTAARRKSRLARNKKVVEIHHGWYTPS 177

[Close]
BLAST of Sed0026173 vs. ExPASy Swiss-Prot
Match: Q9ASV6 (30S ribosomal protein S20, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS20 PE=2 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 4.6e-34
Identity = 87/173 (50.29%), Postives = 116/173 (67.05%), Query Frame = 0 

Query: 1   MAAPSITCFALPSKFTNLSLKSLSFSSNISDSAFSNGCVSMSK----AQRPLRYFVVCEA 60
           ++   I+C +  S F+N    S + SS++S S   + CV+ S      Q+P+R  +VCEA
Sbjct: 21  LSLKGISCSSPSSSFSNRRGASATLSSSLSFSQSVSQCVAFSTGNLWVQKPMRQLIVCEA 80

Query: 61  ----------------AEKRRLYNKARKSEIKTRIKKALEALDDLKKKPEAQSEEVLPIE 120
                           AEKRR+YNK++KSE +TR+KK LEAL+ LKKK +AQ++E++ +E
Sbjct: 81  AAPTKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEALEGLKKKTDAQADEIVTVE 140

Query: 121 KLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAVEIQHGWYTPASPAAA 154
           KLI EA+S IDKAVKV  L++NT ARRKSRLARRKKAVEI HGWY P + AAA
Sbjct: 141 KLIGEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEIHHGWYVPDAAAAA 193

[Close]
BLAST of Sed0026173 vs. ExPASy Swiss-Prot
Match: B0C2C8 (30S ribosomal protein S20 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=rpsT PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-08
Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = 0 

Query: 57  AEKRRLYNKARKSEIKTRIKKALEALDDLKKKPEAQSEEVLPIEKLITEAFSVIDKAVKV 116
           AE+ RL NKA KS IKT  K+   A+DD K  P    +++  I+  ++  +S IDKAVKV
Sbjct: 14  AERNRLQNKAYKSAIKTFTKRFQAAVDDYKSNP--SDDQLAAIQNEMSVTYSKIDKAVKV 73

Query: 117 GTLYRNTAARRKSRLARRKKA 138
           G  +RNT AR+K+ LAR  KA
Sbjct: 74  GVFHRNTGARKKAGLARILKA 92

[Close]
BLAST of Sed0026173 vs. ExPASy Swiss-Prot
Match: B1XHW6 (30S ribosomal protein S20 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=rpsT PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.5e-08
Identity = 35/82 (42.68%), Postives = 52/82 (63.41%), Query Frame = 0 

Query: 55  EAAEKRRLYNKARKSEIKTRIKKALEALDDLKKKPEAQSEEVLPIEKLITEAFSVIDKAV 114
           + AE+ RL NK+ KS +KT  KK L+A++     P A ++     +K ++  +S IDKAV
Sbjct: 12  QTAERNRLRNKSYKSAVKTLTKKCLQAIEQYAAAPSADAQ--AEAQKYLSATYSKIDKAV 71

Query: 115 KVGTLYRNTAARRKSRLARRKK 137
           K G  + NTAAR+K+RLA+  K
Sbjct: 72  KRGVYHHNTAARKKARLAKEFK 91

[Close]
BLAST of Sed0026173 vs. ExPASy Swiss-Prot
Match: B7KG02 (30S ribosomal protein S20 OS=Gloeothece citriformis (strain PCC 7424) OX=65393 GN=rpsT PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.3e-07
Identity = 35/84 (41.67%), Postives = 55/84 (65.48%), Query Frame = 0 

Query: 55  EAAEKRRLYNKARKSEIKTRIKKALEALDDLKKKPEAQSEEVLPIEKLITEAFSVIDKAV 114
           + AE+ RL NK+ KS +KT +KK   A++D K  P  ++++   +++ ++ A+S IDKAV
Sbjct: 12  QIAERNRLRNKSYKSAVKTLMKKYYAAVEDYKANPSEEAKKA--VDQAMSAAYSKIDKAV 71

Query: 115 KVGTLYRNTAARRKSRLARRKKAV 139
           K   L+RN  AR+KS+LA   K V
Sbjct: 72  KCRILHRNNGARKKSQLANALKQV 93

[Close]
BLAST of Sed0026173 vs. ExPASy TrEMBL
Match: A0A6J1FKZ1 (30S ribosomal protein S20, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111446691 PE=3 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 4.1e-57
Identity = 136/184 (73.91%), Postives = 143/184 (77.72%), Query Frame = 0 

Query: 1   MAAPSITCFALPSKFTNLS----------------LKSLSFSSNISDSAFSNGCVSMSKA 60
           MAA S +CFALPSKF NLS                LKSLSFSSNIS SAFSNGC+SMS A
Sbjct: 1   MAAASFSCFALPSKFGNLSLNASPSCLPVSSSSLALKSLSFSSNISVSAFSNGCLSMSGA 60

Query: 61  QRPLRYFVVCEA---------------AEKRRLYNKARKSEIKTRIKKALEALDDLKKKP 120
           QRPLRY VVCEA               AEKRR YNKARKSEI+TR+KKA+EALDDLKKKP
Sbjct: 61  QRPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKP 120

Query: 121 EAQSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAVEIQHGWYTPAS 154
           EAQSEEVLPIEKLI EA+SVIDKAVKVGTL+RNTAA RKSRLARRKKAVEI HGWYTPAS
Sbjct: 121 EAQSEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPAS 180

[Close]
BLAST of Sed0026173 vs. ExPASy TrEMBL
Match: A0A6J1IG57 (30S ribosomal protein S20, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111476939 PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.5e-56
Identity = 133/182 (73.08%), Postives = 142/182 (78.02%), Query Frame = 0 

Query: 2   AAPSITCFALPSKFTNLS----------------LKSLSFSSNISDSAFSNGCVSMSKAQ 61
           A   I+CFALPSKF NLS                L+SLSFSSN+S SAFSNGC+S+SKAQ
Sbjct: 3   ATAIISCFALPSKFRNLSLNASSSSMPLSPSSSTLRSLSFSSNVSVSAFSNGCLSISKAQ 62

Query: 62  RPLRYFVVCEA--------------AEKRRLYNKARKSEIKTRIKKALEALDDLKKKPEA 121
           RP RY VVCEA              AEKRR+YNKARKSEIKTR+KK +EALDDLKKKPEA
Sbjct: 63  RPFRYSVVCEAAPKKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKKPEA 122

Query: 122 QSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAVEIQHGWYTPASPA 154
           QSEEVLPIEKLI EAFSVIDKAVKVGTL+RNTAARRKSRLARRKKAVEI HGWYTPASPA
Sbjct: 123 QSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPASPA 182

[Close]
BLAST of Sed0026173 vs. ExPASy TrEMBL
Match: A0A6J1F6F1 (30S ribosomal protein S20, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442556 PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.5e-56
Identity = 133/182 (73.08%), Postives = 142/182 (78.02%), Query Frame = 0 

Query: 2   AAPSITCFALPSKFTNLS----------------LKSLSFSSNISDSAFSNGCVSMSKAQ 61
           A   I+CFALPSKF NLS                L+SLSFSSN+S SAFSNGC+S+SKAQ
Sbjct: 3   ATAIISCFALPSKFRNLSLNASSSSMLLSPSSSTLRSLSFSSNVSVSAFSNGCLSISKAQ 62

Query: 62  RPLRYFVVCEA--------------AEKRRLYNKARKSEIKTRIKKALEALDDLKKKPEA 121
           RP RY VVCEA              AEKRR+YNKARKSEIKTR+KK +EALDDLKKKPEA
Sbjct: 63  RPFRYSVVCEAAPKKADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKKPEA 122

Query: 122 QSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAVEIQHGWYTPASPA 154
           QSEEVLPIEKLI EAFSVIDKAVKVGTL+RNTAARRKSRLARRKKAVEI HGWYTPASPA
Sbjct: 123 QSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPASPA 182

[Close]
BLAST of Sed0026173 vs. ExPASy TrEMBL
Match: A0A6J1IVC5 (30S ribosomal protein S20, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111480940 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 5.8e-56
Identity = 132/184 (71.74%), Postives = 143/184 (77.72%), Query Frame = 0 

Query: 1   MAAPSITCFALPSKFTNLS----------------LKSLSFSSNISDSAFSNGCVSMSKA 60
           MAA S +CFALPSKF NLS                L+SLSFSSN+S SAFS+GC+SMS A
Sbjct: 1   MAAASFSCFALPSKFGNLSLNASSSCLPVSSSSLALRSLSFSSNVSVSAFSDGCLSMSGA 60

Query: 61  QRPLRYFVVCEA---------------AEKRRLYNKARKSEIKTRIKKALEALDDLKKKP 120
           QRPLRY VVCEA               AEKRR YNKARKSEI+TR+KKA+EALDDLKKKP
Sbjct: 61  QRPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKP 120

Query: 121 EAQSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAVEIQHGWYTPAS 154
           EAQSEEVLP+EKLI EA+SVIDKAVKVGTL+RNTAA RKSRLARRKKAVEI HGWYTPAS
Sbjct: 121 EAQSEEVLPVEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPAS 180

[Close]
BLAST of Sed0026173 vs. ExPASy TrEMBL
Match: A0A6J1CG14 (30S ribosomal protein S20, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111010468 PE=3 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 5.0e-55
Identity = 131/184 (71.20%), Postives = 142/184 (77.17%), Query Frame = 0 

Query: 1   MAAPSITCFALPSKFTNLS----------------LKSLSFSSNISDSAFSNGCVSMSKA 60
           MAA +ITCF++ SKF NLS                LKSL+FSSN+S  AFSNGC+SMS+A
Sbjct: 1   MAAAAITCFSISSKFRNLSLNASSSSFPASSSSSTLKSLTFSSNLSFCAFSNGCLSMSEA 60

Query: 61  QRPLRYFVVCEA---------------AEKRRLYNKARKSEIKTRIKKALEALDDLKKKP 120
           QRPLRY VVCEA               AEKRR+YNKARKSEIKTR+KK LEALDDLKKKP
Sbjct: 61  QRPLRYSVVCEAAPKKKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDDLKKKP 120

Query: 121 EAQSEEVLPIEKLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAVEIQHGWYTPAS 154
           EAQSEEVL IEKLI EA+SVIDKAVKVGTL+RNTAARRKSRLARRKKAVEI HGWY PAS
Sbjct: 121 EAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYAPAS 180

[Close]
BLAST of Sed0026173 vs. TAIR 10
Match: AT3G15190.1 (chloroplast 30S ribosomal protein S20, putative )

HSP 1 Score: 145.6 bits (366), Expect = 3.3e-35
Identity = 87/173 (50.29%), Postives = 116/173 (67.05%), Query Frame = 0 

Query: 1   MAAPSITCFALPSKFTNLSLKSLSFSSNISDSAFSNGCVSMSK----AQRPLRYFVVCEA 60
           ++   I+C +  S F+N    S + SS++S S   + CV+ S      Q+P+R  +VCEA
Sbjct: 21  LSLKGISCSSPSSSFSNRRGASATLSSSLSFSQSVSQCVAFSTGNLWVQKPMRQLIVCEA 80

Query: 61  ----------------AEKRRLYNKARKSEIKTRIKKALEALDDLKKKPEAQSEEVLPIE 120
                           AEKRR+YNK++KSE +TR+KK LEAL+ LKKK +AQ++E++ +E
Sbjct: 81  AAPTKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEALEGLKKKTDAQADEIVTVE 140

Query: 121 KLITEAFSVIDKAVKVGTLYRNTAARRKSRLARRKKAVEIQHGWYTPASPAAA 154
           KLI EA+S IDKAVKV  L++NT ARRKSRLARRKKAVEI HGWY P + AAA
Sbjct: 141 KLIGEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEIHHGWYVPDAAAAA 193

The following BLAST results are available for this feature:
BLAST of Sed0026173 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6607892.18.4e-5773.9130S ribosomal protein S20, chloroplastic, partial [Cucurbita argyrosperma subsp.... [more]
XP_022941386.18.4e-5773.9130S ribosomal protein S20, chloroplastic [Cucurbita moschata][more]
XP_022976587.13.2e-5673.0830S ribosomal protein S20, chloroplastic-like [Cucurbita maxima] >KAG6591939.1 3... [more]
XP_022935732.13.2e-5673.0830S ribosomal protein S20, chloroplastic-like [Cucurbita moschata][more]
XP_022981947.11.2e-5571.7430S ribosomal protein S20, chloroplastic-like [Cucurbita maxima][more]
BLAST of Sed0026173 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P821307.2e-3553.7630S ribosomal protein S20, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS20 P... [more]
Q9ASV64.6e-3450.2930S ribosomal protein S20, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS2... [more]
B0C2C82.0e-0848.1530S ribosomal protein S20 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 ... [more]
B1XHW67.5e-0842.6830S ribosomal protein S20 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / P... [more]
B7KG021.3e-0741.6730S ribosomal protein S20 OS=Gloeothece citriformis (strain PCC 7424) OX=65393 G... [more]
BLAST of Sed0026173 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FKZ14.1e-5773.9130S ribosomal protein S20, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1IG571.5e-5673.0830S ribosomal protein S20, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1F6F11.5e-5673.0830S ribosomal protein S20, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6J1IVC55.8e-5671.7430S ribosomal protein S20, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1CG145.0e-5571.2030S ribosomal protein S20, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11... [more]
BLAST of Sed0026173 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G15190.13.3e-3550.29chloroplast 30S ribosomal protein S20, putative [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 68..88
NoneNo IPR availablePANTHERPTHR33398:SF530S RIBOSOMAL PROTEIN S20, CHLOROPLASTICcoord: 15..152
IPR002583Ribosomal protein S20PFAMPF01649Ribosomal_S20pcoord: 56..134
e-value: 4.1E-18
score: 65.8
IPR002583Ribosomal protein S20PANTHERPTHR3339830S RIBOSOMAL PROTEIN S20coord: 15..152
IPR002583Ribosomal protein S20HAMAPMF_00500Ribosomal_S20coord: 41..137
score: 12.801159
IPR036510Ribosomal protein S20 superfamilyGENE3D1.20.58.110Ribosomal protein S20coord: 54..153
e-value: 4.6E-32
score: 112.4
IPR036510Ribosomal protein S20 superfamilySUPERFAMILY46992Ribosomal protein S20coord: 56..149

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0026173.1Sed0026173.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0070181 small ribosomal subunit rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding