Sed0026157 (gene) Chayote v1

Overview


Name	Sed0026157
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Potassium voltage-gated channel subfamily C member 4
Location	LG09: 9050 .. 10128 (-)
RNA-Seq Expression	Sed0026157
Synteny	Sed0026157

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGATATTTATACACCACCGACTCTTCAGACTTTGGATGCCCACAAGTTTTTGCTTATATATTCAAGTCTCTCTCTCCTGTGTTTTGTCTGTGAGAAATTAATTGGAAAAGAAAAAGAGAAGAGATATCAATGGTGGATCGTGAGATGGTTTGTTGCATGTGCGGCGACATCGGCTTCCCTGAGAAACTGTTCCGATGCAACAACTGCCGCAACCGCTTTCAACACTCGTATATATATATATATACATATTCTTTCTTTTTCTTTTATTGAGCTAAATTTTGTTTTTAATTATCAATATTATTTGCAGGTACTGCAGTAATTACTACACTGAATCCGCGGAACCAATTGATGTGTGTGATTGGTGCCACTCTGAAGGCCGCACTTCCTCCGGGAGACTTCCGCCGCCGCCGCCGCCCCCTACCGCCGCCGCCCGCTCCGAATATTCCGGCGACAGGACCATCAAGAACCACCATCATGCCGACAAACCCAAACACGCCTCCTCGCCCAGGCCCACCACCCGCAGGTACAAGCTTCTAAAGGACGTCATGTGCTAAAATAAAAACAGAGCAAAACTACCCACTTGTTCGTAACTATGGTGTGTACTAACCACCACATGAGTCGCGTCTTTCTGACTAATAGAAATAAAAATGCTGGATGAAAAATACATAAATAAAAAAAATATGGCTCATGTCGTGGTAAGTATACATACCATACTTATCGTTAAGTTAAAAGTTGGTAGGCTTTTGCTAGATGGATAAACACCTTTTACATAGCCCCTCCCATCCACTTCCTTTTTTTTTCTTTCTTTCTCAAATGTTATATTAATAAAAACGTATATATCTATAAGTATAGGTTGCTTTTGAGTGTGCTGATTGGGTTTATATGTAGAAATACTCCATGAATTTTGCTTTCTTTTATATATAATGTGTTATGAATATAATATCATATAGTTTTCGCTTTACAACTCCAAATAAACTTAATGTTATTGTAATGCATCATCTTTCTCTCTTACTCAATTTCCGTACAAATCTATAATCAACTTTTAACATTCGGGTGGCGTTTATTCTACATTCTTTCGC

mRNA sequence

GGATATTTATACACCACCGACTCTTCAGACTTTGGATGCCCACAAGTTTTTGCTTATATATTCAAGTCTCTCTCTCCTGTGTTTTGTCTGTGAGAAATTAATTGGAAAAGAAAAAGAGAAGAGATATCAATGGTGGATCGTGAGATGGTTTGTTGCATGTGCGGCGACATCGGCTTCCCTGAGAAACTGTTCCGATGCAACAACTGCCGCAACCGCTTTCAACACTCGTACTGCAGTAATTACTACACTGAATCCGCGGAACCAATTGATGTGTGTGATTGGTGCCACTCTGAAGGCCGCACTTCCTCCGGGAGACTTCCGCCGCCGCCGCCGCCCCCTACCGCCGCCGCCCGCTCCGAATATTCCGGCGACAGGACCATCAAGAACCACCATCATGCCGACAAACCCAAACACGCCTCCTCGCCCAGGCCCACCACCCGCAGGTACAAGCTTCTAAAGGACGTCATGTGCTAAAATAAAAACAGAGCAAAACTACCCACTTGTTCGTAACTATGGTGTGTACTAACCACCACATGAGTCGCGTCTTTCTGACTAATAGAAATAAAAATGCTGGATGAAAAATACATAAATAAAAAAAATATGGCTCATGTCGTGGTAAGTATACATACCATACTTATCGTTAAGTTAAAAGTTGGTAGGCTTTTGCTAGATGGATAAACACCTTTTACATAGCCCCTCCCATCCACTTCCTTTTTTTTTCTTTCTTTCTCAAATGTTATATTAATAAAAACGTATATATCTATAAGTATAGGTTGCTTTTGAGTGTGCTGATTGGGTTTATATGTAGAAATACTCCATGAATTTTGCTTTCTTTTATATATAATGTGTTATGAATATAATATCATATAGTTTTCGCTTTACAACTCCAAATAAACTTAATGTTATTGTAATGCATCATCTTTCTCTCTTACTCAATTTCCGTACAAATCTATAATCAACTTTTAACATTCGGGTGGCGTTTATTCTACATTCTTTCGC

Coding sequence (CDS)

ATGGTGGATCGTGAGATGGTTTGTTGCATGTGCGGCGACATCGGCTTCCCTGAGAAACTGTTCCGATGCAACAACTGCCGCAACCGCTTTCAACACTCGTACTGCAGTAATTACTACACTGAATCCGCGGAACCAATTGATGTGTGTGATTGGTGCCACTCTGAAGGCCGCACTTCCTCCGGGAGACTTCCGCCGCCGCCGCCGCCCCCTACCGCCGCCGCCCGCTCCGAATATTCCGGCGACAGGACCATCAAGAACCACCATCATGCCGACAAACCCAAACACGCCTCCTCGCCCAGGCCCACCACCCGCAGGTACAAGCTTCTAAAGGACGTCATGTGCTAA

Protein sequence

MVDREMVCCMCGDIGFPEKLFRCNNCRNRFQHSYCSNYYTESAEPIDVCDWCHSEGRTSSGRLPPPPPPPTAAARSEYSGDRTIKNHHHADKPKHASSPRPTTRRYKLLKDVMC

Homology

[Close]

BLAST of Sed0026157 vs. NCBI nr
Match: XP_004140491.1 (uncharacterized protein LOC101205257 [Cucumis sativus] >KGN46561.1 hypothetical protein Csa_005625 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 2.2e-38
Identity = 85/130 (65.38%), Postives = 94/130 (72.31%), Query Frame = 0


Query: 1   MVDREMVCCMCGDIGFPEKLFRCNNCRNRFQHSYCSNYYTESAEPIDVCDWCHSEGRT-- 60
           MVD ++VCCMCGDIGFP+KLF CN CRNRFQHSYCSNYY+ESAEPI+VCDWC  EGR+  
Sbjct: 1   MVDLQIVCCMCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSTS 60

Query: 61  ----SSGRLPPPPPPPTAA--ARSEYSGDRTIKNHHH---ADKPKH-----ASSPRPTTR 115
               SS R PP           RSEYSGD+ IK+HHH    +K KH      SSPRPTTR
Sbjct: 61  RSHGSSSRRPPSTGTNATGIMTRSEYSGDKLIKHHHHDSPTEKGKHGGAGSTSSPRPTTR 120

[Close]

BLAST of Sed0026157 vs. NCBI nr
Match: XP_008467003.1 (PREDICTED: uncharacterized protein LOC103504413 [Cucumis melo])

HSP 1 Score: 162.9 bits (411), Expect = 1.6e-36
Identity = 85/133 (63.91%), Postives = 94/133 (70.68%), Query Frame = 0


Query: 1   MVDREMVCCMCGDIGFPEKLFRCNNCRNRFQHSYCSNYYTESAEPIDVCDWCHSEGRTSS 60
           MVD ++VCCMCGDIGFP+KLF CN CRNRFQHSYCSNYY+ESAEPI+VCDWC  EGR++S
Sbjct: 1   MVDLQIVCCMCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSTS 60

Query: 61  GR------LPPPPPPPTAA----ARSEYSGDRTIKNHHHADKP----KHAS-----SPRP 115
            R         PP   T A    +RSEYS D+ IK HHH D P    KH       SPRP
Sbjct: 61  SRSHGSSSSRRPPSTGTNATGIMSRSEYSSDKLIK-HHHDDSPTEKGKHGGAGSTPSPRP 120

[Close]

BLAST of Sed0026157 vs. NCBI nr
Match: XP_022158531.1 (uncharacterized protein LOC111024997 [Momordica charantia])

HSP 1 Score: 161.0 bits (406), Expect = 6.1e-36
Identity = 82/133 (61.65%), Postives = 92/133 (69.17%), Query Frame = 0


Query: 1   MVDREMVCCMCGDIGFPEKLFRCNNCRNRFQHSYCSNYYTESAEPIDVCDWCHSEGRT-- 60
           MVD ++VCCMCGDIGFP+KLFRCN CRNRFQHSYCSNYY+ESAEPI+VCDWC  EGR+  
Sbjct: 1   MVDLQIVCCMCGDIGFPDKLFRCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSSS 60

Query: 61  ----SSGRLPPPPPPPTAA-----ARSEYSGDRTIKNHHH---ADKPKHAS-----SPRP 115
               SS +  PPPPP          RS+Y+  +      H   ADK KHA      SPRP
Sbjct: 61  RSHGSSSKKSPPPPPQAGGGAGIMTRSDYTTVKIKHGEDHTAAADKGKHAGVGGVPSPRP 120

[Close]

BLAST of Sed0026157 vs. NCBI nr
Match: XP_038875571.1 (uncharacterized protein LOC120067983 [Benincasa hispida])

HSP 1 Score: 160.6 bits (405), Expect = 7.9e-36
Identity = 84/132 (63.64%), Postives = 94/132 (71.21%), Query Frame = 0


Query: 1   MVDREMVCCMCGDIGFPEKLFRCNNCRNRFQHSYCSNYYTESAEPIDVCDWCHSEGRT-- 60
           MVD ++VCCMCGDIGFP+KLFRCN C NRFQHSYCSNYY+ESAEPI+VCDWC  EGRT  
Sbjct: 1   MVDLQIVCCMCGDIGFPDKLFRCNKCHNRFQHSYCSNYYSESAEPIEVCDWCQCEGRTSS 60

Query: 61  ----SSGRLPPPPPPPTAA--ARSEYSGDRTIKNHHH-----ADKPKHAS-----SPRPT 115
               SS R PP      A   +RSEYSG++ IK+HH       +K KH       SPRPT
Sbjct: 61  RSHGSSSRRPPSTGTNAAGLMSRSEYSGEK-IKHHHDDSATTIEKGKHGGAGSTPSPRPT 120

[Close]

BLAST of Sed0026157 vs. NCBI nr
Match: KAF3440050.1 (hypothetical protein FNV43_RR18328 [Rhamnella rubrinervis])

HSP 1 Score: 157.1 bits (396), Expect = 8.8e-35
Identity = 77/125 (61.60%), Postives = 90/125 (72.00%), Query Frame = 0


Query: 1   MVDREMVCCMCGDIGFPEKLFRCNNCRNRFQHSYCSNYYTESAEPIDVCDWCHSEGRT-- 60
           MVD + VCCMCGD+GFP+KLFRCN CRNRFQHSYCSNYY+E+AE I++CDWC SEG++  
Sbjct: 1   MVDHQTVCCMCGDVGFPDKLFRCNKCRNRFQHSYCSNYYSENAESIELCDWCQSEGKSTR 60

Query: 61  ---SSGRLPPPPPPPTAAARSEYSGDRTIKNHHHAD------KPKHASSPRPTTRRYKLL 115
              SS +    P   + + RSEYSGD+ IK H   D       P  A SPRPTTRRYKLL
Sbjct: 61  SHGSSSKRLAGPASDSVSNRSEYSGDK-IKQHDREDSSEKGKNPSGAPSPRPTTRRYKLL 120

[Close]

BLAST of Sed0026157 vs. ExPASy TrEMBL
Match: A0A0A0KFQ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G108590 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.1e-38
Identity = 85/130 (65.38%), Postives = 94/130 (72.31%), Query Frame = 0


Query: 1   MVDREMVCCMCGDIGFPEKLFRCNNCRNRFQHSYCSNYYTESAEPIDVCDWCHSEGRT-- 60
           MVD ++VCCMCGDIGFP+KLF CN CRNRFQHSYCSNYY+ESAEPI+VCDWC  EGR+  
Sbjct: 1   MVDLQIVCCMCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSTS 60

Query: 61  ----SSGRLPPPPPPPTAA--ARSEYSGDRTIKNHHH---ADKPKH-----ASSPRPTTR 115
               SS R PP           RSEYSGD+ IK+HHH    +K KH      SSPRPTTR
Sbjct: 61  RSHGSSSRRPPSTGTNATGIMTRSEYSGDKLIKHHHHDSPTEKGKHGGAGSTSSPRPTTR 120

[Close]

BLAST of Sed0026157 vs. ExPASy TrEMBL
Match: A0A1S3CSH8 (uncharacterized protein LOC103504413 OS=Cucumis melo OX=3656 GN=LOC103504413 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 7.7e-37
Identity = 85/133 (63.91%), Postives = 94/133 (70.68%), Query Frame = 0


Query: 1   MVDREMVCCMCGDIGFPEKLFRCNNCRNRFQHSYCSNYYTESAEPIDVCDWCHSEGRTSS 60
           MVD ++VCCMCGDIGFP+KLF CN CRNRFQHSYCSNYY+ESAEPI+VCDWC  EGR++S
Sbjct: 1   MVDLQIVCCMCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSTS 60

Query: 61  GR------LPPPPPPPTAA----ARSEYSGDRTIKNHHHADKP----KHAS-----SPRP 115
            R         PP   T A    +RSEYS D+ IK HHH D P    KH       SPRP
Sbjct: 61  SRSHGSSSSRRPPSTGTNATGIMSRSEYSSDKLIK-HHHDDSPTEKGKHGGAGSTPSPRP 120

[Close]

BLAST of Sed0026157 vs. ExPASy TrEMBL
Match: A0A6J1E160 (uncharacterized protein LOC111024997 OS=Momordica charantia OX=3673 GN=LOC111024997 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.9e-36
Identity = 82/133 (61.65%), Postives = 92/133 (69.17%), Query Frame = 0


Query: 1   MVDREMVCCMCGDIGFPEKLFRCNNCRNRFQHSYCSNYYTESAEPIDVCDWCHSEGRT-- 60
           MVD ++VCCMCGDIGFP+KLFRCN CRNRFQHSYCSNYY+ESAEPI+VCDWC  EGR+  
Sbjct: 1   MVDLQIVCCMCGDIGFPDKLFRCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSSS 60

Query: 61  ----SSGRLPPPPPPPTAA-----ARSEYSGDRTIKNHHH---ADKPKHAS-----SPRP 115
               SS +  PPPPP          RS+Y+  +      H   ADK KHA      SPRP
Sbjct: 61  RSHGSSSKKSPPPPPQAGGGAGIMTRSDYTTVKIKHGEDHTAAADKGKHAGVGGVPSPRP 120

[Close]

BLAST of Sed0026157 vs. ExPASy TrEMBL
Match: A0A6J1L0S8 (uncharacterized protein LOC111499326 OS=Cucurbita maxima OX=3661 GN=LOC111499326 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 5.5e-35
Identity = 82/132 (62.12%), Postives = 93/132 (70.45%), Query Frame = 0


Query: 1   MVDREMVCCMCGDIGFPEKLFRCNNCRNRFQHSYCSNYYTESAEPIDVCDWCHSEGRTS- 60
           MVD ++VCC+CGD+GFP+KLFRC  C NRFQHSYCSNYY+ESAEPI+VCDWC  EGR+S 
Sbjct: 1   MVDLQIVCCLCGDVGFPDKLFRCVKCSNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSSS 60

Query: 61  -----SGRLPPPPPPPTAA--ARSEYSGDRTIKNHHH-----ADKPKH-----ASSPRPT 115
                S R PPP     A   +RS YSGD+ IK+HH       DK K      A SPRPT
Sbjct: 61  RSHGTSSRRPPPTATEAAGIMSRSVYSGDK-IKHHHEDAAAAVDKGKQGGAGSAPSPRPT 120

[Close]

BLAST of Sed0026157 vs. ExPASy TrEMBL
Match: A0A6J1H4E1 (uncharacterized protein LOC111460301 OS=Cucurbita moschata OX=3662 GN=LOC111460301 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 9.4e-35
Identity = 81/132 (61.36%), Postives = 93/132 (70.45%), Query Frame = 0


Query: 1   MVDREMVCCMCGDIGFPEKLFRCNNCRNRFQHSYCSNYYTESAEPIDVCDWCHSEGRTS- 60
           MVD ++VCC+CGD+GFP+KLFRC  C NRFQHSYCSNYY+ESAEPI+VCDWC  EGR+S 
Sbjct: 1   MVDLQIVCCLCGDVGFPDKLFRCIKCSNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSSS 60

Query: 61  -----SGRLPPP--PPPPTAAARSEYSGDRTIKNHHH-----ADKPKH-----ASSPRPT 115
                S R PPP    P    +RS YSGD+ IK+HH       DK K       +SPRPT
Sbjct: 61  RSHGTSSRRPPPTATEPAGIMSRSVYSGDK-IKHHHEDSAATVDKGKQGGAGSVASPRPT 120

[Close]

BLAST of Sed0026157 vs. TAIR 10
Match: AT3G60520.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02070.1); Has 107 Blast hits to 107 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 114.4 bits (285), Expect = 6.1e-26
Identity = 66/129 (51.16%), Postives = 77/129 (59.69%), Query Frame = 0


Query: 1   MVDRE-MVCCMCGDIGFPEKLFRCNNCRNRFQHSYCSNYYTESAEPIDVCDWCHSEGRTS 60
           MVD E  VCCMCGD+GF +KLF C+ C NRFQHSYCS+YY E A+PI +CDWC  E ++ 
Sbjct: 1   MVDLERRVCCMCGDVGFFDKLFHCSKCLNRFQHSYCSSYYKEQADPIKICDWCQCEAKSR 60

Query: 61  SG-RLPPPPPPPTAAARSEYSG-DRTIKNHH-----------HADKPK-HASSPRPTTRR 115
           +G +          + RSEYS     IK               ADK K    SPRP TRR
Sbjct: 61  TGAKHGVNGGSSKRSYRSEYSSPHHQIKQQEINQTTSSSIPPAADKGKTGVPSPRPATRR 120

[Close]

BLAST of Sed0026157 vs. TAIR 10
Match: AT1G02070.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60520.1); Has 98 Blast hits to 98 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 113.2 bits (282), Expect = 1.4e-25
Identity = 63/130 (48.46%), Postives = 75/130 (57.69%), Query Frame = 0


Query: 5   EMVCCMCGDIGFPEKLFRCNNCRNRFQHSYCSNYYTESAEPIDVCDWCHSEGRTSS---- 64
           E VCCMCGD+GF +KLF C +CR RFQHSYCSNYY + AEP ++CDWC S+ R  S    
Sbjct: 2   ERVCCMCGDVGFSDKLFSCGHCRCRFQHSYCSNYYGQFAEPTEICDWCRSDDRKLSNVAR 61

Query: 65  -GRLPPPPPPPTA------AARSEYSGDRTIK--NHHHADKPK-------HASSPRPTTR 115
            G      P  +       + RSEYS    IK  N+ H    K         +SP+  TR
Sbjct: 62  HGGSSSKKPSSSVKYENDFSNRSEYSPGHRIKHNNNRHDQVAKGVAGDGGGVTSPKTATR 121

The following BLAST results are available for this feature:

BLAST of Sed0026157 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140491.1	2.2e-38	65.38	uncharacterized protein LOC101205257 [Cucumis sativus] >KGN46561.1 hypothetical ...	[more]
XP_008467003.1	1.6e-36	63.91	PREDICTED: uncharacterized protein LOC103504413 [Cucumis melo]	[more]
XP_022158531.1	6.1e-36	61.65	uncharacterized protein LOC111024997 [Momordica charantia]	[more]
XP_038875571.1	7.9e-36	63.64	uncharacterized protein LOC120067983 [Benincasa hispida]	[more]
KAF3440050.1	8.8e-35	61.60	hypothetical protein FNV43_RR18328 [Rhamnella rubrinervis]	[more]

BLAST of Sed0026157 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0026157 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFQ0	1.1e-38	65.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G108590 PE=4 SV=1	[more]
A0A1S3CSH8	7.7e-37	63.91	uncharacterized protein LOC103504413 OS=Cucumis melo OX=3656 GN=LOC103504413 PE=...	[more]
A0A6J1E160	2.9e-36	61.65	uncharacterized protein LOC111024997 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1L0S8	5.5e-35	62.12	uncharacterized protein LOC111499326 OS=Cucurbita maxima OX=3661 GN=LOC111499326...	[more]
A0A6J1H4E1	9.4e-35	61.36	uncharacterized protein LOC111460301 OS=Cucurbita moschata OX=3662 GN=LOC1114603...	[more]

BLAST of Sed0026157 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G60520.1	6.1e-26	51.16	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G02070.1	1.4e-25	48.46	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..104
None	No IPR available	PANTHER	PTHR33779	EXPRESSED PROTEIN	coord: 1..114
None	No IPR available	PANTHER	PTHR33779:SF16	SUBFAMILY NOT NAMED	coord: 1..114
IPR011011	Zinc finger, FYVE/PHD-type	SUPERFAMILY	57903	FYVE/PHD zinc finger	coord: 3..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0026157.1	Sed0026157.1	mRNA